Glyma16g27890 - SoyBase

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Report for Sequence Feature Glyma16g27890

Feature Type:	gene_model
Chromosome:	Gm16
Start:	31835860
stop:	31839040
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g27890

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G71695	AT	Annotation by Michelle Graham. TAIR10: Peroxidase superfamily protein \| chr1:26964359-26966557 FORWARD LENGTH=358	SoyBase	E_val: 5.00E-112	ISS
GO:0006979	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to oxidative stress	SoyBase	N/A	ISS
GO:0010075	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth	SoyBase	N/A	ISS
GO:0048653	GO-bp	Annotation by Michelle Graham. GO Biological Process: anther development	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0009505	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0004601	GO-mf	Annotation by Michelle Graham. GO Molecular Function: peroxidase activity	SoyBase	N/A	ISS
GO:0020037	GO-mf	Annotation by Michelle Graham. GO Molecular Function: heme binding	SoyBase	N/A	ISS
PF00141	PFAM	Peroxidase	JGI		ISS
UniRef100_H2D7G8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glutathione peroxidase n=1 Tax=Copaifera officinalis RepID=H2D7G8_9FABA	SoyBase	E_val: 2.00E-132	ISS
UniRef100_I1MP39	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MP39_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma16g27890

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma16g27890 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g164300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g27890

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma16g27890

Limit To All Plant Sequences

>Glyma16g27890.1   sequence type=CDS   gene model=Glyma16g27890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTACGCCGCCTAATTCTTTTTGTTCTTTGTTCTTTATTTATTCCATTCTACTTTCTTCATTCTTCCTTGCCTATGAGGCACAAGCCTACCCCCCAGTAGTGAATGGACTATCATATTCTTTCTATTCCCAAACCTGTCCCAAGCTTGAATCCATTGTGAGAAACCATCTTGAGAAGGAGTTCACGCAAGCTAGTTGGCAAGCTGCAGCCTTACTCGTCGTTTTCTTCCATGATTGTTTTGTTCAGGGATGTGATGGATCGTTGCTGCTGGATGGGAATCCAGGTGAAAGGGATCATCCACTCAACCGAGGCATAAGCCTTAAGGTTCTGCGGACCATTGATGATCTAAGGAATGTTGTTCACAATGAATGCGGCAGGATCGTTTCTTGTGCAGATATCACTGTCTTGGCAGCTCGTGACGCTGTTTACCTTTCTGGAGGTCCCAATTTTGCTGTGCCACTTGGAAGACGAGATAGTCTAAACTTTAGCTTCGAAGAAGTAAATAATCTTCCATTACCCTACAACATCACTAGTGTGACACTCCAGACATTTGCATCCAAAAACTTAGATGTCACAAATGTGGTTGCTTTAGTAGGTGCCCACACTCTTGGTCGTGCCCATTGTCACACATTCTACAATAGGCTTTCTCCTCTAGACCCCAACATGGATAAAACCCTAGCCAAAATCCTCAACACAACTTGCCCAAGTACATACTCACGTAACACTGCCAACTTGGACATAAGAACCCCCAAAGTGTTTGATAACAAATACTACATTAACTTAATGAATCGCCAGGGTTTGTTCACCTCTGACCAAGACTTGTTCACTGATAAGAGGACAAAGGGGCTAGTAGAGGCCTTTGCACACGATCAGACCTTATTCTTTGAGAAATTCGTGGATGGATTTATAAGGATGAGCCAATTGGATGTCTTGACGGGGAATCAAGGTGAAATTCGTGCAAAATGCAATGTCATAAACAATAAGAGACCTATAGTGACGTCTATTAATGTAGATGAGATGGTACAACTAATCTATTAG

Predicted protein sequences of Glyma16g27890

Limit To All Plant Sequences

>Glyma16g27890.1   sequence type=predicted peptide   gene model=Glyma16g27890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATPPNSFCSLFFIYSILLSSFFLAYEAQAYPPVVNGLSYSFYSQTCPKLESIVRNHLEKEFTQASWQAAALLVVFFHDCFVQGCDGSLLLDGNPGERDHPLNRGISLKVLRTIDDLRNVVHNECGRIVSCADITVLAARDAVYLSGGPNFAVPLGRRDSLNFSFEEVNNLPLPYNITSVTLQTFASKNLDVTNVVALVGAHTLGRAHCHTFYNRLSPLDPNMDKTLAKILNTTCPSTYSRNTANLDIRTPKVFDNKYYINLMNRQGLFTSDQDLFTDKRTKGLVEAFAHDQTLFFEKFVDGFIRMSQLDVLTGNQGEIRAKCNVINNKRPIVTSINVDEMVQLIY*

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