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Report for Sequence Feature Glyma16g27794

Feature Type:gene_model
Chromosome:Gm16
Start:31745785
stop:31746215
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma16g27794
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G12700AT Annotation by Michelle Graham. TAIR10: ATP binding;nucleic acid binding;helicases | chr1:4323722-4326227 REVERSE LENGTH=735 SoyBaseE_val: 4.00E-17ISS
GO:0080156GO-bp Annotation by Michelle Graham. GO Biological Process: mitochondrial mRNA modification SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0003676GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding SoyBaseN/AISS
GO:0004386GO-mf Annotation by Michelle Graham. GO Molecular Function: helicase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
PTHR24015Panther FAMILY NOT NAMED JGI ISS
PF01535PFAM PPR repeat JGI ISS
UniRef100_G8A0H7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=G8A0H7_MEDTR SoyBaseE_val: 1.00E-32ISS
UniRef100_UPI000233E1DFUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233E1DF related cluster n=1 Tax=unknown RepID=UPI000233E1DF SoyBaseE_val: 1.00E-51ISS

Expression Patterns of Glyma16g27794
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma16g27794 not represented in the dataset
Glyma16g27794 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma16g27794 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma16g27794
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma16g27794
>Glyma16g27794.1   sequence type=CDS   gene model=Glyma16g27794   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATCTCCTAAAAGAAAGGCTGAAAACAAATATGGTTCCTAATACAATGACATACAGTTCTCTTGTTGATGGATTGTGCAAATCAGGGAGAAAGTCTTATGCTTTGGATCTTATTGATGAGATACACCGCAGACGTCAACCAGCTGATGTAGTCACCTACACTTCCTTATTAGACGAAAATGAAGGAACGGAGAATTCAGCCAAATGTGTACACACACAGTACTTGACGGGCTGTGTAAAGGGTGGAAGACTTAAGAATGCACAGGAGTTTTTCCAACATCTTTTGGTTAAAGGCTATTGTATAGATGTCTGGACATATACTGTCATGATCAGTGGGCTTTGTAAAGAGGGCATGCTTGATGAAGCTTTGGCCATGAAGTAA
Predicted protein sequences of Glyma16g27794
>Glyma16g27794.1   sequence type=predicted peptide   gene model=Glyma16g27794   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNLLKERLKTNMVPNTMTYSSLVDGLCKSGRKSYALDLIDEIHRRRQPADVVTYTSLLDENEGTENSAKCVHTQYLTGCVKGGRLKNAQEFFQHLLVKGYCIDVWTYTVMISGLCKEGMLDEALAMK*






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