Glyma16g27780 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma16g27780

Feature Type:	gene_model
Chromosome:	Gm16
Start:	31737339
stop:	31739210
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g27780

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G59200	AT	Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein \| chr5:23888793-23890427 REVERSE LENGTH=544	SoyBase	E_val: 4.00E-169	ISS
GO:0031425	GO-bp	Annotation by Michelle Graham. GO Biological Process: chloroplast RNA processing	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_B6SSC4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat protein PPR868-14 n=1 Tax=Zea mays RepID=B6SSC4_MAIZE	SoyBase	E_val: 2.00E-150	ISS
UniRef100_I1LS78	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1LS78_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma16g27780

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma16g27780 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g161800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g27780

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma16g27780

Limit To All Plant Sequences

>Glyma16g27780.1   sequence type=CDS   gene model=Glyma16g27780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTATTTCCACAGTGCCTATAACAACCGCAAATTTACCAAATCCACGTTCTAACTCCCATGATTCTAACCTTCGTAAAGCCATAATCTCACTCCTTCACAAGAACCGCAAGAACCCAAAACACGTTCAATCAATACACGGCCACGCCATAAAAACTAGAACTTCACAAGACCCTTTTGTAGCCTTCGAGCTTCTTCGCGTATATTGCAAGGTGAACTACATTGATCATGCCATCAAGCTCTTCCGCTGCACCCAGAACCCAAATGTGTACCTTTACACTTCCCTCATTGATGGGTTTGTGTCATTTGGCTCTTACACTGATGCCAAATGTGGAAAAGAGGTTAATGGGCTTGTTTTGAAATCTGGGTTGGGCTTGGATAGGTCCATTGGGTTGAAGTTGGTTGAGTTGTATGGGAAGTGTGGTGTATTGGAGGATGCGAGGAAGATGTTTGATGGAATGCCTGAACGAAATGTGGTGGCATGTACCGTTATGATTGGTTCGTGTTTTGATTGTGGGATGGTTGAGGAGGCGATTGAAGTGTTCAATGAGATGGGAACTCGGAATACAGTGTGTTGGACAATGGTGATTGATGGGTTGGTGTTCAGGCAGATGCAAGTGAAGGGTGTGGAGCCTAATGAGGTTACGTTTGTTTGTGTCTTGTCCGCTTGGGAGCTTTGGCTCGGTCGATGGATTCATGCATACATGCGCAAGTGTGGTGTTGAGGTTAACCGGTTTGTTGCCGGTGCGTTGATCAATATGTATTCAAGGTGTGGTGACATTGATGAGGCACAATCATTGTTTGATGGGGTGAGAGTGAAAGATGTGTCTACTTATAATTCCATGATTGGGGGATTGGCTTTGCATGGGAAGAGCATTGAAGCAGTTGAGTTGTTTAGTGAAATGCTTAAGGAGAGGGTTAGGCCAAATGGTATAACATTTGTTGGGGTTTTGAATGCTTGCAGCCATGGAGGGTTGGTGGATCTGGGTGGTGAAATATTTGAATCAATGGAAATGATTCATGGGATTGAACCAGAGGTAGAACACTATGGCTGCATGGTTGACATTCTTGGTAGGGTAGGTAGGCTTGAAGAGGCCTTTGACTTCATTGGGAGGATGGGAGTGGAAGCTGATGATAAAATGCTTTGCCCATTATTAAGTGCTTGTAAAATCCATAAGAACATAGGGATAGGAGAAAAGGTTGCAAAACTTTTGAGTGAACATTATAGGATAGATTCTGGTTCCTTCATCATGCTGTCAAATTTCTATGCTTCTTTGGAAAGATGGAGCTATGCTGCAGAAGTTAGAGAAAAGATGGAGAAGGGAGGAATCATAAAGGAACCAGGTTGTAGTTCTATTGAAGTCAACAATGCAATTCATGAGTTTCTTTCAGGAGACCTCAGATACCCTGAGAGGAAAAGAACCTACAAAAGGTTAGAGGAGTTAAACTATTTGACAAAGTTCGAAGGTTATTTACCAGCAACTAAGGTGGCTTTACATGATATTGATGATGAACAAAAGGAATTGGCTTTGGCTGTGCATAGTGAGAGGCTTGCAATATGCTACGGACTAGTCTCAACTGAAGCTTACACAACACTTAGAGTTGGGAAAAATGTAAGGATATGCGATGATTGCCACGCAATGAACAAGCTCATAGCAAAGATTACTAGGCGAAAAGTTGTGGTTAGAGATCGCAATAGATTCCACCATTTTAAAAATGGAGAATGTTCTTGTAAGGATTACTGGTGA

Predicted protein sequences of Glyma16g27780

Limit To All Plant Sequences

>Glyma16g27780.1   sequence type=predicted peptide   gene model=Glyma16g27780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIISTVPITTANLPNPRSNSHDSNLRKAIISLLHKNRKNPKHVQSIHGHAIKTRTSQDPFVAFELLRVYCKVNYIDHAIKLFRCTQNPNVYLYTSLIDGFVSFGSYTDAKCGKEVNGLVLKSGLGLDRSIGLKLVELYGKCGVLEDARKMFDGMPERNVVACTVMIGSCFDCGMVEEAIEVFNEMGTRNTVCWTMVIDGLVFRQMQVKGVEPNEVTFVCVLSAWELWLGRWIHAYMRKCGVEVNRFVAGALINMYSRCGDIDEAQSLFDGVRVKDVSTYNSMIGGLALHGKSIEAVELFSEMLKERVRPNGITFVGVLNACSHGGLVDLGGEIFESMEMIHGIEPEVEHYGCMVDILGRVGRLEEAFDFIGRMGVEADDKMLCPLLSACKIHKNIGIGEKVAKLLSEHYRIDSGSFIMLSNFYASLERWSYAAEVREKMEKGGIIKEPGCSSIEVNNAIHEFLSGDLRYPERKRTYKRLEELNYLTKFEGYLPATKVALHDIDDEQKELALAVHSERLAICYGLVSTEAYTTLRVGKNVRICDDCHAMNKLIAKITRRKVVVRDRNRFHHFKNGECSCKDYW*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain