SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G71720 | AT | Annotation by Michelle Graham. TAIR10: Nucleic acid-binding proteins superfamily | chr1:26983744-26985893 FORWARD LENGTH=500 | SoyBase | E_val: 4.00E-169 | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| PTHR10287 | Panther | RIBOSOMAL PROTEIN S1/PRE-RRNA PROCESSING PROTEIN RRP5 | JGI | ISS | |
| PF00575 | PFAM | S1 RNA binding domain | JGI | ISS | |
| UniRef100_I1MP28 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1MP28_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q9M9H4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: F14O23.10 protein n=1 Tax=Arabidopsis thaliana RepID=Q9M9H4_ARATH | SoyBase | E_val: 2.00E-166 | ISS |
|
Glyma16g27770 not represented in the dataset |
Glyma16g27770 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g161600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g27770.3 sequence type=transcript gene model=Glyma16g27770 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTGGCATTGCCACTCAAAATGCAGCGAGGCTCAAATTACTTGTGAACTGAACTGAACTGGAGGAAGTGAGAGAAAGAAGCAAAAGGTGAAGATAAAAGAGGATAAACCAAAGTGGCACGAAACTGAGAACTGAACAAAACATCAAATTGTGTCTCAGCATTCGAAGATGTCATTGATTCTTTGTTCTTGTAAGTCCCTTTGTTTTCCCAAGTGTTCTTTACCTCTTAATCATATCAGCAACAATTTGAGGAACAAACCACATGCGAACCCCGTGAAACTCCCATCTCCAACACCCCAAAAATTTTGCCCCTTTACAAATAAATTTTCAATTTTGGGAGCCACCCATGTTCCATTTTGCTCCAGGAATGAGGAATTTGTGGTTGATGATAGGATCCAGGAGCTTGAAACGCTTGAGCTGCAGGACAAGCCTTCACTGGTTCCCATTAAAAACGAGTCCTTTTCTGAAATTGATGTACACTCAGAGAATGATTCTACCGAAGAGGATGTTTTGGCACCCTTTTTGAAGTTTTTCAAAGGGAGTAATGATTCTGTGGTGGAGGAGGAAGAAGCTGGTGGGGTGTTAGAAGGTTCCAAAGAAAGGGGTAATGAGAGTGAAAATGCTGAGAAGTTTTGTGCTGAGTACTATGAGCCCAAACCTGGGGATTTTGTGGTTGGTGTTGTTGTTTCAGGTAATGAGAACAAGCTCAATGTGAATGTGGGGTCAGAGTTACCAGGGACAATGTTGACAAAGGAGGTGCTTCCCTTGTATAGTAAAGAAATGGAGCACTTGTTGTGTGATGTGAACAATGCTGAAGAGAGTCCTACGGTTCAGGGGAAGATAGGGATTCTGAAGAATGATGATGCAATAAATGGGGTGCCAGTGCCTGGGGGAACTGTTGTAGAGATTGGAACCATTTTATTTGCTGAGGTTCTCGGTAGGACACTTGCTGGTAGGCCGTTGCTTTCTACAAGGAGGCTCTTTCGCCGGATTGCCTGGCATCGGCTGAGGCAGATAAAACAGCTTGGTGAACCTATAGAAGTTAGAATCACTGAGTGGAATACTAAGGGACTGCTGACAAGGATTGAGGGTTTGCGAGCTTTCCTACCCAAAGCCGAGCTTATGAAAAGAGCAAATAGCATTACTGAGTTGAAAGAAAATATTGGACGCCATATGCATGTACAAGTTATTCTAGTAGATGAAGCTGAAAACAATTTGATACTTAGTGAGAGGGAAGCTTGGGAAAAGCTAAATCTTCGAGAAGGAACACTTCTTGAAGGGACCGTAAGAAAGATCCTTCCTTATGGAGCCCAAATAAGGATAGGAGAAACAAATAGAAGCATTGCAGACCTTGAGAGTGAACCTGGACTATTTCTATCTAATAAAGAGAGAGTATTTCTGGAGGCTGATATGATGGCAAAGAAATACAGGGAAAAGCTACCTCCTGCTTTTATCTCTCAACGACCAGATGGCCTCCATAACAATGTCCTCCCTTTTGAAAATGAAGCACTTTATGCTAACTGGAAATGGTTCAAGTTTGAGAGATAATGATGAAACAATTACCCTTGAAAGCATAATAACATTATTCATAGGAAAGCTTGATTGATAGAACCTGACATTGCATAGCACAAAAAGTTCCAAAACGGGGGATTTCATTCTTGGAAGAAAACATTGAGTCTATAACATCCAAGCTTTTGATTCAGTCTTTATTCATTCATAAGTTGATTGCATGCATTGCAGAGCACACAAGGTATGTGGTTTCAATAGTGTGATATGCTTTCAGATTATTTTTTTTCCTTTCATTTTTTGCCTTAATATTTATTCAAAATGATTTTTTTCCATGCCTTTTTAGCTTGTTGATTAATAGGTAGATTCATGTAGCTTGTAAATTTTTATGTAAGTTATATTTACATTTTTTTCACTTCAATTTTAATGCTTTCCTTTTCGTCTTGTCTCTATCTTTAACTTTTCATCTATTTTTGCGTTTTCTTTTAAAGGGTTTTATGTCGCATGTATTGCTAGTTTGGAGATAACAATTGATGTTCCAAGATATTAAATCATTTGATGTTTCTCAACAAAATTCAGCTATTTATCACAATAATACAGGGGGAAAAACAATTTACTTTTTCCGCTTGTTTTAGCAAGGAACTTATACGTTTAATTGGAAAATGTCTTCTCATTTAGCGTCATTATATTATATTTTATTTTTTAAATCAAATTTACTAAGTCTTCAATTTCTTCTGTGGATAAAAAAAATTCAAAACAGTCGAAGACACCTAATACTTAGGTGGCATTAAAGTGTTGTTAAAGAACACTACTATCAAACCCAATACTTTTAAAGTTAACAAATATAATAATTAGTTACATTGGAAAAATATAATAATCAGAAAGGTGAAATAAATCATATCATTTTGGGTGAGATAAATTAGTTTATAATATTTG
>Glyma16g27770.2 sequence type=CDS gene model=Glyma16g27770 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCATTGATTCTTTGTTCTTGTAAGTCCCTTTGTTTTCCCAAGTGTTCTTTACCTCTTAATCATATCAGCAACAATTTGAGGAACAAACCACATGCGAACCCCGTGAAACTCCCATCTCCAACACCCCAAAAATTTTGCCCCTTTACAAATAAATTTTCAATTTTGGGAGCCACCCATGTTCCATTTTGCTCCAGGAATGAGGAATTTGTGGTTGATGATAGGATCCAGGAGCTTGAAACGCTTGAGCTGCAGGACAAGCCTTCACTGGTTCCCATTAAAAACGAGTCCTTTTCTGAAATTGATGTACACTCAGAGAATGATTCTACCGAAGAGGATGTTTTGGCACCCTTTTTGAAGTTTTTCAAAGGGAGTAATGATTCTGTGGTGGAGGAGGAAGAAGCTGGTGGGGTGTTAGAAGGTTCCAAAGAAAGGGGTAATGAGAGTGAAAATGCTGAGAAGTTTTGTGCTGAGTACTATGAGCCCAAACCTGGGGATTTTGTGGTTGGTGTTGTTGTTTCAGGTAATGAGAACAAGCTCAATGTGAATGTGGGGTCAGAGTTACCAGGGACAATGTTGACAAAGGAGGTGCTTCCCTTGTATAGTAAAGAAATGGAGCACTTGTTGTGTGATGTGAACAATGCTGAAGAGAGTCCTACGGTTCAGGGGAAGATAGGGATTCTGAAGAATGATGATGCAATAAATGGGGTGCCAGTGCCTGGGGGAACTGTTGTAGAGATTGGAACCATTTTATTTGCTGAGGTTCTCGGTAGGACACTTGCTGGTAGGCCGTTGCTTTCTACAAGGAGGCTCTTTCGCCGGATTGCCTGGCATCGGCTGAGGCAGATAAAACAGCTTGGTGAACCTATAGAAGTTAGAATCACTGAGTGGAATACTAAGGGACTGCTGACAAGGATTGAGGGTTTGCGAGCTTTCCTACCCAAAGCCGAGCTTATGAAAAGAGCAAATAGCATTACTGAGTTGAAAGAAAATATTGGACGCCATATGCATGTACAAGTTATTCTAGTAGATGAAGCTGAAAACAATTTGATACTTAGTGAGAGGGAAGCTTGGGAAAAGCTAAATCTTCGAGAAGGAACACTTCTTGAAGGGACCGTAAGAAAGATCCTTCCTTATGGAGCCCAAATAAGGATAGGAGAAACAAATAGAAGTGGATTGCTACATGTTTCAAATATCACTCGAGCCCAAATTACTTCCATCAGTGACATACTTTCTGTTGATGAGAAGGTTAAAGTTCTGGTCGTGAAGTCAGTCTCTCATGATAAAATTTCTTTAAGCATTGCAGACCTTGAGAGTGAACCTGGACTATTTCTATCTAATAAAGAGAGAGTATTTCTGGAGGCTGATATGATGGCAAAGAAATACAGGGAAAAGCTACCTCCTGCTTTTATCTCTCAACGACCAGATGGCCTCCATAACAATGTCCTCCCTTTTGAAAATGAAGCACTTTATGCTAACTGGAAATGGTTCAAGTTTGAGAGATAA >Glyma16g27770.3 sequence type=CDS gene model=Glyma16g27770 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCATTGATTCTTTGTTCTTGTAAGTCCCTTTGTTTTCCCAAGTGTTCTTTACCTCTTAATCATATCAGCAACAATTTGAGGAACAAACCACATGCGAACCCCGTGAAACTCCCATCTCCAACACCCCAAAAATTTTGCCCCTTTACAAATAAATTTTCAATTTTGGGAGCCACCCATGTTCCATTTTGCTCCAGGAATGAGGAATTTGTGGTTGATGATAGGATCCAGGAGCTTGAAACGCTTGAGCTGCAGGACAAGCCTTCACTGGTTCCCATTAAAAACGAGTCCTTTTCTGAAATTGATGTACACTCAGAGAATGATTCTACCGAAGAGGATGTTTTGGCACCCTTTTTGAAGTTTTTCAAAGGGAGTAATGATTCTGTGGTGGAGGAGGAAGAAGCTGGTGGGGTGTTAGAAGGTTCCAAAGAAAGGGGTAATGAGAGTGAAAATGCTGAGAAGTTTTGTGCTGAGTACTATGAGCCCAAACCTGGGGATTTTGTGGTTGGTGTTGTTGTTTCAGGTAATGAGAACAAGCTCAATGTGAATGTGGGGTCAGAGTTACCAGGGACAATGTTGACAAAGGAGGTGCTTCCCTTGTATAGTAAAGAAATGGAGCACTTGTTGTGTGATGTGAACAATGCTGAAGAGAGTCCTACGGTTCAGGGGAAGATAGGGATTCTGAAGAATGATGATGCAATAAATGGGGTGCCAGTGCCTGGGGGAACTGTTGTAGAGATTGGAACCATTTTATTTGCTGAGGTTCTCGGTAGGACACTTGCTGGTAGGCCGTTGCTTTCTACAAGGAGGCTCTTTCGCCGGATTGCCTGGCATCGGCTGAGGCAGATAAAACAGCTTGGTGAACCTATAGAAGTTAGAATCACTGAGTGGAATACTAAGGGACTGCTGACAAGGATTGAGGGTTTGCGAGCTTTCCTACCCAAAGCCGAGCTTATGAAAAGAGCAAATAGCATTACTGAGTTGAAAGAAAATATTGGACGCCATATGCATGTACAAGTTATTCTAGTAGATGAAGCTGAAAACAATTTGATACTTAGTGAGAGGGAAGCTTGGGAAAAGCTAAATCTTCGAGAAGGAACACTTCTTGAAGGGACCGTAAGAAAGATCCTTCCTTATGGAGCCCAAATAAGGATAGGAGAAACAAATAGAAGCATTGCAGACCTTGAGAGTGAACCTGGACTATTTCTATCTAATAAAGAGAGAGTATTTCTGGAGGCTGATATGATGGCAAAGAAATACAGGGAAAAGCTACCTCCTGCTTTTATCTCTCAACGACCAGATGGCCTCCATAACAATGTCCTCCCTTTTGAAAATGAAGCACTTTATGCTAACTGGAAATGGTTCAAGTTTGAGAGATAA
>Glyma16g27770.2 sequence type=predicted peptide gene model=Glyma16g27770 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSLILCSCKSLCFPKCSLPLNHISNNLRNKPHANPVKLPSPTPQKFCPFTNKFSILGATHVPFCSRNEEFVVDDRIQELETLELQDKPSLVPIKNESFSEIDVHSENDSTEEDVLAPFLKFFKGSNDSVVEEEEAGGVLEGSKERGNESENAEKFCAEYYEPKPGDFVVGVVVSGNENKLNVNVGSELPGTMLTKEVLPLYSKEMEHLLCDVNNAEESPTVQGKIGILKNDDAINGVPVPGGTVVEIGTILFAEVLGRTLAGRPLLSTRRLFRRIAWHRLRQIKQLGEPIEVRITEWNTKGLLTRIEGLRAFLPKAELMKRANSITELKENIGRHMHVQVILVDEAENNLILSEREAWEKLNLREGTLLEGTVRKILPYGAQIRIGETNRSGLLHVSNITRAQITSISDILSVDEKVKVLVVKSVSHDKISLSIADLESEPGLFLSNKERVFLEADMMAKKYREKLPPAFISQRPDGLHNNVLPFENEALYANWKWFKFER* >Glyma16g27770.3 sequence type=predicted peptide gene model=Glyma16g27770 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSLILCSCKSLCFPKCSLPLNHISNNLRNKPHANPVKLPSPTPQKFCPFTNKFSILGATHVPFCSRNEEFVVDDRIQELETLELQDKPSLVPIKNESFSEIDVHSENDSTEEDVLAPFLKFFKGSNDSVVEEEEAGGVLEGSKERGNESENAEKFCAEYYEPKPGDFVVGVVVSGNENKLNVNVGSELPGTMLTKEVLPLYSKEMEHLLCDVNNAEESPTVQGKIGILKNDDAINGVPVPGGTVVEIGTILFAEVLGRTLAGRPLLSTRRLFRRIAWHRLRQIKQLGEPIEVRITEWNTKGLLTRIEGLRAFLPKAELMKRANSITELKENIGRHMHVQVILVDEAENNLILSEREAWEKLNLREGTLLEGTVRKILPYGAQIRIGETNRSIADLESEPGLFLSNKERVFLEADMMAKKYREKLPPAFISQRPDGLHNNVLPFENEALYANWKWFKFER*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
