SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G60340 | AT | Annotation by Michelle Graham. TAIR10: P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:24275098-24275891 REVERSE LENGTH=178 | SoyBase | E_val: 1.00E-80 | ISS |
| GO:0000394 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation | SoyBase | N/A | ISS |
| GO:0006366 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transcription from RNA polymerase II promoter | SoyBase | N/A | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0009826 | GO-bp | Annotation by Michelle Graham. GO Biological Process: unidimensional cell growth | SoyBase | N/A | ISS |
| GO:0046939 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleotide phosphorylation | SoyBase | N/A | ISS |
| GO:0080186 | GO-bp | Annotation by Michelle Graham. GO Biological Process: developmental vegetative growth | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0004017 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: adenylate kinase activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| KOG3347 | KOG | Predicted nucleotide kinase/nuclear protein involved oxidative stress response | JGI | ISS | |
| PTHR12595 | Panther | POS9-ACTIVATING FACTOR FAP7-RELATED | JGI | ISS | |
| PF00004 | PFAM | ATPase family associated with various cellular activities (AAA) | JGI | ISS | |
| UniRef100_C6SYJ0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SYJ0_SOYBN | SoyBase | E_val: 1.00E-128 | ISS |
| UniRef100_G7K2Z4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Adenylate kinase isoenzyme n=2 Tax=Medicago truncatula RepID=G7K2Z4_MEDTR | SoyBase | E_val: 9.00E-100 | ISS |
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Glyma16g27430 not represented in the dataset |
Glyma16g27430 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g08350 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g158000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g27430.4 sequence type=transcript gene model=Glyma16g27430 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTTAAAAGTTAAAGAGATTCAGTAGAATTTATCTAATATATAAGTGTTGTTTTCAAATATTAAGGAGTTGTGGGGTGCGAGCGTGATTTTCTCGTTATAAAAATAAGAAGGAAGAGTGATTCAAATCTGAAGCTGAACCCTAACTAGCTGAGCAGACGGAGGAGAACTCGACTGAAGCTGCCTCTGCGACGCCGTTTCGATTCAGCCTCAGACATTTCTGTTGCAGTCATGGTGCAAGAAAATGGCAAGAGGAAGAAACCAAACATTCTGGTGACTGGCACACCGGGGACAGGAAAGACAACTGTGTGCACTGCTCTAGCTGAAGCCACCCAGCTCTGTCACATCAATGTCGGAGAATTAGTCAAAGAAAAGAACTTGCATGATGGATGGGATGATGAGCTTGATTGTTACCTTCTTAATGAAGACTTGGTTTGTGATGAACTTGAGGATGTTATGGAAGAGGGGGGAAACATTGTGGACTACCATGGCTGTGATTTCTTTCCTGAGCGTTGGTTTGATTGCGTGGTTGTACTTCAAACTGATAACACCATTTTGTATGACCGTTTGAGTAGGAGGGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCCAAGTTCTGCTTGAGGAGGCTAAAGAAAGTTACTCGGAGGAGAAAGTGATTGCAATGAAGAGTGATAATATAGAAGACGTTAGTAGAAATGTGGCAACTCTGACAGATTGGGTCAGAAATTGGTCTTTACCCTCACATTCTTAACAAAAAAAAATGAGTACTTTGTATATACCTTTCTGCTTGAGTATGGTGAAAGTATCACGATGAACTGCTACCTGAAGCAGATCTGCAGTGTGGTTGAATTCTCTTGCAAATTTTGGTGTGGCATGTATTTGTGGCATTTTATGTGATGGGTTTTAAATTTGACAATTGAAAGGTAACTTTTACCAAGTTGTGATAATGAGTTTCAAATAGTTAAGGGAAAAATTACCTTGTTAGATCTTGTTTAATAAACCTCCCTTTATATAGAGCTACCAAACTGTAGAAACATTATCCACCCTCTCGTATTTCATCCCTCCATCATCCATCCATCACTTTCTTTCGTAAAGCATACTGCATTTGTTACCTCTTTTACTTTTATTTG
>Glyma16g27430.3 sequence type=CDS gene model=Glyma16g27430 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTGCAAGAAAATGGCAAGAGGAAGAAACCAAACATTCTGGTGACTGGCACACCGGGGACAGGAAAGACAACTGTGTGCACTGCTCTAGCTGAAGCCACCCAGCTCTGTCACATCAATGTCGGAGAATTAGTCAAAGAAAAGAACTTGCATGATGGATGGGATGATGAGCTTGATTGTTACCTTCTTAATGAAGACTTGGTTTGTGATGAACTTGAGGATGTTATGGAAGAGGGGGGAAACATTGTGGACTACCATGGCTGTGATTTCTTTCCTGAGCGTTGGTTTGATTGCGTGGTTGTACTTCAAACTGATAACACCATTTTGTATGACCGTTTGAGTAGGAGGGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCCAAGTTCTGCTTGAGGAGGCTAAAGAAAGTTACTCGGAGGAGAAAGTGATTGCAATGAAGAGTGATAATATAGAAGACGTTAGTAGAAATGTGGCAACTCTGACAGATTGGGTCAGAAATTGGTCTTTACCCTCACATTCTTAA >Glyma16g27430.4 sequence type=CDS gene model=Glyma16g27430 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTGCAAGAAAATGGCAAGAGGAAGAAACCAAACATTCTGGTGACTGGCACACCGGGGACAGGAAAGACAACTGTGTGCACTGCTCTAGCTGAAGCCACCCAGCTCTGTCACATCAATGTCGGAGAATTAGTCAAAGAAAAGAACTTGCATGATGGATGGGATGATGAGCTTGATTGTTACCTTCTTAATGAAGACTTGGTTTGTGATGAACTTGAGGATGTTATGGAAGAGGGGGGAAACATTGTGGACTACCATGGCTGTGATTTCTTTCCTGAGCGTTGGTTTGATTGCGTGGTTGTACTTCAAACTGATAACACCATTTTGTATGACCGTTTGAGTAGGAGGGGGTACAAAGATTCAAAGCTTTCGAACAATATTGAATGTGAAATCTTCCAAGTTCTGCTTGAGGAGGCTAAAGAAAGTTACTCGGAGGAGAAAGTGATTGCAATGAAGAGTGATAATATAGAAGACGTTAGTAGAAATGTGGCAACTCTGACAGATTGGGTCAGAAATTGGTCTTTACCCTCACATTCTTAA
>Glyma16g27430.3 sequence type=predicted peptide gene model=Glyma16g27430 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVQENGKRKKPNILVTGTPGTGKTTVCTALAEATQLCHINVGELVKEKNLHDGWDDELDCYLLNEDLVCDELEDVMEEGGNIVDYHGCDFFPERWFDCVVVLQTDNTILYDRLSRRGYKDSKLSNNIECEIFQVLLEEAKESYSEEKVIAMKSDNIEDVSRNVATLTDWVRNWSLPSHS* >Glyma16g27430.4 sequence type=predicted peptide gene model=Glyma16g27430 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVQENGKRKKPNILVTGTPGTGKTTVCTALAEATQLCHINVGELVKEKNLHDGWDDELDCYLLNEDLVCDELEDVMEEGGNIVDYHGCDFFPERWFDCVVVLQTDNTILYDRLSRRGYKDSKLSNNIECEIFQVLLEEAKESYSEEKVIAMKSDNIEDVSRNVATLTDWVRNWSLPSHS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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