Glyma16g27350 - SoyBase

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Report for Sequence Feature Glyma16g27350

Feature Type:	gene_model
Chromosome:	Gm16
Start:	31360378
stop:	31363953
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g27350

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G22710	AT	Annotation by Michelle Graham. TAIR10: sucrose-proton symporter 2 \| chr1:8030911-8032970 REVERSE LENGTH=512	SoyBase	E_val: 0	ISS
GO:0009915	GO-bp	Annotation by Michelle Graham. GO Biological Process: phloem sucrose loading	SoyBase	N/A	ISS
GO:0015770	GO-bp	Annotation by Michelle Graham. GO Biological Process: sucrose transport	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0005351	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sugar:hydrogen symporter activity	SoyBase	N/A	ISS
GO:0008506	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sucrose:hydrogen symporter activity	SoyBase	N/A	ISS
GO:0008515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sucrose transmembrane transporter activity	SoyBase	N/A	ISS
GO:0015144	GO-mf	Annotation by Michelle Graham. GO Molecular Function: carbohydrate transmembrane transporter activity	SoyBase	N/A	ISS
KOG0637	KOG	Sucrose transporter and related proteins	JGI		ISS
PTHR19432	Panther	SUCROSE TRANSPORT PROTEIN	JGI		ISS
PTHR19432:SF2	Panther	PROSTEIN PROTEIN	JGI		ISS
UniRef100_A3DSX4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Sucrose transport protein SUF1 n=1 Tax=Phaseolus vulgaris RepID=A3DSX4_PHAVU	SoyBase	E_val: 0	ISS
UniRef100_I1MNZ0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MNZ0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma16g27350

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma16g27350

Paralog	Evidence	Comments
Glyma02g08260	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma16g27350 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g157100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g27350

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma16g27350

Limit To All Plant Sequences

>Glyma16g27350.2   sequence type=transcript   gene model=Glyma16g27350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATCCATCATCATAAAATTATATATCCACACATCTTAAGTCATACTTCCATGTCCATGCCAAATTTAGTCCAACCCATTCTCCCCACGCTATAAAATCCCCCCACTCCTTCTTGCTTCACACAACATATCTTTCTCTTGTTCCTTCTCCTTGTGATCTTCTTCAACCTTCAGAGTGAGAAAACACATTCAGAAACCACGTTTCTCTCTTCTTCTTCTTCTTCTTCTTTTTCTTCTCTCGAGGTCATTATTAAGTATTCACCATGGAGGCACCATCTCCCACCAAACCCAACGACCCAACAAAACCTTCCAACACTTCCACCACCCTTAGTCTGGAGGCCGGCCCGGCCCAAGCGAGCCCACTCCGAAAAATGTTTGCCGTGGCGTCCATCGCCGCCGGCATACAGTTCGGGTGGGCTCTCCAGCTCTCTCTTCTAACCCCCTACGTTCAGCTTTTAGGAGTCCCCCACGCGGCGGCCTCCTTCATCTGGCTCTGCGGGCCCATTTCCGGGCTCGTGGTACAGCCCATTGTGGGCTACTACAGCGACCACTGTACCTCCCGCTTTGGTCGCAGGCGCCCCTTTATTCTCGGGGGCGCCTTAGCCGTCGCCGTCGCCGTGTTCCTCATTGGTTACGCAGCCGATATAGGATACGCGGCGGGCGACGACATATCGAAAACGACCCGACCCCGAGCGGTCGGGGTCTTCGTCATAGGATTTTGGATCCTAGACGTGGCCAACAACATGCTTCAAGGACCCTGTCGCGCCTTTCTAGCAGACCTAGCTGCCGGCGACCAACGAAAAACAAGAATTGCTAACGGTTTTTTCTCGTTTTTCATGGCCGTGGGCAACGTGCTAGGTTACGCAGCAGGGTCCTACAAAGGTCTCCACAAGATGTTTCCCTTCACGGAGACCAAGGCCTGCGACGTGTTCTGCGCAAATCTCAAGAGCTGCTTCTTTTTCTCAATCCTCTTGCTGCTGTTTTTAGCAACGGTTGCTCTGCTCTACGTAAAGGACAAGCAAGTGGAAGCACGGGCCTTGGATGACGCCACGCAACCCTCGTGCTTCTTTCAGCTTTTCGGTGCTCTGAAAGAGCTCAAGAGACCGATGTGGATGCTGATGCTGGTGACAGCTGTGAACTGGGTGGGGTGGTTCCCTTACTTTTTGTTCGACACCGATTGGATGGGGCGCGAGGTGTACGGTGGTCAAGTGGGGGAGGACGCGTACGCCAATGGAGTGCGCGTTGGGTCGCTAGGGCTGATGGTAAACGCCGTCGTTTTGGGCTTCATGTCGCTGGCGGTGGAGCCGTTGGGGAAGATGGTTGGGGGAGTGAAGAGGCTGTGGGCGATTGTGAACTTTATTCTGGCAATTGGGTTCGGAATGACGGTGGTGATCACCAAGGTGGCGGAGCACCAGCGCAAGATGAATCCCGCCGCCGTGGGTCACCCCTCCGAAGGGGTGGTGGTTGGGTCCATGGTTTTCTTTGGGGTTCTCGGAGTTCCTCTTGCGATTACTTTCAGTGTTCCATTTGCTCTAGCATCAATATACTGCAGCGCTTCAGGAGCAGGCCAAGGTAAACACACCAATTCACAACTTGTCAGAATTAGATTATTTTAATTACAATTTATTTATACTTAAATTCATAAAAGTAACTTTAAATATTTTACTTTTCGCAAATTGGGTTATACTAAACACACACTCAATTAAATAAATTCTTCTCAAACTTGGGCTAATTCATGTAGCCAATTGGGTTTTACACTTTCACTAACCTTTTTTTCTTTGCTTCAGGTTTATCTTTGGGAGTCCTCAATCTTGCAATTGTGGTGCCACAGGTTAGAATTCACTTCCTCGTATATTTAATTTGTCTGATTCATATCTCTGAGAGATTAATCTTTGATTCTGGATCAGATACTCTGAATAAAGAATAATAAAAATTATGCAATTATTTGATTATGTTGTATACACATGTGAATGTACAGATGGTGGTGTCTACATTAAGTGGTCCTTGGGATGCTTTGTTTGGTGGTGGCAACTTGCCGGCTTTCATGGTGGGTGCCGCGGCGGCCGCATTGAGCGCCATAATGGCGATTGTCTTGCTGCCAACTCCAAAGCCAGCTGATGAGGCCAAGGCTTCAAGCATGATGGCAGGGGGCTTTCACTAGTTAATCGAGTTTTGCATGTTTCAGTTTTGTCCCCTGCTTTAATAGGAAGAAACCAAAAAAAGAAAGTAATAAAAGAAGAAAATTTGGATAGTCTTTTAAGATTTGAATTGAAGCTGGTGTGTAATTAAGTAATAGACCCACCAAGTGCTACATTTATAACCTTTTGTAGCACCCACTGAACATAGTAATTGTAGAGTTTGGTGTGATTGTACATAATTGCAGTGGTTGGAACTTGGAAGACCCTTCCTCTTGTATAATTTTAGTCTGTTTCAGTGTTCAGAGGAATGTGGTGATTAAGGAGGAGTCTTAGTTTTAAGACTTTATATCAATTAATGATAATAAGGGAAATGCTACTTTTACAATGTTCTCTCAATTACTTATTTGATAG

Coding sequences of Glyma16g27350

Limit To All Plant Sequences

>Glyma16g27350.1   sequence type=CDS   gene model=Glyma16g27350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGCACCATCTCCCACCAAACCCAACGACCCAACAAAACCTTCCAACACTTCCACCACCCTTAGTCTGGAGGCCGGCCCGGCCCAAGCGAGCCCACTCCGAAAAATGTTTGCCGTGGCGTCCATCGCCGCCGGCATACAGTTCGGGTGGGCTCTCCAGCTCTCTCTTCTAACCCCCTACGTTCAGCTTTTAGGAGTCCCCCACGCGGCGGCCTCCTTCATCTGGCTCTGCGGGCCCATTTCCGGGCTCGTGGTACAGCCCATTGTGGGCTACTACAGCGACCACTGTACCTCCCGCTTTGGTCGCAGGCGCCCCTTTATTCTCGGGGGCGCCTTAGCCGTCGCCGTCGCCGTGTTCCTCATTGGTTACGCAGCCGATATAGGATACGCGGCGGGCGACGACATATCGAAAACGACCCGACCCCGAGCGGTCGGGGTCTTCGTCATAGGATTTTGGATCCTAGACGTGGCCAACAACATGCTTCAAGGACCCTGTCGCGCCTTTCTAGCAGACCTAGCTGCCGGCGACCAACGAAAAACAAGAATTGCTAACGGTTTTTTCTCGTTTTTCATGGCCGTGGGCAACGTGCTAGGTTACGCAGCAGGGTCCTACAAAGGTCTCCACAAGATGTTTCCCTTCACGGAGACCAAGGCCTGCGACGTGTTCTGCGCAAATCTCAAGAGCTGCTTCTTTTTCTCAATCCTCTTGCTGCTGTTTTTAGCAACGGTTGCTCTGCTCTACGTAAAGGACAAGCAAGTGGAAGCACGGGCCTTGGATGACGCCACGCAACCCTCGTGCTTCTTTCAGCTTTTCGGTGCTCTGAAAGAGCTCAAGAGACCGATGTGGATGCTGATGCTGGTGACAGCTGTGAACTGGGTGGGGTGGTTCCCTTACTTTTTGTTCGACACCGATTGGATGGGGCGCGAGGTGTACGGTGGTCAAGTGGGGGAGGACGCGTACGCCAATGGAGTGCGCGTTGGGTCGCTAGGGCTGATGGTAAACGCCGTCGTTTTGGGCTTCATGTCGCTGGCGGTGGAGCCGTTGGGGAAGATGGTTGGGGGAGTGAAGAGGCTGTGGGCGATTGTGAACTTTATTCTGGCAATTGGGTTCGGAATGACGGTGGTGATCACCAAGGTGGCGGAGCACCAGCGCAAGATGAATCCCGCCGCCGTGGGTCACCCCTCCGAAGGGGTGGTGGTTGGGTCCATGGTTTTCTTTGGGGTTCTCGGAGTTCCTCTTGCGATTACTTTCAGTGTTCCATTTGCTCTAGCATCAATATACTGCAGCGCTTCAGGAGCAGGCCAAGGTTTATCTTTGGGAGTCCTCAATCTTGCAATTGTGGTGCCACAGATGGTGGTGTCTACATTAAGTGGTCCTTGGGATGCTTTGTTTGGTGGTGGCAACTTGCCGGCTTTCATGGTGGGTGCCGCGGCGGCCGCATTGAGCGCCATAATGGCGATTGTCTTGCTGCCAACTCCAAAGCCAGCTGATGAGGCCAAGGCTTCAAGCATGATGGCAGGGGGCTTTCACTAG

>Glyma16g27350.2   sequence type=CDS   gene model=Glyma16g27350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGCACCATCTCCCACCAAACCCAACGACCCAACAAAACCTTCCAACACTTCCACCACCCTTAGTCTGGAGGCCGGCCCGGCCCAAGCGAGCCCACTCCGAAAAATGTTTGCCGTGGCGTCCATCGCCGCCGGCATACAGTTCGGGTGGGCTCTCCAGCTCTCTCTTCTAACCCCCTACGTTCAGCTTTTAGGAGTCCCCCACGCGGCGGCCTCCTTCATCTGGCTCTGCGGGCCCATTTCCGGGCTCGTGGTACAGCCCATTGTGGGCTACTACAGCGACCACTGTACCTCCCGCTTTGGTCGCAGGCGCCCCTTTATTCTCGGGGGCGCCTTAGCCGTCGCCGTCGCCGTGTTCCTCATTGGTTACGCAGCCGATATAGGATACGCGGCGGGCGACGACATATCGAAAACGACCCGACCCCGAGCGGTCGGGGTCTTCGTCATAGGATTTTGGATCCTAGACGTGGCCAACAACATGCTTCAAGGACCCTGTCGCGCCTTTCTAGCAGACCTAGCTGCCGGCGACCAACGAAAAACAAGAATTGCTAACGGTTTTTTCTCGTTTTTCATGGCCGTGGGCAACGTGCTAGGTTACGCAGCAGGGTCCTACAAAGGTCTCCACAAGATGTTTCCCTTCACGGAGACCAAGGCCTGCGACGTGTTCTGCGCAAATCTCAAGAGCTGCTTCTTTTTCTCAATCCTCTTGCTGCTGTTTTTAGCAACGGTTGCTCTGCTCTACGTAAAGGACAAGCAAGTGGAAGCACGGGCCTTGGATGACGCCACGCAACCCTCGTGCTTCTTTCAGCTTTTCGGTGCTCTGAAAGAGCTCAAGAGACCGATGTGGATGCTGATGCTGGTGACAGCTGTGAACTGGGTGGGGTGGTTCCCTTACTTTTTGTTCGACACCGATTGGATGGGGCGCGAGGTGTACGGTGGTCAAGTGGGGGAGGACGCGTACGCCAATGGAGTGCGCGTTGGGTCGCTAGGGCTGATGGTAAACGCCGTCGTTTTGGGCTTCATGTCGCTGGCGGTGGAGCCGTTGGGGAAGATGGTTGGGGGAGTGAAGAGGCTGTGGGCGATTGTGAACTTTATTCTGGCAATTGGGTTCGGAATGACGGTGGTGATCACCAAGGTGGCGGAGCACCAGCGCAAGATGAATCCCGCCGCCGTGGGTCACCCCTCCGAAGGGGTGGTGGTTGGGTCCATGGTTTTCTTTGGGGTTCTCGGAGTTCCTCTTGCGATTACTTTCAGTGTTCCATTTGCTCTAGCATCAATATACTGCAGCGCTTCAGGAGCAGGCCAAGGTAAACACACCAATTCACAACTTGTCAGAATTAGATTATTTTAA

Predicted protein sequences of Glyma16g27350

Limit To All Plant Sequences

>Glyma16g27350.1   sequence type=predicted peptide   gene model=Glyma16g27350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEAPSPTKPNDPTKPSNTSTTLSLEAGPAQASPLRKMFAVASIAAGIQFGWALQLSLLTPYVQLLGVPHAAASFIWLCGPISGLVVQPIVGYYSDHCTSRFGRRRPFILGGALAVAVAVFLIGYAADIGYAAGDDISKTTRPRAVGVFVIGFWILDVANNMLQGPCRAFLADLAAGDQRKTRIANGFFSFFMAVGNVLGYAAGSYKGLHKMFPFTETKACDVFCANLKSCFFFSILLLLFLATVALLYVKDKQVEARALDDATQPSCFFQLFGALKELKRPMWMLMLVTAVNWVGWFPYFLFDTDWMGREVYGGQVGEDAYANGVRVGSLGLMVNAVVLGFMSLAVEPLGKMVGGVKRLWAIVNFILAIGFGMTVVITKVAEHQRKMNPAAVGHPSEGVVVGSMVFFGVLGVPLAITFSVPFALASIYCSASGAGQGLSLGVLNLAIVVPQMVVSTLSGPWDALFGGGNLPAFMVGAAAAALSAIMAIVLLPTPKPADEAKASSMMAGGFH*

>Glyma16g27350.2   sequence type=predicted peptide   gene model=Glyma16g27350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEAPSPTKPNDPTKPSNTSTTLSLEAGPAQASPLRKMFAVASIAAGIQFGWALQLSLLTPYVQLLGVPHAAASFIWLCGPISGLVVQPIVGYYSDHCTSRFGRRRPFILGGALAVAVAVFLIGYAADIGYAAGDDISKTTRPRAVGVFVIGFWILDVANNMLQGPCRAFLADLAAGDQRKTRIANGFFSFFMAVGNVLGYAAGSYKGLHKMFPFTETKACDVFCANLKSCFFFSILLLLFLATVALLYVKDKQVEARALDDATQPSCFFQLFGALKELKRPMWMLMLVTAVNWVGWFPYFLFDTDWMGREVYGGQVGEDAYANGVRVGSLGLMVNAVVLGFMSLAVEPLGKMVGGVKRLWAIVNFILAIGFGMTVVITKVAEHQRKMNPAAVGHPSEGVVVGSMVFFGVLGVPLAITFSVPFALASIYCSASGAGQGKHTNSQLVRIRLF*

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