SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G34380 | AT | Annotation by Michelle Graham. TAIR10: 5'-3' exonuclease family protein | chr1:12552839-12554299 REVERSE LENGTH=347 | SoyBase | E_val: 2.00E-141 | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0008409 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 5'-3' exonuclease activity | SoyBase | N/A | ISS |
| PTHR10133 | Panther | DNA POLYMERASE I | JGI | ISS | |
| PF01367 | PFAM | 5'-3' exonuclease, C-terminal SAM fold | JGI | ISS | |
| PF02739 | PFAM | 5'-3' exonuclease, N-terminal resolvase-like domain | JGI | ISS | |
| UniRef100_B9SLH3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: DNA polymerase I, putative n=1 Tax=Ricinus communis RepID=B9SLH3_RICCO | SoyBase | E_val: 3.00E-139 | ISS |
| UniRef100_I1MNY1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1MNY1_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma16g27271 not represented in the dataset |
Glyma16g27271 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g08201 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g156300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g27271.2 sequence type=transcript gene model=Glyma16g27271 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATCTAATATCTCATAGTCGCTCGTAAAAGTGACAAGTGACAACAAAACCCCACTCTACCAGTCCCCCTATCTTAAGAAAACTAAGCATAATCCATTTTCCCAACATCGCATATTGCACGACACGAGCGTTGAGACAGTAACCACGATGTCCAAACTATAGACAAGATGAAAACGTTGGAAATGAGTCTATTAGCAGGTGCTTACGTTCAACCCCGCTTCCCTTGTAACTACAACCCAACGCTTTCCGCATCTTGCAGAACCCAAAAGACAGCAACTTCACTAACCGTAACAACTCCCAAGAAAACAGAAAAGGCGTTATTCACTGAGTCATTCGATCAAACACGTGACGCGCAACCTCTCCCCGAAAAGAAGAAGAGGGTGTTCTTCTTAGACGTTAACCCGCTCTGTTACGAAGGAAGCAAACCCAGCTTGCACTCTCTCGGGCGGTGGCTCTCTCTGTTTCTCGAGCAAGTCAGCCATACCGACCCTGTCATTGCTGTTATTGATGGAGAAAGGGGTAGTGAGCATCGCAGAAAGTTGCTACCTTCATATAAAGCACATAGGAGAAAATTCACGAGACACATATCATCTTTGCAAAGATTTTCAAGTGGCCATGTTGGGAGGTCCCTCCAAGTTATCAATGATGTTCTCGGAAAATGCAATGTGCCAGTTATAAAAGTTGATGGCCATGAAGCTGATGATGTTGTTGCTACTCTTGCTGGACAAGTTCTCAATAAAGGGTTTCGAGTGGTTATTGCCTCCCCTGATAAGGATTTTAAGCAACTAATATCTGATGATGTGCAAATAGTTATGCCTTTGCCAGAGTTACAAAGGTGGTCCTTCTACACCTTGAGACACTACAGGGATCAGTACAATTGTGACCCAGAATCTGATCTGAGCCTTAGATGTATTGTAGGTGATGAAGTTGACGGTGTTCCTGGTATCCAACATCTGGTCCCTAGTTTTGGTCGGAAGACTGCTCTAAAACTTATTAAAAAGCATGGTTCATTGGAAACTTTATTAAATGCAGCTGCAATAAGGACTGTAGGCAGACCATATGCGCAGGATGCCCTTAAAAACCATGCTGATTACCTACGGAGAAATTATGAAGTTCTTGCCTTGAAAAGGGATGTAAATGTCCAACTTATTGAGGAGTGGTTGATTAAGAGAGACAATCGCAATGATAAAATTGCACTATCTGCCTTCTTTAAATATTTAGAAGAAAGTAAGGAGCTCACTAACAGTGGCAGGCCTAGCTTTTATAATGGTTAAATCCATACAGGTAACTGCTAAAAAATATATTTTTATCAGATTCACTTGCTTCCTTTGGGCAGAGAAGTCTGCAAATCACCGGAAATATTAACCTATGATGTTGTCACTAATATAAAATCAGAGCTCCAGGAACTATGGTTGTCCCTATACTATTCATTATACAACAAGAAAGTTTTATCCCACTATTCATTATAAGCATAGATTATTCTGTTTACTTTTCTATTCATATATGAATGAATGATCACTATTCATATTAATCCCATTGTTAATAAAATGATACTAACTTTACGTTTTACCTTCTTTATGATGCTGAAACTTTTTAGATATACAGTTTTACATGTGAATTTGCATTCTAGGGATGCTGTTGGTATCATGTTTGGTCACTATGACATGGAAGCTTGCTCCAGCTGTGTCATCCGCATTCACACAGTGCAATTAGAATCTTTCCAACCACCACCTTCACACAATATCTAGGTGTTACTCTGAGGAACTAGCATGCCTAAAATTTGTAGTTCCTAGTTATGTGACTTTGATAACTTGGTACAATTTTGAAGATTTATGTGCGATAACCCTACACGTGATTAAAAAATTCATGGTCCAAACCTTTTCAGCAAACTTGATTGGGTCAACCAGTTGCTAACATTATTTCCAAGATAATTTTGAGGCAATGAATGAAACTTGCGAAGGGATATAATTGAGAGATTCAGTATAAAGCAAGCTCAAGGACCGTTAGATGAAGGAAGGCCTCCCATGTGGCCAATTGGATGATTGCTGAATACCAGATTCATGTGGTTGTGATTATTTTTGAAAAATAAAATAAAAAATTACTTTTATAGTTCTCTTGTGATGTTAAATATATACTTGTTTTTCAAAATAAGCTAATTTAAGCATGCTTTTATTTGAAAATAAGCTACTAAGACCGTGTC
>Glyma16g27271.1 sequence type=CDS gene model=Glyma16g27271 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAAACGTTGGAAATGAGTCTATTAGCAGGTGCTTACGTTCAACCCCGCTTCCCTTGTAACTACAACCCAACGCTTTCCGCATCTTGCAGAACCCAAAAGACAGCAACTTCACTAACCGTAACAACTCCCAAGAAAACAGAAAAGGCGTTATTCACTGAGTCATTCGATCAAACACGTGACGCGCAACCTCTCCCCGAAAAGAAGAAGAGGGTGTTCTTCTTAGACGTTAACCCGCTCTGTTACGAAGGAAGCAAACCCAGCTTGCACTCTCTCGGGCGGTGGCTCTCTCTGTTTCTCGAGCAAGTCAGCCATACCGACCCTGTCATTGCTGTTATTGATGGAGAAAGGGGTAGTGAGCATCGCAGAAAGTTGCTACCTTCATATAAAGCACATAGGAGAAAATTCACGAGACACATATCATCTTTGCAAAGATTTTCAAGTGGCCATGTTGGGAGGTCCCTCCAAGTTATCAATGATGTTCTCGGAAAATGCAATGTGCCAGTTATAAAAGTTGATGGCCATGAAGCTGATGATGTTGTTGCTACTCTTGCTGGACAAGTTCTCAATAAAGGGTTTCGAGTGGTTATTGCCTCCCCTGATAAGGATTTTAAGCAACTAATATCTGATGATGTGCAAATAGTTATGCCTTTGCCAGAGTTACAAAGGTGGTCCTTCTACACCTTGAGACACTACAGGGATCAGTACAATTGTGACCCAGAATCTGATCTGAGCCTTAGATGTATTGTAGGTGATGAAGTTGACGGTGTTCCTGGTATCCAACATCTGGTCCCTAGTTTTGGTCGGAAGACTGCTCTAAAACTTATTAAAAAGCATGGTTCATTGGAAACTTTATTAAATGCAGCTGCAATAAGGACTGTAGGCAGACCATATGCGCAGGATGCCCTTAAAAACCATGCTGATTACCTACGGAGAAATTATGAAGTTCTTGCCTTGAAAAGGGATGTAAATGTCCAACTTATTGAGGAGTGGTTGATTAAGAGAGACAATCGCAATGATAAAATTGCACTATCTGCCTTCTTTAAATATTTAGAAGAAAGTAAGGAGCTCACTAACAGTGGCAGGCCTAGCTTTTATAATGGTTAA >Glyma16g27271.2 sequence type=CDS gene model=Glyma16g27271 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAAACGTTGGAAATGAGTCTATTAGCAGGTGCTTACGTTCAACCCCGCTTCCCTTGTAACTACAACCCAACGCTTTCCGCATCTTGCAGAACCCAAAAGACAGCAACTTCACTAACCGTAACAACTCCCAAGAAAACAGAAAAGGCGTTATTCACTGAGTCATTCGATCAAACACGTGACGCGCAACCTCTCCCCGAAAAGAAGAAGAGGGTGTTCTTCTTAGACGTTAACCCGCTCTGTTACGAAGGAAGCAAACCCAGCTTGCACTCTCTCGGGCGGTGGCTCTCTCTGTTTCTCGAGCAAGTCAGCCATACCGACCCTGTCATTGCTGTTATTGATGGAGAAAGGGGTAGTGAGCATCGCAGAAAGTTGCTACCTTCATATAAAGCACATAGGAGAAAATTCACGAGACACATATCATCTTTGCAAAGATTTTCAAGTGGCCATGTTGGGAGGTCCCTCCAAGTTATCAATGATGTTCTCGGAAAATGCAATGTGCCAGTTATAAAAGTTGATGGCCATGAAGCTGATGATGTTGTTGCTACTCTTGCTGGACAAGTTCTCAATAAAGGGTTTCGAGTGGTTATTGCCTCCCCTGATAAGGATTTTAAGCAACTAATATCTGATGATGTGCAAATAGTTATGCCTTTGCCAGAGTTACAAAGGTGGTCCTTCTACACCTTGAGACACTACAGGGATCAGTACAATTGTGACCCAGAATCTGATCTGAGCCTTAGATGTATTGTAGGTGATGAAGTTGACGGTGTTCCTGGTATCCAACATCTGGTCCCTAGTTTTGGTCGGAAGACTGCTCTAAAACTTATTAAAAAGCATGGTTCATTGGAAACTTTATTAAATGCAGCTGCAATAAGGACTGTAGGCAGACCATATGCGCAGGATGCCCTTAAAAACCATGCTGATTACCTACGGAGAAATTATGAAGTTCTTGCCTTGAAAAGGGATGTAAATGTCCAACTTATTGAGGAGTGGTTGATTAAGAGAGACAATCGCAATGATAAAATTGCACTATCTGCCTTCTTTAAATATTTAGAAGAAAGTAAGGAGCTCACTAACAGTGGCAGGCCTAGCTTTTATAATGGTTAA
>Glyma16g27271.1 sequence type=predicted peptide gene model=Glyma16g27271 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKTLEMSLLAGAYVQPRFPCNYNPTLSASCRTQKTATSLTVTTPKKTEKALFTESFDQTRDAQPLPEKKKRVFFLDVNPLCYEGSKPSLHSLGRWLSLFLEQVSHTDPVIAVIDGERGSEHRRKLLPSYKAHRRKFTRHISSLQRFSSGHVGRSLQVINDVLGKCNVPVIKVDGHEADDVVATLAGQVLNKGFRVVIASPDKDFKQLISDDVQIVMPLPELQRWSFYTLRHYRDQYNCDPESDLSLRCIVGDEVDGVPGIQHLVPSFGRKTALKLIKKHGSLETLLNAAAIRTVGRPYAQDALKNHADYLRRNYEVLALKRDVNVQLIEEWLIKRDNRNDKIALSAFFKYLEESKELTNSGRPSFYNG* >Glyma16g27271.2 sequence type=predicted peptide gene model=Glyma16g27271 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKTLEMSLLAGAYVQPRFPCNYNPTLSASCRTQKTATSLTVTTPKKTEKALFTESFDQTRDAQPLPEKKKRVFFLDVNPLCYEGSKPSLHSLGRWLSLFLEQVSHTDPVIAVIDGERGSEHRRKLLPSYKAHRRKFTRHISSLQRFSSGHVGRSLQVINDVLGKCNVPVIKVDGHEADDVVATLAGQVLNKGFRVVIASPDKDFKQLISDDVQIVMPLPELQRWSFYTLRHYRDQYNCDPESDLSLRCIVGDEVDGVPGIQHLVPSFGRKTALKLIKKHGSLETLLNAAAIRTVGRPYAQDALKNHADYLRRNYEVLALKRDVNVQLIEEWLIKRDNRNDKIALSAFFKYLEESKELTNSGRPSFYNG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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