Glyma16g27200 - SoyBase

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Report for Sequence Feature Glyma16g27200

Feature Type:	gene_model
Chromosome:	Gm16
Start:	31210896
stop:	31222346
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g27200

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G13570	AT	Annotation by Michelle Graham. TAIR10: decapping 2 \| chr5:4367532-4369992 FORWARD LENGTH=373	SoyBase	E_val: 1.00E-159	ISS
GO:0000956	GO-bp	Annotation by Michelle Graham. GO Biological Process: nuclear-transcribed mRNA catabolic process	SoyBase	N/A	ISS
GO:0006402	GO-bp	Annotation by Michelle Graham. GO Biological Process: mRNA catabolic process	SoyBase	N/A	ISS
GO:0006635	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation	SoyBase	N/A	ISS
GO:0009791	GO-bp	Annotation by Michelle Graham. GO Biological Process: post-embryonic development	SoyBase	N/A	ISS
GO:0010072	GO-bp	Annotation by Michelle Graham. GO Biological Process: primary shoot apical meristem specification	SoyBase	N/A	ISS
GO:0016441	GO-bp	Annotation by Michelle Graham. GO Biological Process: posttranscriptional gene silencing	SoyBase	N/A	ISS
GO:0016558	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix	SoyBase	N/A	ISS
GO:0031087	GO-bp	Annotation by Michelle Graham. GO Biological Process: deadenylation-independent decapping of nuclear-transcribed mRNA	SoyBase	N/A	ISS
GO:0044265	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular macromolecule catabolic process	SoyBase	N/A	ISS
GO:0000932	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasmic mRNA processing body	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0000287	GO-mf	Annotation by Michelle Graham. GO Molecular Function: magnesium ion binding	SoyBase	N/A	ISS
GO:0003729	GO-mf	Annotation by Michelle Graham. GO Molecular Function: mRNA binding	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
GO:0030145	GO-mf	Annotation by Michelle Graham. GO Molecular Function: manganese ion binding	SoyBase	N/A	ISS
GO:0042803	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein homodimerization activity	SoyBase	N/A	ISS
GO:0050072	GO-mf	Annotation by Michelle Graham. GO Molecular Function: m7G(5')pppN diphosphatase activity	SoyBase	N/A	ISS
KOG2937	KOG	Decapping enzyme complex, predicted pyrophosphatase DCP2	JGI		ISS
PTHR23114	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR23114:SF3	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00293	PFAM	NUDIX domain	JGI		ISS
PF05026	PFAM	Dcp2, box A domain	JGI		ISS
UniRef100_C6TGP5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TGP5_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q8GW31	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: mRNA-decapping enzyme subunit 2 n=1 Tax=Arabidopsis thaliana RepID=DCP2_ARATH	SoyBase	E_val: 6.00E-157	ISS

Expression Patterns of Glyma16g27200

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma16g27200 not represented in the dataset	Glyma16g27200 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma16g27200

Paralog	Evidence	Comments
Glyma02g08170	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma16g27200 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g155600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g27200

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma16g27200

Limit To All Plant Sequences

>Glyma16g27200.2   sequence type=transcript   gene model=Glyma16g27200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTGTAACCTTTAAATAATAGATCCGATCCGGTTCGGAGAACAACCGAACGAGGTTTTCTTTCTTTCTGCCGCTCAAATACGGAGAGAGAGAAATTGTTGAAGAAGCTTTTCTACTTCGAGCATTTTTATTATTTAATTTTGTTTGGTTTTAGGGTTTGAGAATCAGCACTGTGTCACGATGTCCAATCATCACCGTTCTTCCTCTAAGAACGGCCTTCCACCTCAAGAACTCCTTGACGATCTCTGCAGCCGATTTGTGCTAAATGTGCCAAAGGAAGATCTTCAGTCATTTGAAAGGATCTTGTTTCTTGTGGAGAATGCACATTGGTTTTATGAAGATAATTCCGTAGAAAATAATCCATCTCTGAAGTCATTAAATCTGAAGGAGTTCACTTCTTTATTGTTCAATAGCTGTGATGTTTTTCAGCCTTATGTGGCCCATATAGATGATATTTTCAAGGACTTCACTTCCTATAAGGTTCGAGTTCCTGTAACTGGGGCAATAATTCTTGATGAAACATATGAAAGGTGCTTGCTAGTGAAGGGATGGAAAGGTACAAGTTGGAGTTTCCCTCGTGGAAAAAAGAGCAAAGACGAAGAAGATCATGCATGTTCCATTAGAGAAGTCATGGAAGAAACAGGTTTTGATGTTTCAAAACTTCTGAACAAGGATGAATACCTTGAAGTTATTTTTGGACAACAGAGAGTGAGGCTTTACATTATTGCTGGAGTGAAAGATGATACGGCATTTGCTCCTCTTACCAAAAAGGAAATCAGTGAAATTGCATGGCACCGGCTTGATGATCTTCAACCAGCAAGTGATGAAGTGATATCTCGTAGCATCACCGGCCTTAAGCTTTATATGGTGGCCCCATTTCTGGCATCATTGAAATCGTGGATTTCAATACACCACCCTGCAATGGCTCCAAGGCCCGATTTGCCTCTTAAAGGTAACTCCTATTTCCCCCCAAACACTGGTCGGTTTTAAATGCCTGAGGTCATAGGGTGTAGTTTAGTTACTCGATGCTTGGCTGTGTTGGGATGAGTTAATCTCCAGCAGCTAGTTCAATCTGTTGCACTACATTATGTGCATCGCAGCCTTGCAGGACCTAATCTCGACCACTGAGGTACCGTTGACTTGAGAGGCTGAGGCATTAGAATTGAGATGTGTTAGTATTGAATTGTAAGCTACGATATTGTGCAGATTTCTTTGCTTGGAAAGCTTTTCAGTGCACCATTTGTCAAGGGATTCAAAAGGAAAAATCAACTGTCAATGAACTTGCATAAGTGTTACTTGTTCCAAATTTAGTACTGCAACGCATTCCTAGTTTGATCCTTTGTACATTTTCCAAACTGTACATTCTTCTTACATTAGTTAGGAATGCTAACAATCCTTTACTTTTGTGAAGGAATTTGCGTCTGGAAAGCAAAACCCGGTTCTATTGGAAGTAGCTCCACAGTAATGGATATCCAGCCAACAAAACCTGAACCTGATTCTCACACCCTTGACATGGGGCCTGGCAAGAGCTTTCGGAATTTCAGATTTGATACTGCCTTGATTTTACAAGCAATGGAAGCTTCCTTTTCTTCTTGAAAGTCCAGCAACCTTTATGTAAAGTTTCACGTAACTGAATTGATTTCCCCTCTTTCATTGGTAGTATTCACTATCCATGCTAATTAGTTTGTTGCTGTACATCATGTTCCTCAAGTTGTCTGGTTGATTGAATAATATGTATATTGTGTACAGGAAGTATTTGTACCTAAATAGTTTTCTCAGTTAGTGTGGTATTATCTGTAAAACTAGAGTAAAGGTTCAATGTAAAAGTTAGACTACTCCCTACATTTGAACTCATTCAGACTCCGGGTCTCGGGCAGAATTAAACCGATTTATTTGGTAATGCCATTATAAATCTGTACAAAGTGGCTACTTTATGGTTACTGATTACTATGCAAGTGGTTGATAGATAGATA

>Glyma16g27200.3   sequence type=transcript   gene model=Glyma16g27200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTGTAACCTTTAAATAATAGATCCGATCCGGTTCGGAGAACAACCGAACGAGGTTTTCTTTCTTTCTGCCGCTCAAATACGGAGAGAGAGAAATTGTTGAAGAAGCTTTTCTACTTCGAGCATTTTTATTATTTAATTTTGTTTGGTTTTAGGGTTTGAGAATCAGCACTGTGTCACGATGTCCAATCATCACCGTTCTTCCTCTAAGAACGGCCTTCCACCTCAAGAACTCCTTGACGATCTCTGCAGCCGATTTGTGCTAAATGTGCCAAAGGAAGATCTTCAGTCATTTGAAAGGATCTTGTTTCTTGTGGAGAATGCACATTGGTTTTATGAAGATAATTCCGTAGAAAATAATCCATCTCTGAAGTCATTAAATCTGAAGGAGTTCACTTCTTTATTGTTCAATAGCTGTGATGTTTTTCAGCCTTATGTGGCCCATATAGATGATATTTTCAAGGACTTCACTTCCTATAAGGTTCGAGTTCCTGTAACTGGGGCAATAATTCTTGATGAAACATATGAAAGGTGCTTGCTAGTGAAGGGATGGAAAGGTACAAGTTGGAGTTTCCCTCGTGGAAAAAAGAGCAAAGACGAAGAAGATCATGCATGTTCCATTAGAGAAGTCATGGAAGAAACAGGTTTTGATGTTTCAAAACTTCTGAACAAGGATGAATACCTTGAAGTTATTTTTGGACAACAGAGAGTGAGGCTTTACATTATTGCTGGAGTGAAAGATGATACGGCATTTGCTCCTCTTACCAAAAAGGAAATCAGTGAAATTGCATGGCACCGGCTTGATGATCTTCAACCAGCAAGTGATGAAGTGATATCTCGTAGCATCACCGGCCTTAAGCTTTATATGGTGGCCCCATTTCTGGCATCATTGAAATCGTGGATTTCAATACACCACCCTGCAATGGCTCCAAGGCCCGATTTGCCTCTTAAAGATTTCTTTGCTTGGAAAGCTTTTCAGTGCACCATTTGTCAAGGGATTCAAAAGGAAAAATCAACTGTCAATGAACTTGCATAAGTGTTACTTGTTCCAAATTTAGAATTTGCGTCTGGAAAGCAAAACCCGGTTCTATTGGAAGTAGCTCCACAGTAATGGATATCCAGCCAACAAAACCTGAACCTGATTCTCACACCCTTGACATGGGGCCTGGCAAGAGCTTTCGGAATTTCAGATTTGATACTGCCTTGATTTTACAAGCAATGGAAGCTTCCTTTTCTTCTTGAAAGTCCAGCAACCTTTATGTAAAGTTTCACGTAACTGAATTGATTTCCCCTCTTTCATTGGTAGTATTCACTATCCATGCTAATTAGTTTGTTGCTGTACATCATGTTCCTCAAGTTGTCTGGTTGATTGAATAATATGTATATTGTGTACAGGAAGTATTTGTACCTAAATAGTTTTCTCAGTTAGTGTGGTATTATCTGTAAAACTAGAGTAAAGGTTCAATGTAAAAGTTAGACTACTCCCTACATTTGAACTCATTCAGACTCCGGGTCTCGGGCAGAATTAAACCGATTTATTTGGTAATGCCATTATAAATCTGTACAAAGTGGCTACTTTATGGTTACTGATTACTATGCAAGTGGTTGATAGATAGATA

Coding sequences of Glyma16g27200

Limit To All Plant Sequences

>Glyma16g27200.1   sequence type=CDS   gene model=Glyma16g27200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCAATCATCACCGTTCTTCCTCTAAGAACGGCCTTCCACCTCAAGAACTCCTTGACGATCTCTGCAGCCGATTTGTGCTAAATGTGCCAAAGGAAGATCTTCAGTCATTTGAAAGGATCTTGTTTCTTGTGGAGAATGCACATTGGTTTTATGAAGATAATTCCGTAGAAAATAATCCATCTCTGAAGTCATTAAATCTGAAGGAGTTCACTTCTTTATTGTTCAATAGCTGTGATGTTTTTCAGCCTTATGTGGCCCATATAGATGATATTTTCAAGGACTTCACTTCCTATAAGGTTCGAGTTCCTGTAACTGGGGCAATAATTCTTGATGAAACATATGAAAGGTGCTTGCTAGTGAAGGGATGGAAAGGTACAAGTTGGAGTTTCCCTCGTGGAAAAAAGAGCAAAGACGAAGAAGATCATGCATGTTCCATTAGAGAAGTCATGGAAGAAACAGGTTTTGATGTTTCAAAACTTCTGAACAAGGATGAATACCTTGAAGTTATTTTTGGACAACAGAGAGTGAGGCTTTACATTATTGCTGGAGTGAAAGATGATACGGCATTTGCTCCTCTTACCAAAAAGGAAATCAGTGAAATTGCATGGCACCGGCTTGATGATCTTCAACCAGCAAGTGATGAAGTGATATCTCGTAGCATCACCGGCCTTAAGCTTTATATGGTGGCCCCATTTCTGGCATCATTGAAATCGTGGATTTCAATACACCACCCTGCAATGGCTCCAAGGCCCGATTTGCCTCTTAAAGGAATTTGCGTCTGGAAAGCAAAACCCGGTTCTATTGGAAGTAGCTCCACAGTAATGGATATCCAGCCAACAAAACCTGAACCTGATTCTCACACCCTTGACATGGGGCCTGGCAAGAGCTTTCGGAATTTCAGATTTGATACTGCCTTGATTTTACAAGCAATGGAAGCTTCCTTTTCTTCTTGA

>Glyma16g27200.2   sequence type=CDS   gene model=Glyma16g27200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCAATCATCACCGTTCTTCCTCTAAGAACGGCCTTCCACCTCAAGAACTCCTTGACGATCTCTGCAGCCGATTTGTGCTAAATGTGCCAAAGGAAGATCTTCAGTCATTTGAAAGGATCTTGTTTCTTGTGGAGAATGCACATTGGTTTTATGAAGATAATTCCGTAGAAAATAATCCATCTCTGAAGTCATTAAATCTGAAGGAGTTCACTTCTTTATTGTTCAATAGCTGTGATGTTTTTCAGCCTTATGTGGCCCATATAGATGATATTTTCAAGGACTTCACTTCCTATAAGGTTCGAGTTCCTGTAACTGGGGCAATAATTCTTGATGAAACATATGAAAGGTGCTTGCTAGTGAAGGGATGGAAAGGTACAAGTTGGAGTTTCCCTCGTGGAAAAAAGAGCAAAGACGAAGAAGATCATGCATGTTCCATTAGAGAAGTCATGGAAGAAACAGGTTTTGATGTTTCAAAACTTCTGAACAAGGATGAATACCTTGAAGTTATTTTTGGACAACAGAGAGTGAGGCTTTACATTATTGCTGGAGTGAAAGATGATACGGCATTTGCTCCTCTTACCAAAAAGGAAATCAGTGAAATTGCATGGCACCGGCTTGATGATCTTCAACCAGCAAGTGATGAAGTGATATCTCGTAGCATCACCGGCCTTAAGCTTTATATGGTGGCCCCATTTCTGGCATCATTGAAATCGTGGATTTCAATACACCACCCTGCAATGGCTCCAAGGCCCGATTTGCCTCTTAAAGGTAACTCCTATTTCCCCCCAAACACTGGTCGGTTTTAA

>Glyma16g27200.3   sequence type=CDS   gene model=Glyma16g27200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCAATCATCACCGTTCTTCCTCTAAGAACGGCCTTCCACCTCAAGAACTCCTTGACGATCTCTGCAGCCGATTTGTGCTAAATGTGCCAAAGGAAGATCTTCAGTCATTTGAAAGGATCTTGTTTCTTGTGGAGAATGCACATTGGTTTTATGAAGATAATTCCGTAGAAAATAATCCATCTCTGAAGTCATTAAATCTGAAGGAGTTCACTTCTTTATTGTTCAATAGCTGTGATGTTTTTCAGCCTTATGTGGCCCATATAGATGATATTTTCAAGGACTTCACTTCCTATAAGGTTCGAGTTCCTGTAACTGGGGCAATAATTCTTGATGAAACATATGAAAGGTGCTTGCTAGTGAAGGGATGGAAAGGTACAAGTTGGAGTTTCCCTCGTGGAAAAAAGAGCAAAGACGAAGAAGATCATGCATGTTCCATTAGAGAAGTCATGGAAGAAACAGGTTTTGATGTTTCAAAACTTCTGAACAAGGATGAATACCTTGAAGTTATTTTTGGACAACAGAGAGTGAGGCTTTACATTATTGCTGGAGTGAAAGATGATACGGCATTTGCTCCTCTTACCAAAAAGGAAATCAGTGAAATTGCATGGCACCGGCTTGATGATCTTCAACCAGCAAGTGATGAAGTGATATCTCGTAGCATCACCGGCCTTAAGCTTTATATGGTGGCCCCATTTCTGGCATCATTGAAATCGTGGATTTCAATACACCACCCTGCAATGGCTCCAAGGCCCGATTTGCCTCTTAAAGATTTCTTTGCTTGGAAAGCTTTTCAGTGCACCATTTGTCAAGGGATTCAAAAGGAAAAATCAACTGTCAATGAACTTGCATAA

Predicted protein sequences of Glyma16g27200

Limit To All Plant Sequences

>Glyma16g27200.1   sequence type=predicted peptide   gene model=Glyma16g27200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSNHHRSSSKNGLPPQELLDDLCSRFVLNVPKEDLQSFERILFLVENAHWFYEDNSVENNPSLKSLNLKEFTSLLFNSCDVFQPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCLLVKGWKGTSWSFPRGKKSKDEEDHACSIREVMEETGFDVSKLLNKDEYLEVIFGQQRVRLYIIAGVKDDTAFAPLTKKEISEIAWHRLDDLQPASDEVISRSITGLKLYMVAPFLASLKSWISIHHPAMAPRPDLPLKGICVWKAKPGSIGSSSTVMDIQPTKPEPDSHTLDMGPGKSFRNFRFDTALILQAMEASFSS*

>Glyma16g27200.2   sequence type=predicted peptide   gene model=Glyma16g27200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSNHHRSSSKNGLPPQELLDDLCSRFVLNVPKEDLQSFERILFLVENAHWFYEDNSVENNPSLKSLNLKEFTSLLFNSCDVFQPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCLLVKGWKGTSWSFPRGKKSKDEEDHACSIREVMEETGFDVSKLLNKDEYLEVIFGQQRVRLYIIAGVKDDTAFAPLTKKEISEIAWHRLDDLQPASDEVISRSITGLKLYMVAPFLASLKSWISIHHPAMAPRPDLPLKGNSYFPPNTGRF*

>Glyma16g27200.3   sequence type=predicted peptide   gene model=Glyma16g27200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSNHHRSSSKNGLPPQELLDDLCSRFVLNVPKEDLQSFERILFLVENAHWFYEDNSVENNPSLKSLNLKEFTSLLFNSCDVFQPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCLLVKGWKGTSWSFPRGKKSKDEEDHACSIREVMEETGFDVSKLLNKDEYLEVIFGQQRVRLYIIAGVKDDTAFAPLTKKEISEIAWHRLDDLQPASDEVISRSITGLKLYMVAPFLASLKSWISIHHPAMAPRPDLPLKDFFAWKAFQCTICQGIQKEKSTVNELA*

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