SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G32890 | AT | Annotation by Michelle Graham. TAIR10: GATA transcription factor 9 | chr4:15875598-15876615 FORWARD LENGTH=308 | SoyBase | E_val: 3.00E-44 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0007623 | GO-bp | Annotation by Michelle Graham. GO Biological Process: circadian rhythm | SoyBase | N/A | ISS |
| GO:0009416 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to light stimulus | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| GO:0043565 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding | SoyBase | N/A | ISS |
| PTHR10071 | Panther | TRANSCRIPTION FACTOR GATA (GATA BINDING FACTOR) | JGI | ISS | |
| PTHR10071:SF113 | Panther | ZINC FINGER (GATA TYPE) FAMILY PROTEIN | JGI | ISS | |
| PF00320 | PFAM | GATA zinc finger | JGI | ISS | |
| UniRef100_B9T724 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: GATA transcription factor, putative n=1 Tax=Ricinus communis RepID=B9T724_RICCO | SoyBase | E_val: 1.00E-116 | ISS |
| UniRef100_UPI000233BECA | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233BECA related cluster n=1 Tax=unknown RepID=UPI000233BECA | SoyBase | E_val: 0 | ISS |
|
Glyma16g27171 not represented in the dataset |
Glyma16g27171 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g08145 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g155300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g27171.2 sequence type=transcript gene model=Glyma16g27171 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATAGAGTTGAAGATTGTTGTTGTTGTTTTGTAGCGGTGAAAATCCGTGAATGGGGTACGTTGTATTGTGTAGGGTGTGAGTGCATGGGACCCGTGTGCAATCAGAGTAGAGAGAGATTAAAGAATAACTTCAACGTCACGACACTGTGGGATAGTAAAAGACAGCTAGCAATGAACACGGAGCATCACCTAACGTTGTTGCCCATCACATTTTTCTTCTTTTCTATCACACTACTTTTGTTTTTCTTCTTCTCTTCCCTTCTAAGTTCTTACTTCTTATCACTCTTTTAAGGCTTCTTCACTCCTCTCTCTCTTTTCAAAACCCTCTCTTATTTCCTCTTTCTGAACATTACTGTACTTTGTTGTCATCATGGAGAAGAATAGCTACTAACGTTGTTCAGACTTTGGAGCTTCCTTTGTTTGTTGTCTCTTTCTGTGTTTCAGGGAAATAGAAAAAGGAAAATGATCGGAAACTTCATCGACGACATTGACTGCGGCAACTTCTTCGACCACATCGACGACCTCCTCGAATTCCCCGACGACGCCGCCGCCGCTGACACCTCCGCCGCCGCTCCTGTCCCTCCACCGGCGAACTTCTGGTCCGCCGAGTCCGACTCGCTCCCCGCCACCGACACGGTGTTTTCCGACAACTCCGTGACGGACCTCTCGGCGGAGCTCTCTGTTCCGTATGAAGACATTATGCAATTGGAATGGCTGTCCAATTTTGTTGAGGACTCTTTCTCTGGTGGGAGCATGACCATGAAGAAAGAGGAGCCACAATGCACCACCACCAAGGAGGACATAGCTCCTGCCCAGTTCCAGACAGCAAGCCCAGTATCAGTCCTTGAAAGCAGCAGTTTCTGCTCTGGGGAGAAGGCTGGCACGGAGATTAACATCTCCGTGCCATGTGGACGCGCGCGCAGCAAGCGCCCGCGTCCTGCAACCTTCAACCCCAATCCAGTGATGCAGCTCATCTCCCCTGCATCCTCCACTGGTGAGAACACGCAGCACAACGCTGCCAACACCTCCAAGGCATCATCGGATTCCGAGAATTTCGCTGAGTCGGTGATCAAGGCTCCTAAGCAGGCCTCTGGGGAGCACAAGAAGAAAAAGAAGATCAAAGTGACGTTCCCATCAGGTCAAGAGCGGAATGCACCATCACAGGCAATTAGGAAATGCTTGCACTGTGAGATAACCAAGACACCACAGTGGAGGGCAGGGCCAATGGGGCCGAAAACACTCTGCAATGCTTGTGGCGTGCGCTACAAGTCAGGCCGGCTTTTCCCCGAATATCGCCCTGCAGCGAGTCCAACGTTTTGTGCGGCCATGCACTCCAACTCCCATAAGAAGGTCCTTGAAATGAGGAACAAGACAGGCACCAAATCTGGCTTTGCAACTGTTTCTGCTGCCTCACCAGAACTCATTCCAAACACTAACAGCAGCCTTACCCTTGAATATATGTGAAAGGGGGAAAGGAAGGATTCTAGTTGGAGAATTCTCTAATTCTCTTTCAAGTCCTCTCTTGAGTCATGTCTTATACAAGGTTTTGAATTGCATTCTACAAACTGCAATGTTAAAGGTTTTAGAGGTGTCTGCAGCTGCGTTGTGGTTGCGGTTGTGACTGCATCAGCCATATTTGTCCACAATTTTGATGGCAACCGCAAGTTAAAACCTTAGTCTTTGTGTTATTTCTTGTCTGTCATTTATTTTTCTCATTGGATTTTTGTACAGGGCTGGAATGGGGGGATAGGAGCAAAATAGAACATGATCATATTGTAGCTATATTTAGAACTGAAGAACAAGGGATAGAGATATGCAAGTCAAAGAGGGTAGAGTCACCAGAGTGTTAGCCATTTTAGGTCTAGTAATTGTAGCAGTACTCAGGAGGAGTCTTTGTTACTTTTCTTATTCTCATCATTTTTCATTTTTTTTTCTTTAATTTCTGTTTCTAAATATCCCTCCCTGTAGCAAATTCTTTTTGCTGTTCATTTGTAGCAAAACTTATGAGTTGATCAGGAAAGGAACTTTTGGAATTTGCCTTCTTCCTTTTAATGTTTTGTCTTGTGCATATCCTTTCCTAATATCTGCAAGCTACAATGAGGAAGTATATGCCAGTTATGATTTTGAGTAATACTGCAGTTTTTTTTTT
>Glyma16g27171.1 sequence type=CDS gene model=Glyma16g27171 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATCGGAAACTTCATCGACGACATTGACTGCGGCAACTTCTTCGACCACATCGACGACCTCCTCGAATTCCCCGACGACGCCGCCGCCGCTGACACCTCCGCCGCCGCTCCTGTCCCTCCACCGGCGAACTTCTGGTCCGCCGAGTCCGACTCGCTCCCCGCCACCGACACGGTGTTTTCCGACAACTCCGTGACGGACCTCTCGGCGGAGCTCTCTGTTCCGTATGAAGACATTATGCAATTGGAATGGCTGTCCAATTTTGTTGAGGACTCTTTCTCTGGTGGGAGCATGACCATGAAGAAAGAGGAGCCACAATGCACCACCACCAAGGAGGACATAGCTCCTGCCCAGTTCCAGACAGCAAGCCCAGTATCAGTCCTTGAAAGCAGCAGTTTCTGCTCTGGGGAGAAGGCTGGCACGGAGATTAACATCTCCGTGCCATGTGGACGCGCGCGCAGCAAGCGCCCGCGTCCTGCAACCTTCAACCCCAATCCAGTGATGCAGCTCATCTCCCCTGCATCCTCCACTGGTGAGAACACGCAGCACAACGCTGCCAACACCTCCAAGGCATCATCGGATTCCGAGAATTTCGCTGAGTCGGTGATCAAGGCTCCTAAGCAGGCCTCTGGGGAGCACAAGAAGAAAAAGAAGATCAAAGTGACGTTCCCATCAGGTCAAGAGCGGAATGCACCATCACAGGCAATTAGGAAATGCTTGCACTGTGAGATAACCAAGACACCACAGTGGAGGGCAGGGCCAATGGGGCCGAAAACACTCTGCAATGCTTGTGGCGTGCGCTACAAGTCAGGCCGGCTTTTCCCCGAATATCGCCCTGCAGCGAGTCCAACGTTTTGTGCGGCCATGCACTCCAACTCCCATAAGAAGGTCCTTGAAATGAGGAACAAGACAGGCACCAAATCTGGCTTTGCAACTGTTTCTGCTGCCTCACCAGAACTCATTCCAAACACTAACAGCAGCCTTACCCTTGAATATATGTGA >Glyma16g27171.2 sequence type=CDS gene model=Glyma16g27171 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATCGGAAACTTCATCGACGACATTGACTGCGGCAACTTCTTCGACCACATCGACGACCTCCTCGAATTCCCCGACGACGCCGCCGCCGCTGACACCTCCGCCGCCGCTCCTGTCCCTCCACCGGCGAACTTCTGGTCCGCCGAGTCCGACTCGCTCCCCGCCACCGACACGGTGTTTTCCGACAACTCCGTGACGGACCTCTCGGCGGAGCTCTCTGTTCCGTATGAAGACATTATGCAATTGGAATGGCTGTCCAATTTTGTTGAGGACTCTTTCTCTGGTGGGAGCATGACCATGAAGAAAGAGGAGCCACAATGCACCACCACCAAGGAGGACATAGCTCCTGCCCAGTTCCAGACAGCAAGCCCAGTATCAGTCCTTGAAAGCAGCAGTTTCTGCTCTGGGGAGAAGGCTGGCACGGAGATTAACATCTCCGTGCCATGTGGACGCGCGCGCAGCAAGCGCCCGCGTCCTGCAACCTTCAACCCCAATCCAGTGATGCAGCTCATCTCCCCTGCATCCTCCACTGGTGAGAACACGCAGCACAACGCTGCCAACACCTCCAAGGCATCATCGGATTCCGAGAATTTCGCTGAGTCGGTGATCAAGGCTCCTAAGCAGGCCTCTGGGGAGCACAAGAAGAAAAAGAAGATCAAAGTGACGTTCCCATCAGGTCAAGAGCGGAATGCACCATCACAGGCAATTAGGAAATGCTTGCACTGTGAGATAACCAAGACACCACAGTGGAGGGCAGGGCCAATGGGGCCGAAAACACTCTGCAATGCTTGTGGCGTGCGCTACAAGTCAGGCCGGCTTTTCCCCGAATATCGCCCTGCAGCGAGTCCAACGTTTTGTGCGGCCATGCACTCCAACTCCCATAAGAAGGTCCTTGAAATGAGGAACAAGACAGGCACCAAATCTGGCTTTGCAACTGTTTCTGCTGCCTCACCAGAACTCATTCCAAACACTAACAGCAGCCTTACCCTTGAATATATGTGA
>Glyma16g27171.1 sequence type=predicted peptide gene model=Glyma16g27171 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MIGNFIDDIDCGNFFDHIDDLLEFPDDAAAADTSAAAPVPPPANFWSAESDSLPATDTVFSDNSVTDLSAELSVPYEDIMQLEWLSNFVEDSFSGGSMTMKKEEPQCTTTKEDIAPAQFQTASPVSVLESSSFCSGEKAGTEINISVPCGRARSKRPRPATFNPNPVMQLISPASSTGENTQHNAANTSKASSDSENFAESVIKAPKQASGEHKKKKKIKVTFPSGQERNAPSQAIRKCLHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFCAAMHSNSHKKVLEMRNKTGTKSGFATVSAASPELIPNTNSSLTLEYM* >Glyma16g27171.2 sequence type=predicted peptide gene model=Glyma16g27171 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MIGNFIDDIDCGNFFDHIDDLLEFPDDAAAADTSAAAPVPPPANFWSAESDSLPATDTVFSDNSVTDLSAELSVPYEDIMQLEWLSNFVEDSFSGGSMTMKKEEPQCTTTKEDIAPAQFQTASPVSVLESSSFCSGEKAGTEINISVPCGRARSKRPRPATFNPNPVMQLISPASSTGENTQHNAANTSKASSDSENFAESVIKAPKQASGEHKKKKKIKVTFPSGQERNAPSQAIRKCLHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFCAAMHSNSHKKVLEMRNKTGTKSGFATVSAASPELIPNTNSSLTLEYM*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
