SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G71990 | AT | Annotation by Michelle Graham. TAIR10: fucosyltransferase 13 | chr1:27100345-27102097 FORWARD LENGTH=401 | SoyBase | E_val: 0 | ISS |
| GO:0006486 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein glycosylation | SoyBase | N/A | ISS |
| GO:0010493 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Lewis a epitope biosynthetic process | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0008417 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: fucosyltransferase activity | SoyBase | N/A | ISS |
| GO:0016757 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups | SoyBase | N/A | ISS |
| KOG2619 | KOG | Fucosyltransferase | JGI | ISS | |
| PTHR11929 | Panther | ALPHA-(1,3)-FUCOSYLTRANSFERASE | JGI | ISS | |
| PTHR11929:SF5 | Panther | FUCOSYLTRANSFERASE | JGI | ISS | |
| PF00852 | PFAM | Glycosyltransferase family 10 (fucosyltransferase) | JGI | ISS | |
| UniRef100_I1MNV8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1MNV8_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q599J3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Alpha 1,4 fucosyltransferase n=1 Tax=Populus tremula x Populus alba RepID=Q599J3_POPCN | SoyBase | E_val: 0 | ISS |
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Glyma16g27090 not represented in the dataset |
Glyma16g27090 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g08070 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g154600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g27090.1 sequence type=CDS gene model=Glyma16g27090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTATTAGTGTTGTCTACCATTCATTTCACATTTTTCACTTTGCACTCCGAAGAGAGGATGAGAGTTCCCAATTGTTCATCATTCTTCACTCTACCCCTACGTCATTTCATTACCTTAGCAAACACATTGGGTTTCATTCTCTTGATCTTGTTCATATCTGGGATCATTGAGTTCCCCTCTTTTTCTTTATTATCACAATTCTCAACCCAACCAATCAAAGACCAATCAAAGGCTTTCACCGACGTGGTTGGTGCATTCAAAAAGTGGGACTCCGAAGTGGGGTGTGCCCGATTCAAGAAAGAGATAAACCAACAAAGAAATGGTTCAAATTATGGTTTTTCTACTTCTTTGCAAGATCAATTTGGTGGCCAATTGGAATGTGGGGTGCTGAAAATGAAACATGTGAGCATCTTGGTGAAAGGGTGGACATGGATTCCTGACAATTTAAATAACATGTACATTTGCCCATGTGGATTGAGTTGCTTGTGGACAAAATCACTGGTTCTTGCTGACAACCCTGATGCCTTCTTGTTTGAAACGACTAAACCTCCGGCACAAAGAAGCATTGGACAACCACTTCGTGTATACATGGACCTTGAACCTAAAAGAAAGCGATCAGGTCGTGAAGAAATATTTATTAGTTATCATGCTAAAGATGATTTGCAATCAACCTATGCCAGTTCCCTATTCCATAATGGTCGAAATTACCATATTTCTTCCCATAAGAACAATGTCCCACTTGTTTATTGGTCTTCTTTCCCTTGTACAACTCAAAGGAACAAACTTGCCCACAAAATCCTTAGTTTATTGCCTCACCATTCACTTGGCAAATGCCTAAATAATGTTGGAGGAAAAAATAAGGCACCACGTTTATATCCTGAATGTGTAGATAATGCTGCAAAACTTACCAAATGGTGGAATCATTTACACTGTGTGATGTCTCACTACAAGTTTGTCCTTGTAATTGAGGGCACTTGGACTGAGAGTTATATTACAGAAAAGATATTTTATGCCTTAGACTCTGGTGCAATTCCAATCTATTTTGGTGCTCCAAATATCATGGATTTTGTCCCTCCTCATTCAATAATAGAAGGGGTGAAATTCAAGTCAATGGAAGAATTGGCTTCGTATGTGAAGGCCATAGCAGATGATCCAATAGCCTATGGAGAATTCCATGCATGGAGAAGATGTGGTGTGTTGGGTAACTATGCAAAAACTAGAGCACTGAGCCTTGACACCTTACCTTGTCGGTTATGTCATGCTATTAGCAAAAAAGGGGGAAGAAATGCAGATGCCTAG
>Glyma16g27090.1 sequence type=predicted peptide gene model=Glyma16g27090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLLVLSTIHFTFFTLHSEERMRVPNCSSFFTLPLRHFITLANTLGFILLILFISGIIEFPSFSLLSQFSTQPIKDQSKAFTDVVGAFKKWDSEVGCARFKKEINQQRNGSNYGFSTSLQDQFGGQLECGVLKMKHVSILVKGWTWIPDNLNNMYICPCGLSCLWTKSLVLADNPDAFLFETTKPPAQRSIGQPLRVYMDLEPKRKRSGREEIFISYHAKDDLQSTYASSLFHNGRNYHISSHKNNVPLVYWSSFPCTTQRNKLAHKILSLLPHHSLGKCLNNVGGKNKAPRLYPECVDNAAKLTKWWNHLHCVMSHYKFVLVIEGTWTESYITEKIFYALDSGAIPIYFGAPNIMDFVPPHSIIEGVKFKSMEELASYVKAIADDPIAYGEFHAWRRCGVLGNYAKTRALSLDTLPCRLCHAISKKGGRNADA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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