Glyma16g27040 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma16g27040

Feature Type:	gene_model
Chromosome:	Gm16
Start:	31089979
stop:	31090989
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g27040

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G19790	AT	Annotation by Michelle Graham. TAIR10: related to AP2 11 \| chr5:6689271-6690032 REVERSE LENGTH=253	SoyBase	E_val: 6.00E-35	ISS
GO:0000302	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to reactive oxygen species	SoyBase	N/A	ISS
GO:0009723	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus	SoyBase	N/A	ISS
GO:0035865	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to potassium ion	SoyBase	N/A	ISS
GO:0048528	GO-bp	Annotation by Michelle Graham. GO Biological Process: post-embryonic root development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
PF00847	PFAM	AP2 domain	JGI		ISS
UniRef100_A9Y0K8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ERN2 n=1 Tax=Medicago truncatula RepID=A9Y0K8_MEDTR	SoyBase	E_val: 6.00E-71	ISS
UniRef100_I1MNV3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MNV3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma16g27040

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma16g27040

Paralog	Evidence	Comments
Glyma02g08020	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma16g27040 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g154100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g27040

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma16g27040

Limit To All Plant Sequences

>Glyma16g27040.1   sequence type=CDS   gene model=Glyma16g27040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAATTCAATTCCAGCATCCAAAGCAGCACTTGAGAGCAAACACATCAAAAGGAGGCAAAGTATTCAAAGGGAGAAACAACAACAAAACAAAAAGCAAGTATGTTGGGGTGAGGCAAAGAGCATCAGGGAAATGGGTTGCTGAGATCAAAGACACAACACAAAAGATAAGAATGTGGCTTGGCACATATGAGACTGCAGAGGAAGCAGCCAGGGCTTATGATGAAGCTGCATGCCTCCTTCGTGGATCCAACACTCGCACCAACTTCATCACACGTGTGTCCCTCGATTCCCCTCTCGCTTCCAGGATTCAGAATCTTCTCAACAGCAGAAATGGTACCAAAACCAAACATCAAGAACAAGATGTGGAAACTTGTCACACAAGGATCAAGAGCAACCGACAAGAGTCGTCGGTTGCTCTAGCAGAAGGAACTTGTCCTCCACAACATGATGAATTAAGATTTGAATCTTCGTTGGAAGACATGTCCACGTTTAGTATCCAACCGTATATTGATCAGGATTGTCTCCAAAAGAAAATACTTGTGGAAAACGAGAAAAAAAGAAGGGTCAACAGCACCACTAGTACTGCAAGTGCTAGTACTAGTAATAGTACTAATTCAAGCAATAATAGTGACACATGTGAGAACTCACTTTCTAGTGAGACAACACAAAACACCCAACAATTTGATGATGATGATGATGCTTATAGGCCTGATTTGAGCAATTTCATAGGGTCTGAGTCAGGTTCTCAGAACAATCCTTCATGGGGATTTGAACCTTCTTCTTTTGTTCATTTTCCATTTAGCCAAGTAATGGATGTGGCAAACCTGCCTGATATAGCTGGCTTGGAGCTTCCAGATTTTGAAAGGATGAAAGTTGAAAGGCAAATATCAGCTTCACTTTATGCAATTAATGGTGTGCAAGAGTACATGGACACTGTCACTGTTCAAGACTCTAATAATAATGTAGCTATCTGGGATTTTCCACCCTTGTGCTCATTTTTGTGTTAA

Predicted protein sequences of Glyma16g27040

Limit To All Plant Sequences

>Glyma16g27040.1   sequence type=predicted peptide   gene model=Glyma16g27040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEIQFQHPKQHLRANTSKGGKVFKGRNNNKTKSKYVGVRQRASGKWVAEIKDTTQKIRMWLGTYETAEEAARAYDEAACLLRGSNTRTNFITRVSLDSPLASRIQNLLNSRNGTKTKHQEQDVETCHTRIKSNRQESSVALAEGTCPPQHDELRFESSLEDMSTFSIQPYIDQDCLQKKILVENEKKRRVNSTTSTASASTSNSTNSSNNSDTCENSLSSETTQNTQQFDDDDDAYRPDLSNFIGSESGSQNNPSWGFEPSSFVHFPFSQVMDVANLPDIAGLELPDFERMKVERQISASLYAINGVQEYMDTVTVQDSNNNVAIWDFPPLCSFLC*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain