SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G18170 | AT | Annotation by Michelle Graham. TAIR10: glutamate dehydrogenase 1 | chr5:6006172-6008248 FORWARD LENGTH=411 | SoyBase | E_val: 0 | ISS |
| GO:0006520 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular amino acid metabolic process | SoyBase | N/A | ISS |
| GO:0006807 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nitrogen compound metabolic process | SoyBase | N/A | ISS |
| GO:0009646 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to absence of light | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0046686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cadmium ion | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0004353 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: glutamate dehydrogenase [NAD(P)+] activity | SoyBase | N/A | ISS |
| GO:0005507 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: copper ion binding | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| GO:0016639 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor | SoyBase | N/A | ISS |
| GO:0050897 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cobalt ion binding | SoyBase | N/A | ISS |
| KOG2250 | KOG | Glutamate/leucine/phenylalanine/valine dehydrogenases | JGI | ISS | |
| PTHR11606 | Panther | GLUTAMATE DEHYDROGENASE | JGI | ISS | |
| PF00208 | PFAM | Glutamate/Leucine/Phenylalanine/Valine dehydrogenase | JGI | ISS | |
| PF02812 | PFAM | Glu/Leu/Phe/Val dehydrogenase, dimerisation domain | JGI | ISS | |
| UniRef100_I1MNU3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Glutamate dehydrogenase n=1 Tax=Glycine max RepID=I1MNU3_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MNU3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Glutamate dehydrogenase n=1 Tax=Glycine max RepID=I1MNU3_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma16g26940 not represented in the dataset |
Glyma16g26940 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g07940 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g153400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g26940.1 sequence type=CDS gene model=Glyma16g26940 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAATGCACTAGCAGCCACCAACAGGAACTTTAGGCTGGCCTCTAGGCTCCTTGGATTGGATTCCAAGCTTGAGAAAAGTTTGCTGATTCCATTTAGAGAAATCAAGGTTGAATGTACCATCCCCAAAGATGATGGCAGCTTGGCCACTTTTGTTGGATTCAGGATTCAACATGATAATGCTAGAGGCCCCATGAAAGGAGGGATCAGATACCATCCTGAGGTTGAACCAGATGAAGTGAATGCTTTGGCACAACTAATGACATGGAAGACAGCTGTAGCAAATATACCATATGGTGGTGCCAAAGGAGGAATAGGGTGTGACCCTGCAGATTTAACTGTGTCAGAGTTAGAAAGACTCACTAGAGTTTTTACCCAGAAAATTCATGATCTGATTGGAGTTCAGACAGATGTGCCTGCACCTGATATGGGAACAGGACCACAGACTATGGCATGGATTCTAGATGAGTATTCCAAATTTCATGGCCACTCTCCTGCAGTAGTGACTGGGAAACCTGTAGAACTCGGTGGATCTCTAGGCAGAGATGCAGCTACTGGACGAGGAGTCCTCTTTGCAACGGAGGCTTTGCTTAAGGAGCATGGGATGAGTGTATCCGGACAGCGGTTTATCATACAGGGATTTGGAAATGTGGGGTCTTGGGCTGCCCAATTGATCAGTGAGAAAGGTGGAAAAGTTGTTGCAGTGAGTGACATAACTGGGGCCATAAAGAATACCAATGGCCTTGACATACCAAGCTTGCTCAAACATTCTAGAGAACACAGGGGAGTCAAAGGATTCCATGGTGGTGATGCAATTGACCCCAACTCAATATTGGTTGAAGACTGTGATGTTCTTGTCCCAGCAGCTCTTGGTGGAGTCATCAATAGGGAAAACGCAAATGAGATTAAGGCCAAATTTATTGTTGAAGCAGCCAATCACCCAACTGACCCGGAGGCTGATGAGATTCTGAAAAAGAAAGGGGTTGTGATCCTCCCAGATATATTTGCAAATTCAGGAGGAGTCACAGTTAGCTACTTTGAGTGGGTGCAGAACATTCAAGGGTTCATGTGGGATGAGGAGAAGGTGAACAACGAGCTAAAGACATACATGACTAAAGGGTTCAAAGATGTGAAGGAGATGTGCAAAACCCATAATTGTGATCTTCGTATGGGAGCATTCACCCTTGCAGTTAACCGTGTGGCAAGGGCCACTGTACTTAGGGGTTGGGAAGCTTGA
>Glyma16g26940.1 sequence type=predicted peptide gene model=Glyma16g26940 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNALAATNRNFRLASRLLGLDSKLEKSLLIPFREIKVECTIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVEPDEVNALAQLMTWKTAVANIPYGGAKGGIGCDPADLTVSELERLTRVFTQKIHDLIGVQTDVPAPDMGTGPQTMAWILDEYSKFHGHSPAVVTGKPVELGGSLGRDAATGRGVLFATEALLKEHGMSVSGQRFIIQGFGNVGSWAAQLISEKGGKVVAVSDITGAIKNTNGLDIPSLLKHSREHRGVKGFHGGDAIDPNSILVEDCDVLVPAALGGVINRENANEIKAKFIVEAANHPTDPEADEILKKKGVVILPDIFANSGGVTVSYFEWVQNIQGFMWDEEKVNNELKTYMTKGFKDVKEMCKTHNCDLRMGAFTLAVNRVARATVLRGWEA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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