Glyma16g26820 - SoyBase

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Report for Sequence Feature Glyma16g26820

Feature Type:	gene_model
Chromosome:	Gm16
Start:	30921260
stop:	30924848
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g26820

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G04030	AT	Annotation by Michelle Graham. TAIR10: Homeodomain-like superfamily protein \| chr3:1042920-1044574 REVERSE LENGTH=394	SoyBase	E_val: 2.00E-125	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PF00249	PFAM	Myb-like DNA-binding domain	JGI		ISS
UniRef100_B9SHH4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9SHH4_RICCO	SoyBase	E_val: 5.00E-156	ISS
UniRef100_UPI000233DF0D	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233DF0D related cluster n=1 Tax=unknown RepID=UPI000233DF0D	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma16g26820

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma16g26820

Paralog	Evidence	Comments
Glyma02g07790	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma16g26820 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g152200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g26820

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma16g26820

Limit To All Plant Sequences

>Glyma16g26820.3   sequence type=transcript   gene model=Glyma16g26820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTGCATTCAGCCAATCCTCATTGGCATTATTGATGGTATTACTAGGTAAAATCATCTACCTTTAAATTGTCTCAATTATCTACGCTAGTGGCAAGGACTAAGGAGTTCCAAGCCAAGAATATTTCTTGAAAAACATAGGGGGAGAAGTGTGGTTTCTGATGCTTTCAAGGAAAAAGGAAAAGTTGATTCTATAATTCAAGTCACAAAATTCTTCTCTAAACTTTTGGAATAAGATTCCTGCATTTGCCAGTGGGACAAAAACAAATGCAGGTGTACACTGATATAAATTGATGGGTCAATTTTGATACCAAATGCAACGTGTGAGGTGAGGTGTCCCAGAAAGTATAATGCACACAATTCCAATGGACAAGTGCTTTCTCTAAATCAAAAGTGGAGGTGAAGAGAGCCCACAATGAAGAAAGTAGGAAGAATGCCATCTCTTTTTAAGTAGCTATGAAATATATTGGATCAAGTTCAGTTTTGAGTTGCTTCTGTCCAAGATTCTATGCTTCACAAGGCCACTTTCCTAAGGGCATTTTCTTTATAAGGACATCTTTGAGTACAACCAAGGCTTGTGAAAATCTTGTCAAGGAGAAAAAAGACATGCAAGAGCAGTTGTAGAAACTTTCATGTATTTTAGTTGAAACACCAAAGAAGTGCTCTTCAAGAATACAGGACAATCAAATTTCACTTTAGCTGTTTGTATCCAGAAGGAGTAATACTCAACAGATAATGTACTATCAGCAGCAGCAACAAGCTAAGAACATGCATGCTTTAAGGATGCACAGCCCCACTGAGAGGCATATGATGTTGCAAGGAGGCAATGGAGCTGGTGATCCAGGACTTGTTCTCTCAACTGATGCTAAGCCTAGACTAAAATGGACACCAGATCTTCATGAAAGGTTCATCGAAGCAGTCAATCAACTCGGAGGAGCAGACAAAGCTACACCAAAAACAGTACTGAAACTAATGGGGATTCCTGGACTTACTCTCTACCACTTAAAGAGTCATCTACAGAAGTACAGGATCAGTAAAAATATGCATGGACAAACCAATACTAGCAACAATAAAATTGCATCAACCATGGAAGCAGCAACCGGAATTTCAGAAGCAAGTGGAGTTCAAATGAAACATTTAAGCATAGGCCTCCAGACAAACAAAAATTCAGAAATAAATGATGCATTACAGATGCAAATTGAAGTACAAAGAAGACTACATGAGCAGCTTGAGGTACAGAGACACTTACAGCTAAGGATAGAGGCACAAGGGAAGTACCTTCAGGCAGTGTTGGAAAAAGCACAAGAGACACTAGGAAGACAAAATTTAGGCGCTGAGGGAGTTGAAGCAGCCAAAGTTCAACTATCTGAACTGGCATCCAGAGTATCCCCTCAAAGCCTTGACTCTAAATTTTCAGAACTGAAAGAATTGCAGGTTTTGTGGCCTCAACAAACACAAGAAGGCCAAGCCACTGATTGTTCAATGGGAAGTTTCTTAAACTATAGTGAGGAATCTCAAAGAGACAGAGAAACACATAGCATGAACCTGAATTTGAGAGCCTGTAATGGCCCTCCATTTTCAGTTTCAAAAGGGTGTGCAGAAGAGTCTATGCATTTAAAGCCTGATTACAGATTGTGTGATGAAGTAAAGGAGAATATGATGTTTCTTTCCTCATCAAGTAATAGTAAAGTAGTGAAGGGTGATTTTTTATCAGAGAGGCCATCAAGCCTCTTGTCCATGAATGTAGGAGTTCAAGAAGAAGAAAATTTTGGTAGAACAACGGTTCCAAAGGAAGAAGGTTGGAAGAGAAGAGAGAGCACTGAAACTGGAAGAGTGCCAGTTAAATTGAACTACGAGAAGATTTCTCAAGATTATAGACTTGCAAACTTTGATGTGAAACTGGACCTGAATTCCCATGATGATAATGATGCTTCTTCCCACTGCCAACAGTTTGATTTGAACGGTTTCAGCTGGAATTGCTAGGACTTACCACAGTATGTAACATTTGGACATGAAAGGCTAAGAAGGTTTCATCTTTAGTTCCTACTCCATATGAGTTTTCATTTTTGGTGAGTAACTTGCATCAAGTTTTTGGCATAAGCCAATTACAACCCATTGAAAATAACTGAGATGAACAGAATAATTCGCTCCATCCAATATAGACTTGCATGTAGAATTACTATGTACACTACATCAAACAAAAGTGAGTAGAGTATACACTATGACCCTTTACATGTGTGATGTTAATTCAAGAGTTCAAAGGTTATTTTCAAACTGATTATATTAAAAAATGAAGCAGTAAAAGCCCATTTCTTTTGTGGCAAAGTGGCATCCAAATT

Coding sequences of Glyma16g26820

Limit To All Plant Sequences

>Glyma16g26820.2   sequence type=CDS   gene model=Glyma16g26820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTACTATCAGCAGCAGCAACAAGCTAAGAACATGCATGCTTTAAGGATGCACAGCCCCACTGAGAGGCATATGATGTTGCAAGGAGGCAATGGAGCTGGTGATCCAGGACTTGTTCTCTCAACTGATGCTAAGCCTAGACTAAAATGGACACCAGATCTTCATGAAAGGTTCATCGAAGCAGTCAATCAACTCGGAGGAGCAGACAAAGCTACACCAAAAACAGTACTGAAACTAATGGGGATTCCTGGACTTACTCTCTACCACTTAAAGAGTCATCTACAGAAGTACAGGATCAGTAAAAATATGCATGGACAAACCAATACTAGCAACAATAAAATTGCATCAACCATGGAAGCAGCAACCGGAATTTCAGAAGCAAGTGGAGTTCAAATGAAACATTTAAGCATAGGCCTCCAGACAAACAAAAATTCAGAAATAAATGATGCATTACAGATGCAAATTGAAGTACAAAGAAGACTACATGAGCAGCTTGAGCAGGTACAGAGACACTTACAGCTAAGGATAGAGGCACAAGGGAAGTACCTTCAGGCAGTGTTGGAAAAAGCACAAGAGACACTAGGAAGACAAAATTTAGGCGCTGAGGGAGTTGAAGCAGCCAAAGTTCAACTATCTGAACTGGCATCCAGAGTATCCCCTCAAAGCCTTGACTCTAAATTTTCAGAACTGAAAGAATTGCAGGTTTTGTGGCCTCAACAAACACAAGAAGGCCAAGCCACTGATTGTTCAATGGGAAGTTTCTTAAACTATAGTGAGGAATCTCAAAGAGACAGAGAAACACATAGCATGAACCTGAATTTGAGAGCCTGTAATGGCCCTCCATTTTCAGTTTCAAAAGGGTGTGCAGAAGAGTCTATGCATTTAAAGCCTGATTACAGATTGTGTGATGAAGTAAAGGAGAATATGATGTTTCTTTCCTCATCAAGTAATAGTAAAGTAGTGAAGGGTGATTTTTTATCAGAGAGGCCATCAAGCCTCTTGTCCATGAATGTAGGAGTTCAAGAAGAAGAAAATTTTGGTAGAACAACGGTTCCAAAGGAAGAAGGTTGGAAGAGAAGAGAGAGCACTGAAACTGGAAGAGTGCCAGTTAAATTGAACTACGAGAAGATTTCTCAAGATTATAGACTTGCAAACTTTGATGTGAAACTGGACCTGAATTCCCATGATGATAATGATGCTTCTTCCCACTGCCAACAGTTTGATTTGAACGGTTTCAGCTGGAATTGCTAG

>Glyma16g26820.3   sequence type=CDS   gene model=Glyma16g26820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTACTATCAGCAGCAGCAACAAGCTAAGAACATGCATGCTTTAAGGATGCACAGCCCCACTGAGAGGCATATGATGTTGCAAGGAGGCAATGGAGCTGGTGATCCAGGACTTGTTCTCTCAACTGATGCTAAGCCTAGACTAAAATGGACACCAGATCTTCATGAAAGGTTCATCGAAGCAGTCAATCAACTCGGAGGAGCAGACAAAGCTACACCAAAAACAGTACTGAAACTAATGGGGATTCCTGGACTTACTCTCTACCACTTAAAGAGTCATCTACAGAAGTACAGGATCAGTAAAAATATGCATGGACAAACCAATACTAGCAACAATAAAATTGCATCAACCATGGAAGCAGCAACCGGAATTTCAGAAGCAAGTGGAGTTCAAATGAAACATTTAAGCATAGGCCTCCAGACAAACAAAAATTCAGAAATAAATGATGCATTACAGATGCAAATTGAAGTACAAAGAAGACTACATGAGCAGCTTGAGGTACAGAGACACTTACAGCTAAGGATAGAGGCACAAGGGAAGTACCTTCAGGCAGTGTTGGAAAAAGCACAAGAGACACTAGGAAGACAAAATTTAGGCGCTGAGGGAGTTGAAGCAGCCAAAGTTCAACTATCTGAACTGGCATCCAGAGTATCCCCTCAAAGCCTTGACTCTAAATTTTCAGAACTGAAAGAATTGCAGGTTTTGTGGCCTCAACAAACACAAGAAGGCCAAGCCACTGATTGTTCAATGGGAAGTTTCTTAAACTATAGTGAGGAATCTCAAAGAGACAGAGAAACACATAGCATGAACCTGAATTTGAGAGCCTGTAATGGCCCTCCATTTTCAGTTTCAAAAGGGTGTGCAGAAGAGTCTATGCATTTAAAGCCTGATTACAGATTGTGTGATGAAGTAAAGGAGAATATGATGTTTCTTTCCTCATCAAGTAATAGTAAAGTAGTGAAGGGTGATTTTTTATCAGAGAGGCCATCAAGCCTCTTGTCCATGAATGTAGGAGTTCAAGAAGAAGAAAATTTTGGTAGAACAACGGTTCCAAAGGAAGAAGGTTGGAAGAGAAGAGAGAGCACTGAAACTGGAAGAGTGCCAGTTAAATTGAACTACGAGAAGATTTCTCAAGATTATAGACTTGCAAACTTTGATGTGAAACTGGACCTGAATTCCCATGATGATAATGATGCTTCTTCCCACTGCCAACAGTTTGATTTGAACGGTTTCAGCTGGAATTGCTAG

Predicted protein sequences of Glyma16g26820

Limit To All Plant Sequences

>Glyma16g26820.2   sequence type=predicted peptide   gene model=Glyma16g26820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYYQQQQQAKNMHALRMHSPTERHMMLQGGNGAGDPGLVLSTDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVLKLMGIPGLTLYHLKSHLQKYRISKNMHGQTNTSNNKIASTMEAATGISEASGVQMKHLSIGLQTNKNSEINDALQMQIEVQRRLHEQLEQVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNLGAEGVEAAKVQLSELASRVSPQSLDSKFSELKELQVLWPQQTQEGQATDCSMGSFLNYSEESQRDRETHSMNLNLRACNGPPFSVSKGCAEESMHLKPDYRLCDEVKENMMFLSSSSNSKVVKGDFLSERPSSLLSMNVGVQEEENFGRTTVPKEEGWKRRESTETGRVPVKLNYEKISQDYRLANFDVKLDLNSHDDNDASSHCQQFDLNGFSWNC*

>Glyma16g26820.3   sequence type=predicted peptide   gene model=Glyma16g26820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYYQQQQQAKNMHALRMHSPTERHMMLQGGNGAGDPGLVLSTDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVLKLMGIPGLTLYHLKSHLQKYRISKNMHGQTNTSNNKIASTMEAATGISEASGVQMKHLSIGLQTNKNSEINDALQMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNLGAEGVEAAKVQLSELASRVSPQSLDSKFSELKELQVLWPQQTQEGQATDCSMGSFLNYSEESQRDRETHSMNLNLRACNGPPFSVSKGCAEESMHLKPDYRLCDEVKENMMFLSSSSNSKVVKGDFLSERPSSLLSMNVGVQEEENFGRTTVPKEEGWKRRESTETGRVPVKLNYEKISQDYRLANFDVKLDLNSHDDNDASSHCQQFDLNGFSWNC*

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