Glyma16g26460 - SoyBase

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Report for Sequence Feature Glyma16g26460

Feature Type:	gene_model
Chromosome:	Gm16
Start:	30590208
stop:	30591533
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g26460

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G13910	AT	Annotation by Michelle Graham. TAIR10: Integrase-type DNA-binding superfamily protein \| chr5:4482450-4483085 REVERSE LENGTH=211	SoyBase	E_val: 1.00E-46	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009739	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to gibberellin stimulus	SoyBase	N/A	ISS
GO:0010030	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of seed germination	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PF00847	PFAM	AP2 domain	JGI		ISS
UniRef100_B9GMV6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AP2/ERF domain-containing transcription factor n=1 Tax=Populus trichocarpa RepID=B9GMV6_POPTR	SoyBase	E_val: 2.00E-56	ISS
UniRef100_I1MNQ2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MNQ2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma16g26460

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma16g26460

Paralog	Evidence	Comments
Glyma02g07460	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma16g26460 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g148700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g26460

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma16g26460

Limit To All Plant Sequences

>Glyma16g26460.1   sequence type=CDS   gene model=Glyma16g26460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAACCCTACACGTCATCACCATCATCCTCCAAGTCCAAAAAGAAGCCAACAACAACACAACAAGATCATGAAACAGCATGGGGAGGAAGGTACCTTGGAGTGAGGAGGAGGCCATGGGGAAGGTATGCGGCCGAAATTCGCGACCCTTCCACTAAGGAAAGACATTGGTTGGGCACGTTTGATACCGCAGAAGAGGCCGCCCTAGCATATGATAAGGCGGCCCGCTCCATGCGGGGCTCACGTGCTCGAACCAACTTCATCTATCCGGATACTCCTCCGGGTTCTTCTGTCACCTCCATCCTCTCTCCAGACGAGCAAACCCAAACCCAAATCCACCAGGCCCAAGAAGAGCTCTCCTCTCTATTCAACCCAAACCCGTTTCCACAACCTGACCCGAACCCGCAATTTTCCTTATGCGGGTTTTCGGGTATCCCGAACACTCCTACATTTTCTGCCACCGAAGAAATTGCCTCATCCGGTGGCTATAGCTACAGTTATGGATACACCGAAGGAGGAACCGGCGTGGAGAGTTCACATTTTAAGCTCTTTGATGATGGTGAAACGCAGCTTCCACCATTGCCACCGGATATCACAAGCTCCATGGGCTATGAAATGAGTAATGGGCTTTATGGAAACGATGTCGGGTTTTCGGATCCAAGTTGCGGAGCTAATGCTTCCGGGTCGGGTTACCCGTATTCGGGGTTCGAATCAGGTGATTACGTGGTGCATAGTCCACTCTTTAGTGCAATGCCATCAGTGTCAGATAATGTGGCAACGGGCCATGAGGGTTTTGATTTGGGAAGCTCTTCTTATTTCTTCTGA

Predicted protein sequences of Glyma16g26460

Limit To All Plant Sequences

>Glyma16g26460.1   sequence type=predicted peptide   gene model=Glyma16g26460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKPYTSSPSSSKSKKKPTTTQQDHETAWGGRYLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDKAARSMRGSRARTNFIYPDTPPGSSVTSILSPDEQTQTQIHQAQEELSSLFNPNPFPQPDPNPQFSLCGFSGIPNTPTFSATEEIASSGGYSYSYGYTEGGTGVESSHFKLFDDGETQLPPLPPDITSSMGYEMSNGLYGNDVGFSDPSCGANASGSGYPYSGFESGDYVVHSPLFSAMPSVSDNVATGHEGFDLGSSSYFF*

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