Glyma16g26360 - SoyBase

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Report for Sequence Feature Glyma16g26360

Feature Type:	gene_model
Chromosome:	Gm16
Start:	30496793
stop:	30504328
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g26360

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G19340	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF3754) \| chr3:6701387-6704071 REVERSE LENGTH=487	SoyBase	E_val: 0	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
PF12576	PFAM	Protein of unknown function (DUF3754)	JGI		ISS
UniRef100_I1MNP5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MNP5_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q2R3B7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Oryza sativa Japonica Group RepID=Q2R3B7_ORYSJ	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma16g26360

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma16g26360 not represented in the dataset	Glyma16g26360 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma16g26360

Paralog	Evidence	Comments
Glyma02g07370	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma16g26360 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g147900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g26360

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma16g26360

Limit To All Plant Sequences

>Glyma16g26360.2   sequence type=transcript   gene model=Glyma16g26360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACGTATACTTTTCTTTTTACCTTTTTCACTTGATATAATGCTCTGCCTCTATTGTGCTTTCACAATATGAACATTTAAATAAATAGTAATAAAAAATGGACAAAGGAAAAATACTATGAAACATCAATGAATCTATTTTGAGAATATAGAAGAAAGTTTGATTAATAAATCAATTTCACAAGTACGCACCATAATAATTTCACTTTTTCTGAACGTATGAACAATCGCTTAGCCATGCACGTGAATTCCCCTTCCGAAGAAAGCGAACATCTGAGTGTGTTTTCTAAACAACGTTGGTTATGTCATATGTGACCGACCAACACGCCGGTGGAAGCATCTTATGCCTAGTTTGCGAAGCATGAATCTTATTCCATTATGTGTTGCCAAGAAACACTTTGTTTGGTCTTTCACAGATCCTTTAGAACGTGTCTCATATAAGTTAAGGTTCCTTTGAGCACTCTTTGATTCGTATTTCAATCTTCGGGACTAGTTTGGTGGGTTGAATACAAAAAATGTCCCATTCGGGTTTGGAAGAAATGGGCAACGAGAAGAAGAAGGAAGTGATTCGGATAGAGCGTGAATCGGTTATTCCAGTTTTGAAGCCTCAGCTCATCATGGCATTGGCCAACCTTATTATTATGGTGATAAAATTTTGTAGTTTTGATACAGATGAAATAACATAGAAACAGCTTTCTCCCAACACCCACACCCTCTTCCAAAAGCTGCTATTTTCTTTGTAGACTTGAGTCGTTTGGGTATTATGTGCAGAACATAGTGCTGACCGAGTTGAATTTTTGAAGCTCTGCAAGAGAATAGAGTATACCATTCGAGCTTGGTACCTTCTACAGTTTGAGGACATGATGCAACTCTATTCTCTCTTTGATCCTGTGTCCGGGGCTCAGAAGTTGGAACAGCAGAAGTTACCTCGTGAAGAAATTGATGTTCTTGAGCAAAATTTCTTGACTTACCTATTTGAGGTCATGAAAAAAAGCAACTTCAAGATTGCAACTCAAGAAGAGATTGATATTGCACTTTCTGGACAGTATATTCTAAATCTTCCAATTACAGTAAATGAATCTAAGCTTGACAAGGTTCTTTTGAAAAACTATTTTGAAGCACATCCTCACGATAACCTTCCAGATTCTTATGATAAGTATATTATTTTTCGGCGTGGCATTGGAATTGATCGAACAACTGATTACTTTGTCATGGAGAAAGTGGACATGCTCATAGCACGTTTTTGGTCATATATATTAAGAATAACCAGGTTGGAAAAGTTTTTATCCAGAAGGGCAAAAAGGCGTCGTAGGAAGGATCCCAAGAATGATGATGAAATTAACTTGGAGTTGGAAGATTTTCAGGATGATGTATATGAACGGATACGTCTTGAAAAAATGCCAATAAGTTTCGGTAGTTTGCTGAAAAAGACCACAATCCAAGAACCTACATTTGATAGGATTATTGTTGTGTACAGGCCAGCTAGCTCCAATTCAAAAAAAGAAAGAGGAATTTTTGTGAAGCATTTCAAGAACATTCCAATGGCTGATATGGAAATAGTTCTTCCAGAAAAGAAAAATCCTGGATTGACTCCAAAGGATTGGGTCAAGTTTCTTGCATCTGCAATGGTTGGGCTGGTTGCTGTAGCTAGTTCTCTTCATGTGGATTCAGCTGATTTGAGGGTCATTGGTGCCGTTCTCTCTACAGTACTTGGATATTTGGCCAAGACATACTTCACGTTCCAACAAAACTTGGTCCAATACCAAAATTTGATTACAAGGTCAATGTATGACAAACAACTGGACAGTGGAAAGGGTACACTTCTCCATTTATGTGATGATGTCATTCAACAGGAAGTTAAAGAGGTAATAATATCATTTTTCATTCTGATGGAGCAGGGAAAAGCTAATAGACAAGAACTCGATCAATGGTGCGAGGAGCTAATCAGAGAAGAGTTTGGAGAGAGCTGTAATTTTGACGTGGATGATGCAGTTAAGAAATTAGAGAAGTTCGGAATTGTCACCAAGGATATCATTGGCCGGTATCAATGCGTTGGGCTGAAAAGGGCTAACGAGATAATAGGCACCACCACTGAAGAACTTGTCCTTAAGGCAAGACAGGGGGGAAGCACCACTCCTTGATGGTGTCACATAATCTTATCCTCATAATTTCAGACTCCCTGTCTCATTTTTTAATTCTTTTTAAAAATATTTGCAATGCTTGTACAACCTTTAGTAAAACACACTTGAAATTCTAGGCCAACTTCATTCATTATTTTCATGAATATAATGTATTGACATTATCAATAGGGAAATAAGATTTACCTCAAATCCCTAATAAGATTTGCACTCGTTCACCTTGCCCCAGGCTCACATGTTTATGCTTCACAAACGATACCACAGCAACCATTCCAAGATCTCAGGGTCACATTTCTTAATAATATCTGAAGAGCAGTTTAAAATAGATTTGGACACAGTCTA

>Glyma16g26360.3   sequence type=transcript   gene model=Glyma16g26360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCACTATTTAGAAGTGTCCATGTTTCTTGGCCAAGATGTAAATGGCGAATAAGATTTAGAATAACAAAATATTCAGGTCATGAAAAAAAGCAACTTCAAGATTGCAACTCAAGAAGAGATTGATATTGCACTTTCTGGACAGTATATTCTAAATCTTCCAATTACAGTAAATGAATCTAAGCTTGACAAGGTTCTTTTGAAAAACTATTTTGAAGCACATCCTCACGATAACCTTCCAGATTCTTATGATAAGTATATTATTTTTCGGCGTGGCATTGGAATTGATCGAACAACTGATTACTTTGTCATGGAGAAAGTGGACATGCTCATAGCACGTTTTTGGTCATATATATTAAGAATAACCAGGTTGGAAAAGTTTTTATCCAGAAGGGCAAAAAGGCGTCGTAGGAAGGATCCCAAGAATGATGATGAAATTAACTTGGAGTTGGAAGATTTTCAGGATGATGTATATGAACGGATACGTCTTGAAAAAATGCCAATAAGTTTCGGTAGTTTGCTGAAAAAGACCACAATCCAAGAACCTACATTTGATAGGATTATTGTTGTGTACAGGCCAGCTAGCTCCAATTCAAAAAAAGAAAGAGGAATTTTTGTGAAGCATTTCAAGAACATTCCAATGGCTGATATGGAAATAGTTCTTCCAGAAAAGAAAAATCCTGGATTGACTCCAAAGGATTGGGTCAAGTTTCTTGCATCTGCAATGGTTGGGCTGGTTGCTGTAGCTAGTTCTCTTCATGTGGATTCAGCTGATTTGAGGGTCATTGGTGCCGTTCTCTCTACAGTACTTGGATATTTGGCCAAGACATACTTCACGTTCCAACAAAACTTGGTCCAATACCAAAATTTGATTACAAGGTCAATGTATGACAAACAACTGGACAGTGGAAAGGGTACACTTCTCCATTTATGTGATGATGTCATTCAACAGGAAGTTAAAGAGGTAATAATATCATTTTTCATTCTGATGGAGCAGGGAAAAGCTAATAGACAAGAACTCGATCAATGGTGCGAGGAGCTAATCAGAGAAGAGTTTGGAGAGAGCTGTAATTTTGACGTGGATGATGCAGTTAAGAAATTAGAGAAGTTCGGAATTGTCACCAAGGATATCATTGGCCGGTATCAATGCGTTGGGCTGAAAAGGGCTAACGAGATAATAGGCACCACCACTGAAGAACTTGTCCTTAAGGCAAGACAGGGGGGAAGCACCACTCCTTGATGGTGTCACATAATCTTATCCTCATAATTTCAGACTCCCTGTCTCATTTTTTAATTCTTTTTAAAAATATTTGCAATGCTTGTACAACCTTTAGTAAAACACACTTGAAATTCTAGGCCAACTTCATTCATTATTTTCATGAATATAATGTATTGACATTATCAATAGGGAAATAAGATTTACCTCAAATCCCTAATAAGATTTGCACTCGTTCACCTTGCCCCAGGCTCACATGTTTATGCTTCACAAACGATACCACAGCAACCATTCCAAGATCTCAGGGTCACATTTCTTAATAATATCTGAAGAGCAGTTTAAAATAGATTTGGACACAGTCTA

Coding sequences of Glyma16g26360

Limit To All Plant Sequences

>Glyma16g26360.1   sequence type=CDS   gene model=Glyma16g26360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCCATTCGGGTTTGGAAGAAATGGGCAACGAGAAGAAGAAGGAAGTGATTCGGATAGAGCGTGAATCGGTTATTCCAGTTTTGAAGCCTCAGCTCATCATGGCATTGGCCAACCTTATTAAACATAGTGCTGACCGAGTTGAATTTTTGAAGCTCTGCAAGAGAATAGAGTATACCATTCGAGCTTGGTACCTTCTACAGTTTGAGGACATGATGCAACTCTATTCTCTCTTTGATCCTGTGTCCGGGGCTCAGAAGTTGGAACAGCAGAAGTTACCTCGTGAAGAAATTGATGTTCTTGAGCAAAATTTCTTGACTTACCTATTTGAGGTCATGAAAAAAAGCAACTTCAAGATTGCAACTCAAGAAGAGATTGATATTGCACTTTCTGGACAGTATATTCTAAATCTTCCAATTACAGTAAATGAATCTAAGCTTGACAAGGTTCTTTTGAAAAACTATTTTGAAGCACATCCTCACGATAACCTTCCAGATTCTTATGATAAGTATATTATTTTTCGGCGTGGCATTGGAATTGATCGAACAACTGATTACTTTGTCATGGAGAAAGTGGACATGCTCATAGCACGTTTTTGGTCATATATATTAAGAATAACCAGGTTGGAAAAGTTTTTATCCAGAAGGGCAAAAAGGCGTCGTAGGAAGGATCCCAAGAATGATGATGAAATTAACTTGGAGTTGGAAGATTTTCAGGATGATGTATATGAACGGATACGTCTTGAAAAAATGCCAATAAGTTTCGGTAGTTTGCTGAAAAAGACCACAATCCAAGAACCTACATTTGATAGGATTATTGTTGTGTACAGGCCAGCTAGCTCCAATTCAAAAAAAGAAAGAGGAATTTTTGTGAAGCATTTCAAGAACATTCCAATGGCTGATATGGAAATAGTTCTTCCAGAAAAGAAAAATCCTGGATTGACTCCAAAGGATTGGGTCAAGTTTCTTGCATCTGCAATGGTTGGGCTGGTTGCTGTAGCTAGTTCTCTTCATGTGGATTCAGCTGATTTGAGGGTCATTGGTGCCGTTCTCTCTACAGTACTTGGATATTTGGCCAAGACATACTTCACGTTCCAACAAAACTTGGTCCAATACCAAAATTTGATTACAAGGTCAATGTATGACAAACAACTGGACAGTGGAAAGGGTACACTTCTCCATTTATGTGATGATGTCATTCAACAGGAAGTTAAAGAGGTAATAATATCATTTTTCATTCTGATGGAGCAGGGAAAAGCTAATAGACAAGAACTCGATCAATGGTGCGAGGAGCTAATCAGAGAAGAGTTTGGAGAGAGCTGTAATTTTGACGTGGATGATGCAGTTAAGAAATTAGAGAAGTTCGGAATTGTCACCAAGGATATCATTGGCCGGTATCAATGCGTTGGGCTGAAAAGGGCTAACGAGATAATAGGCACCACCACTGAAGAACTTGTCCTTAAGGCAAGACAGGGGGGAAGCACCACTCCTTGA

>Glyma16g26360.2   sequence type=CDS   gene model=Glyma16g26360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGCAACTCTATTCTCTCTTTGATCCTGTGTCCGGGGCTCAGAAGTTGGAACAGCAGAAGTTACCTCGTGAAGAAATTGATGTTCTTGAGCAAAATTTCTTGACTTACCTATTTGAGGTCATGAAAAAAAGCAACTTCAAGATTGCAACTCAAGAAGAGATTGATATTGCACTTTCTGGACAGTATATTCTAAATCTTCCAATTACAGTAAATGAATCTAAGCTTGACAAGGTTCTTTTGAAAAACTATTTTGAAGCACATCCTCACGATAACCTTCCAGATTCTTATGATAAGTATATTATTTTTCGGCGTGGCATTGGAATTGATCGAACAACTGATTACTTTGTCATGGAGAAAGTGGACATGCTCATAGCACGTTTTTGGTCATATATATTAAGAATAACCAGGTTGGAAAAGTTTTTATCCAGAAGGGCAAAAAGGCGTCGTAGGAAGGATCCCAAGAATGATGATGAAATTAACTTGGAGTTGGAAGATTTTCAGGATGATGTATATGAACGGATACGTCTTGAAAAAATGCCAATAAGTTTCGGTAGTTTGCTGAAAAAGACCACAATCCAAGAACCTACATTTGATAGGATTATTGTTGTGTACAGGCCAGCTAGCTCCAATTCAAAAAAAGAAAGAGGAATTTTTGTGAAGCATTTCAAGAACATTCCAATGGCTGATATGGAAATAGTTCTTCCAGAAAAGAAAAATCCTGGATTGACTCCAAAGGATTGGGTCAAGTTTCTTGCATCTGCAATGGTTGGGCTGGTTGCTGTAGCTAGTTCTCTTCATGTGGATTCAGCTGATTTGAGGGTCATTGGTGCCGTTCTCTCTACAGTACTTGGATATTTGGCCAAGACATACTTCACGTTCCAACAAAACTTGGTCCAATACCAAAATTTGATTACAAGGTCAATGTATGACAAACAACTGGACAGTGGAAAGGGTACACTTCTCCATTTATGTGATGATGTCATTCAACAGGAAGTTAAAGAGGTAATAATATCATTTTTCATTCTGATGGAGCAGGGAAAAGCTAATAGACAAGAACTCGATCAATGGTGCGAGGAGCTAATCAGAGAAGAGTTTGGAGAGAGCTGTAATTTTGACGTGGATGATGCAGTTAAGAAATTAGAGAAGTTCGGAATTGTCACCAAGGATATCATTGGCCGGTATCAATGCGTTGGGCTGAAAAGGGCTAACGAGATAATAGGCACCACCACTGAAGAACTTGTCCTTAAGGCAAGACAGGGGGGAAGCACCACTCCTTGA

>Glyma16g26360.3   sequence type=CDS   gene model=Glyma16g26360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAAAAAGCAACTTCAAGATTGCAACTCAAGAAGAGATTGATATTGCACTTTCTGGACAGTATATTCTAAATCTTCCAATTACAGTAAATGAATCTAAGCTTGACAAGGTTCTTTTGAAAAACTATTTTGAAGCACATCCTCACGATAACCTTCCAGATTCTTATGATAAGTATATTATTTTTCGGCGTGGCATTGGAATTGATCGAACAACTGATTACTTTGTCATGGAGAAAGTGGACATGCTCATAGCACGTTTTTGGTCATATATATTAAGAATAACCAGGTTGGAAAAGTTTTTATCCAGAAGGGCAAAAAGGCGTCGTAGGAAGGATCCCAAGAATGATGATGAAATTAACTTGGAGTTGGAAGATTTTCAGGATGATGTATATGAACGGATACGTCTTGAAAAAATGCCAATAAGTTTCGGTAGTTTGCTGAAAAAGACCACAATCCAAGAACCTACATTTGATAGGATTATTGTTGTGTACAGGCCAGCTAGCTCCAATTCAAAAAAAGAAAGAGGAATTTTTGTGAAGCATTTCAAGAACATTCCAATGGCTGATATGGAAATAGTTCTTCCAGAAAAGAAAAATCCTGGATTGACTCCAAAGGATTGGGTCAAGTTTCTTGCATCTGCAATGGTTGGGCTGGTTGCTGTAGCTAGTTCTCTTCATGTGGATTCAGCTGATTTGAGGGTCATTGGTGCCGTTCTCTCTACAGTACTTGGATATTTGGCCAAGACATACTTCACGTTCCAACAAAACTTGGTCCAATACCAAAATTTGATTACAAGGTCAATGTATGACAAACAACTGGACAGTGGAAAGGGTACACTTCTCCATTTATGTGATGATGTCATTCAACAGGAAGTTAAAGAGGTAATAATATCATTTTTCATTCTGATGGAGCAGGGAAAAGCTAATAGACAAGAACTCGATCAATGGTGCGAGGAGCTAATCAGAGAAGAGTTTGGAGAGAGCTGTAATTTTGACGTGGATGATGCAGTTAAGAAATTAGAGAAGTTCGGAATTGTCACCAAGGATATCATTGGCCGGTATCAATGCGTTGGGCTGAAAAGGGCTAACGAGATAATAGGCACCACCACTGAAGAACTTGTCCTTAAGGCAAGACAGGGGGGAAGCACCACTCCTTGA

Predicted protein sequences of Glyma16g26360

Limit To All Plant Sequences

>Glyma16g26360.1   sequence type=predicted peptide   gene model=Glyma16g26360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSHSGLEEMGNEKKKEVIRIERESVIPVLKPQLIMALANLIKHSADRVEFLKLCKRIEYTIRAWYLLQFEDMMQLYSLFDPVSGAQKLEQQKLPREEIDVLEQNFLTYLFEVMKKSNFKIATQEEIDIALSGQYILNLPITVNESKLDKVLLKNYFEAHPHDNLPDSYDKYIIFRRGIGIDRTTDYFVMEKVDMLIARFWSYILRITRLEKFLSRRAKRRRRKDPKNDDEINLELEDFQDDVYERIRLEKMPISFGSLLKKTTIQEPTFDRIIVVYRPASSNSKKERGIFVKHFKNIPMADMEIVLPEKKNPGLTPKDWVKFLASAMVGLVAVASSLHVDSADLRVIGAVLSTVLGYLAKTYFTFQQNLVQYQNLITRSMYDKQLDSGKGTLLHLCDDVIQQEVKEVIISFFILMEQGKANRQELDQWCEELIREEFGESCNFDVDDAVKKLEKFGIVTKDIIGRYQCVGLKRANEIIGTTTEELVLKARQGGSTTP*

>Glyma16g26360.2   sequence type=predicted peptide   gene model=Glyma16g26360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMQLYSLFDPVSGAQKLEQQKLPREEIDVLEQNFLTYLFEVMKKSNFKIATQEEIDIALSGQYILNLPITVNESKLDKVLLKNYFEAHPHDNLPDSYDKYIIFRRGIGIDRTTDYFVMEKVDMLIARFWSYILRITRLEKFLSRRAKRRRRKDPKNDDEINLELEDFQDDVYERIRLEKMPISFGSLLKKTTIQEPTFDRIIVVYRPASSNSKKERGIFVKHFKNIPMADMEIVLPEKKNPGLTPKDWVKFLASAMVGLVAVASSLHVDSADLRVIGAVLSTVLGYLAKTYFTFQQNLVQYQNLITRSMYDKQLDSGKGTLLHLCDDVIQQEVKEVIISFFILMEQGKANRQELDQWCEELIREEFGESCNFDVDDAVKKLEKFGIVTKDIIGRYQCVGLKRANEIIGTTTEELVLKARQGGSTTP*

>Glyma16g26360.3   sequence type=predicted peptide   gene model=Glyma16g26360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKKSNFKIATQEEIDIALSGQYILNLPITVNESKLDKVLLKNYFEAHPHDNLPDSYDKYIIFRRGIGIDRTTDYFVMEKVDMLIARFWSYILRITRLEKFLSRRAKRRRRKDPKNDDEINLELEDFQDDVYERIRLEKMPISFGSLLKKTTIQEPTFDRIIVVYRPASSNSKKERGIFVKHFKNIPMADMEIVLPEKKNPGLTPKDWVKFLASAMVGLVAVASSLHVDSADLRVIGAVLSTVLGYLAKTYFTFQQNLVQYQNLITRSMYDKQLDSGKGTLLHLCDDVIQQEVKEVIISFFILMEQGKANRQELDQWCEELIREEFGESCNFDVDDAVKKLEKFGIVTKDIIGRYQCVGLKRANEIIGTTTEELVLKARQGGSTTP*

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