Glyma16g26320 - SoyBase

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Report for Sequence Feature Glyma16g26320

Feature Type:	gene_model
Chromosome:	Gm16
Start:	30464359
stop:	30466805
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g26320

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G61890	AT	Annotation by Michelle Graham. TAIR10: Integrase-type DNA-binding superfamily protein \| chr5:24852639-24853744 REVERSE LENGTH=248	SoyBase	E_val: 6.00E-40	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0006865	GO-bp	Annotation by Michelle Graham. GO Biological Process: amino acid transport	SoyBase	N/A	ISS
GO:0050832	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to fungus	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PF00847	PFAM	AP2 domain	JGI		ISS
UniRef100_D8VD41	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ethylene response factor 14 n=1 Tax=Actinidia deliciosa RepID=D8VD41_ACTDE	SoyBase	E_val: 8.00E-38	ISS
UniRef100_I1MNP1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MNP1_SOYBN	SoyBase	E_val: 4.00E-175	ISS

Expression Patterns of Glyma16g26320

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma16g26320

Paralog	Evidence	Comments
Glyma02g07310	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma16g26320 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g147500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g26320

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma16g26320

Limit To All Plant Sequences

>Glyma16g26320.1   sequence type=CDS   gene model=Glyma16g26320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTACCAACCAAAACACCACCTTCTTCCCCCTCCCACATGGCCAAATAACTACTTCTGAATTTGTTAATAGCCAGAACAATCCATCCCAGGCTACAAATCAAGGCATTGATGATATTAGGAAAAAGCACTATAGAGGAGTTAGGCAGAGACCATGGGGCAAATGGGCAGCAGAAATAAGAGACCCTAAGAAAGCAGCTAGAGTGTGGCTTGGCACCTTTGACACGGCAGAGGCTGCAGCTATGGCTTATGATGCTGCTGCATTGAGGTTCAAAGGAAACAAAGCAAAGCTCAATTTTCCTGAACGTGTTGTTATGCCAATACCATCACAAACCAATACCAATTACAATAATAACAATACCACTTCTTCATCATCAGCTCCTACTACACAACCTTCTTCTCTTCCACCACCACCATCACAATCTCTACAAAATAGTAGCAATAATAATAGTTCTCTTTCATCAGAAGGGTTTCCAAATCTTGAGGAGTATGCAAGGTTGCTGAATTGTAGCGATGATGATGACTTTCAACGTGTTGCATTGGGGCTCTACCAGCATCACAATAATGAGGATTATATTTATGGTTCATCACAACCACCACCAGTGCCGTTTTTTGTGTCTTCTTATTCTTCTTCTTCTTCTGCAATGGCATCTTCATTTTCTGATTTTCTTGGTCAAGGAGGGAGTGGTTTTGATGAAGAGAATAAGAGGGGGTCGTAG

Predicted protein sequences of Glyma16g26320

Limit To All Plant Sequences

>Glyma16g26320.1   sequence type=predicted peptide   gene model=Glyma16g26320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSTNQNTTFFPLPHGQITTSEFVNSQNNPSQATNQGIDDIRKKHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAMAYDAAALRFKGNKAKLNFPERVVMPIPSQTNTNYNNNNTTSSSSAPTTQPSSLPPPPSQSLQNSSNNNSSLSSEGFPNLEEYARLLNCSDDDDFQRVALGLYQHHNNEDYIYGSSQPPPVPFFVSSYSSSSSAMASSFSDFLGQGGSGFDEENKRGS*

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