Glyma16g26220 - SoyBase

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Report for Sequence Feature Glyma16g26220

Feature Type:	gene_model
Chromosome:	Gm16
Start:	30376179
stop:	30381634
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g26220

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G12840	AT	Annotation by Michelle Graham. TAIR10: vacuolar ATP synthase subunit C (VATC) / V-ATPase C subunit / vacuolar proton pump C subunit (DET3) \| chr1:4375584-4378220 FORWARD LENGTH=375	SoyBase	E_val: 0	ISS
GO:0000902	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell morphogenesis	SoyBase	N/A	ISS
GO:0006007	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucose catabolic process	SoyBase	N/A	ISS
GO:0006511	GO-bp	Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0006816	GO-bp	Annotation by Michelle Graham. GO Biological Process: calcium ion transport	SoyBase	N/A	ISS
GO:0007030	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi organization	SoyBase	N/A	ISS
GO:0007033	GO-bp	Annotation by Michelle Graham. GO Biological Process: vacuole organization	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009809	GO-bp	Annotation by Michelle Graham. GO Biological Process: lignin biosynthetic process	SoyBase	N/A	ISS
GO:0009826	GO-bp	Annotation by Michelle Graham. GO Biological Process: unidimensional cell growth	SoyBase	N/A	ISS
GO:0009853	GO-bp	Annotation by Michelle Graham. GO Biological Process: photorespiration	SoyBase	N/A	ISS
GO:0009932	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell tip growth	SoyBase	N/A	ISS
GO:0015991	GO-bp	Annotation by Michelle Graham. GO Biological Process: ATP hydrolysis coupled proton transport	SoyBase	N/A	ISS
GO:0016049	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell growth	SoyBase	N/A	ISS
GO:0016051	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate biosynthetic process	SoyBase	N/A	ISS
GO:0030243	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellulose metabolic process	SoyBase	N/A	ISS
GO:0043255	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of carbohydrate biosynthetic process	SoyBase	N/A	ISS
GO:0048193	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport	SoyBase	N/A	ISS
GO:0048765	GO-bp	Annotation by Michelle Graham. GO Biological Process: root hair cell differentiation	SoyBase	N/A	ISS
GO:0051788	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to misfolded protein	SoyBase	N/A	ISS
GO:0080129	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasome core complex assembly	SoyBase	N/A	ISS
GO:0000221	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar proton-transporting V-type ATPase, V1 domain	SoyBase	N/A	ISS
GO:0000325	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type vacuole	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0046961	GO-mf	Annotation by Michelle Graham. GO Molecular Function: proton-transporting ATPase activity, rotational mechanism	SoyBase	N/A	ISS
KOG2909	KOG	Vacuolar H+-ATPase V1 sector, subunit C	JGI		ISS
PTHR10137	Panther	VACUOLAR ATP SYNTHASE SUBUNIT C	JGI		ISS
PF03223	PFAM	V-ATPase subunit C	JGI		ISS
UniRef100_G7KW90	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: V-type proton ATPase subunit C n=1 Tax=Medicago truncatula RepID=G7KW90_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233BD3E	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233BD3E related cluster n=1 Tax=unknown RepID=UPI000233BD3E	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma16g26220

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma16g26220 not represented in the dataset	Glyma16g26220 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma16g26220

Paralog	Evidence	Comments
Glyma02g07260	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma16g26220 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g146600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g26220

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma16g26220

Limit To All Plant Sequences

>Glyma16g26220.2   sequence type=transcript   gene model=Glyma16g26220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTAAAAATTCTTCCTACTTCTCCGTGTTTATTGCTGTCTGTAGTTTGTTTTCATTTTCATCTCTTTTCTTTTCTCCTCCAGACACAAATCAGCAAAAACACGATCCATTCCCAATTTCCATCACACACAGACAAACACTCTCTACATTTTCATTTCCCCGCGTGATCGTTCAGATTCACAGGCCTTATGGCGACGAGATATTGGGTAGTGTCTCTCCCCGTTCAAAATTCCGCATCCACTCTCTGGAACAAATTGCAGGAACAAATCTCCAAACACTCCTTCGACACTCCTCTTTACAGATTCAATATCCCCAATCTCCGGGTCGGAACCCTAGACTCCCTCCTCTCCCTCAGCGACGATCTCGTCAAGTCGAACAGTTTCGTGGAGGGAGTGTCGCACAAGATAAGGCGGCAGATTGAGGAGCTGGAGAGAGTGTCGGGCGTGATGAGCAGTGGTTTGACGGTGGATGGAGTCCCCGTTGATTCCTACTTGACGCGGTTTGTTTGGGATGAAGCGAGGTACCCGACTATGTCGCCATTGAAGGAGATTATCGATGGGATTCACGGTCAGGTGGCAAAGATTGAGGATGATCTCAAGGTTCGTGTTTCCGAGTATAACAATATCCGCAGTCAGCTTAATGCCATCAACCGAAAGCAAACTGGAAGCTTAGCTGTCCGTGATCTTTCCGACTTGGTAAAACCTGAGGATATTATAACTTCAGAAAATTTAACTACCCTTCTGGCAATTGTTCCCAAGTATTCACAGAAGGATTGGCTCTCTAGTTATGAAATCTTGACAAACTATGTGGTTCCCAGGTCTTCCAAGAAGTTGTATGAGGATAACGAATATGCTCTTTATACTGTAACACTCTTCAGTCGTGTTGCAGACAATTTTAGAACTAGTGCACGGGAAGAAGGGTTCCAAATTCGTGATTTCGAATACAGTCCCGAATCACACGACAGCAGGAAGCAAGAGTTAGAGAAATTGGTGGAAGATCAGGAAAGTTTGAGGGGTTCTCTATTGCAGTGGTGTTATACAAGTTATGGAGAGGTTTTCAGCTCCTGGATGCACTTTTGTGCAGTGCGTGTATTTACCGAGAGCATTCTGAGATATGGTCTTCCACCATCTTTCTTGGCATGTGTTTTAGCTCCATCAGTCAAAGCAGAGAAGAAAGTACGTTCTATCCTTGAAGGGTTGAGCGATAGCTCAAACAGTGCTTACTGGAAGACTGAGGACGAAGGAGTTGGGATGGCTGGCCTAGCAGGTGATGCTGATGCCCACCCTTATGTCTCCTTCACTATCAATCTTGTTTGAGTGCAGCACCCAGAAACAAGCCCTGTCTCGTTTCAGGGTCAGCGAAAGATTCCTTGTACATAAGGGTCATGTTCAATTCTTTTATATATATATATATATATATATATATATATAATTTGAGCGTATTGAAGTTTCCAGAAGGATAAGGATCTGGTGAATTTAAGTGTAGTTTTGTGGTATCAAGTTTTGATCATTAGCAACTTGTATGTTGAGTTGTCTCATTATGTTCGATCGTATGTGATTGTGCGACTCGAGGAGTTAGAATCTTTGTATTTTCCTGTTAAATATCTACAATATATCATATAATATTTTAATTGTCTTGAATTTTTTAAAATTACATTTTGAGTAACTTAATACTTATTCGTCTGCATATAGATTAAATTG

Coding sequences of Glyma16g26220

Limit To All Plant Sequences

>Glyma16g26220.1   sequence type=CDS   gene model=Glyma16g26220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGACGAGATATTGGGTAGTGTCTCTCCCCGTTCAAAATTCCGCATCCACTCTCTGGAACAAATTGCAGGAACAAATCTCCAAACACTCCTTCGACACTCCTCTTTACAGATTCAATATCCCCAATCTCCGGGTCGGAACCCTAGACTCCCTCCTCTCCCTCAGCGACGATCTCGTCAAGTCGAACAGTTTCGTGGAGGGAGTGTCGCACAAGATAAGGCGGCAGATTGAGGAGCTGGAGAGAGTGTCGGGCGTGATGAGCAGTGGTTTGACGGTGGATGGAGTCCCCGTTGATTCCTACTTGACGCGGTTTGTTTGGGATGAAGCGAGGTACCCGACTATGTCGCCATTGAAGGAGATTATCGATGGGATTCACGGTCAGGTGGCAAAGATTGAGGATGATCTCAAGGTTCGTGTTTCCGAGTATAACAATATCCGCAGTCAGCTTAATGCCATCAACCGAAAGCAAACTGGAAGCTTAGCTGTCCGTGATCTTTCCGACTTGGTAAAACCTGAGGATATTATAACTTCAGAAAATTTAACTACCCTTCTGGCAATTGTTCCCAAGTATTCACAGAAGGATTGGCTCTCTAGTTATGAAATCTTGACAAACTATGTGGTTCCCAGGTCTTCCAAGAAGTTGTATGAGGATAACGAATATGCTCTTTATACTGTAACACTCTTCAGTCGTGTTGCAGACAATTTTAGAACTAGTGCACGGGAAGAAGGGTTCCAAATTCGTGATTTCGAATACAGTCCCGAATCACACGACAGCAGGAAGCAAGAGTTAGAGAAATTGGTGGAAGATCAGGAAAGTTTGAGGGGTTCTCTATTGCAGTGGTGTTATACAAGTTATGGAGAGGTTTTCAGCTCCTGGATGCACTTTTGTGCAGTGCGTGTATTTACCGAGAGCATTCTGAGATATGGTCTTCCACCATCTTTCTTGGCATGTGTTTTAGCTCCATCAGTCAAAGCAGAGAAGAAAGTACGTTCTATCCTTGAAGGGTTGAGCGATAGCTCAAACAGGTGA

>Glyma16g26220.2   sequence type=CDS   gene model=Glyma16g26220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGACGAGATATTGGGTAGTGTCTCTCCCCGTTCAAAATTCCGCATCCACTCTCTGGAACAAATTGCAGGAACAAATCTCCAAACACTCCTTCGACACTCCTCTTTACAGATTCAATATCCCCAATCTCCGGGTCGGAACCCTAGACTCCCTCCTCTCCCTCAGCGACGATCTCGTCAAGTCGAACAGTTTCGTGGAGGGAGTGTCGCACAAGATAAGGCGGCAGATTGAGGAGCTGGAGAGAGTGTCGGGCGTGATGAGCAGTGGTTTGACGGTGGATGGAGTCCCCGTTGATTCCTACTTGACGCGGTTTGTTTGGGATGAAGCGAGGTACCCGACTATGTCGCCATTGAAGGAGATTATCGATGGGATTCACGGTCAGGTGGCAAAGATTGAGGATGATCTCAAGGTTCGTGTTTCCGAGTATAACAATATCCGCAGTCAGCTTAATGCCATCAACCGAAAGCAAACTGGAAGCTTAGCTGTCCGTGATCTTTCCGACTTGGTAAAACCTGAGGATATTATAACTTCAGAAAATTTAACTACCCTTCTGGCAATTGTTCCCAAGTATTCACAGAAGGATTGGCTCTCTAGTTATGAAATCTTGACAAACTATGTGGTTCCCAGGTCTTCCAAGAAGTTGTATGAGGATAACGAATATGCTCTTTATACTGTAACACTCTTCAGTCGTGTTGCAGACAATTTTAGAACTAGTGCACGGGAAGAAGGGTTCCAAATTCGTGATTTCGAATACAGTCCCGAATCACACGACAGCAGGAAGCAAGAGTTAGAGAAATTGGTGGAAGATCAGGAAAGTTTGAGGGGTTCTCTATTGCAGTGGTGTTATACAAGTTATGGAGAGGTTTTCAGCTCCTGGATGCACTTTTGTGCAGTGCGTGTATTTACCGAGAGCATTCTGAGATATGGTCTTCCACCATCTTTCTTGGCATGTGTTTTAGCTCCATCAGTCAAAGCAGAGAAGAAAGTACGTTCTATCCTTGAAGGGTTGAGCGATAGCTCAAACAGTGCTTACTGGAAGACTGAGGACGAAGGAGTTGGGATGGCTGGCCTAGCAGGTGATGCTGATGCCCACCCTTATGTCTCCTTCACTATCAATCTTGTTTGA

Predicted protein sequences of Glyma16g26220

Limit To All Plant Sequences

>Glyma16g26220.1   sequence type=predicted peptide   gene model=Glyma16g26220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATRYWVVSLPVQNSASTLWNKLQEQISKHSFDTPLYRFNIPNLRVGTLDSLLSLSDDLVKSNSFVEGVSHKIRRQIEELERVSGVMSSGLTVDGVPVDSYLTRFVWDEARYPTMSPLKEIIDGIHGQVAKIEDDLKVRVSEYNNIRSQLNAINRKQTGSLAVRDLSDLVKPEDIITSENLTTLLAIVPKYSQKDWLSSYEILTNYVVPRSSKKLYEDNEYALYTVTLFSRVADNFRTSAREEGFQIRDFEYSPESHDSRKQELEKLVEDQESLRGSLLQWCYTSYGEVFSSWMHFCAVRVFTESILRYGLPPSFLACVLAPSVKAEKKVRSILEGLSDSSNR*

>Glyma16g26220.2   sequence type=predicted peptide   gene model=Glyma16g26220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATRYWVVSLPVQNSASTLWNKLQEQISKHSFDTPLYRFNIPNLRVGTLDSLLSLSDDLVKSNSFVEGVSHKIRRQIEELERVSGVMSSGLTVDGVPVDSYLTRFVWDEARYPTMSPLKEIIDGIHGQVAKIEDDLKVRVSEYNNIRSQLNAINRKQTGSLAVRDLSDLVKPEDIITSENLTTLLAIVPKYSQKDWLSSYEILTNYVVPRSSKKLYEDNEYALYTVTLFSRVADNFRTSAREEGFQIRDFEYSPESHDSRKQELEKLVEDQESLRGSLLQWCYTSYGEVFSSWMHFCAVRVFTESILRYGLPPSFLACVLAPSVKAEKKVRSILEGLSDSSNSAYWKTEDEGVGMAGLAGDADAHPYVSFTINLV*

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