SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G26810 | AT | Annotation by Michelle Graham. TAIR10: auxin signaling F-box 2 | chr3:9868342-9870464 FORWARD LENGTH=575 | SoyBase | E_val: 0 | ISS |
| GO:0002237 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to molecule of bacterial origin | SoyBase | N/A | ISS |
| GO:0007165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: signal transduction | SoyBase | N/A | ISS |
| GO:0010103 | GO-bp | Annotation by Michelle Graham. GO Biological Process: stomatal complex morphogenesis | SoyBase | N/A | ISS |
| GO:0010152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen maturation | SoyBase | N/A | ISS |
| GO:0048443 | GO-bp | Annotation by Michelle Graham. GO Biological Process: stamen development | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005774 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane | SoyBase | N/A | ISS |
| GO:0004842 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity | SoyBase | N/A | ISS |
| GO:0010011 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: auxin binding | SoyBase | N/A | ISS |
| KOG1947 | KOG | Leucine rich repeat proteins, some proteins contain F-box | JGI | ISS | |
| PTHR23125 | Panther | F-BOX/LEUCINE RICH REPEAT PROTEIN | JGI | ISS | |
| PTHR23125:SF17 | Panther | GRR1-RELATED, ARATH | JGI | ISS | |
| UniRef100_G7KW81 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein AUXIN SIGNALING F-BOX n=1 Tax=Medicago truncatula RepID=G7KW81_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MNN2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MNN2_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma16g26200 not represented in the dataset |
Glyma16g26200 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g07240 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g146400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g26200.1 sequence type=CDS gene model=Glyma16g26200 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAATTGTTTTCCTGATGAGGTGATTGGGCACATATTTGGTTGCGTGACTTCACAAAGGGACAGGAATGCCGTGTCTCTGGTGTGCAAGAACTGGCACAGGTTAGAGAGATGTTGTAGGAAGAGTTTGTTCATAGGGAACTGCTACACCATAAGTCCTGAGAGAGTGATAGAGAGGTTCCCTGAGCTAAGGTCCTTAACTTTGAAGGGAAAGCCTCATTTTCCATATTTTAGTTTGGTTCCTAGTGGTTGGGGTGGTTTTGTGGCTCCTTGGATTGAAGCATTGGCCAGGAGCAGGGTTGATTTAGAGGAGCTGAGGTTGAAGAGGATGGTGGTCTCAGATGAGAGCCTGGAGCTTCTTTCCCGTTCTTTCGTGAATTTCAAGTCTTTGGTTCTTGTTCGTTGTGAAGGGTTCACCACCGAAGGACTTGCAGCTATAGCTGCAAATTGTAGGTTCCTTAAGGATCTGGATTTGCATGAAAATGTAGTTACCGACCTCAAAGGCCAGTGGCTAAGCTGTTTTCCTGATTGCTGTACATCTCTTGTCTCTCTTAATTTTGCTTGCCTTAAAGGGCAGATTAATGCGGGGGATCTCGAGAGACTTGTGGCCAGATCTCCTAACCTTAAAAGCTTAAGGTTAAACCATACCGTGCCCCTCAGTGCACTCCAAAGGATATTGATGCAAGCACCTCAGCTAGTGGACTTGGGTATTGGGTCATTTGTCTTTGATCCACGTTCTGAGGTCTACAATAATATGAAGAATGCCATCTTAAAGTGCATGTCAATAACCAGTTTGTCAGGATTTTTCTGGGTTTATCCTCACTGCCTTAGTGCTTTATATCCTGTTTGCATGAACTTAACAACCTTGAACCTGAGGTTTGCAGCAGGAATTCAGAACACAGAGCTAATAAAACTAATATGCTGCTGTGGGAAACTTCAGCGTTTATCGATAATGGATTGCATTGGAGACAATGGACTAGGTGTTGTGGCTGCCACATGTAAAGATTTGCAAGAACTAAGGGTTTTTCCGGTTGTTCGTGTTGGTGGAAATGGCCCTACAAGAGTCACAGAGAAAGGACTTGTTGCAATCTCTATGGGTTGCCCTGAGCTTCACTCATTGCTCTACTTCTGCCAGCAGATGACAAACGCCGCCCTCATAACTGTGGCTAAAAACTGCCCAAATTTCATCCGCTTTAGGTTGTGTATCCTTGATCCAACAAAACCTGACCCTGATACAATGCAGCCACTCAACGAAGGTTTTGGCGCAATTGTGCAGTCTTGCAAGCAGCTTCGGCGGTTGTCACTCTCTGGCCAGCTGACTGATCAAGTTTTCCTTTACATTGGGATGTATGCTGAGCAGCTTGAGATGCTGTCTGTAGCATTTGCAGGAGAAAGTGACAAGGCTATGCTCTATGTGTTGAATGGATGCAAGAAAATTCACAAGCTTGCGATAAGAGGTAGCCCTTTTGGTGACTCAGCGCTTCTGATGGATGTAGGGAAGTATGAAACAATGCAATTCCTTTGGATGACGTCCTGCAATGTCACCGTTGGAGCCTGCAAGGCACTAGCTGAGAAGATGCCAAGACTAAATGTGGAGATATTTAACGAAAACAAAAAGGTAGATCGTGATGTGGATGATGGCCAGAAAGTAGAGAAGATGTACTTATATAGAACACTGGCTGGGAGAAGGAAAGATGCACCAGAACTTGTATGGACTCTGTAG
>Glyma16g26200.1 sequence type=predicted peptide gene model=Glyma16g26200 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNCFPDEVIGHIFGCVTSQRDRNAVSLVCKNWHRLERCCRKSLFIGNCYTISPERVIERFPELRSLTLKGKPHFPYFSLVPSGWGGFVAPWIEALARSRVDLEELRLKRMVVSDESLELLSRSFVNFKSLVLVRCEGFTTEGLAAIAANCRFLKDLDLHENVVTDLKGQWLSCFPDCCTSLVSLNFACLKGQINAGDLERLVARSPNLKSLRLNHTVPLSALQRILMQAPQLVDLGIGSFVFDPRSEVYNNMKNAILKCMSITSLSGFFWVYPHCLSALYPVCMNLTTLNLRFAAGIQNTELIKLICCCGKLQRLSIMDCIGDNGLGVVAATCKDLQELRVFPVVRVGGNGPTRVTEKGLVAISMGCPELHSLLYFCQQMTNAALITVAKNCPNFIRFRLCILDPTKPDPDTMQPLNEGFGAIVQSCKQLRRLSLSGQLTDQVFLYIGMYAEQLEMLSVAFAGESDKAMLYVLNGCKKIHKLAIRGSPFGDSALLMDVGKYETMQFLWMTSCNVTVGACKALAEKMPRLNVEIFNENKKVDRDVDDGQKVEKMYLYRTLAGRRKDAPELVWTL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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