SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G48160 | AT | Annotation by Michelle Graham. TAIR10: signal recognition particle 19 kDa protein, putative / SRP19, putative | chr1:17786779-17788286 REVERSE LENGTH=145 | SoyBase | E_val: 2.00E-55 | ISS |
| GO:0006605 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting | SoyBase | N/A | ISS |
| GO:0006614 | GO-bp | Annotation by Michelle Graham. GO Biological Process: SRP-dependent cotranslational protein targeting to membrane | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005786 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: signal recognition particle, endoplasmic reticulum targeting | SoyBase | N/A | ISS |
| GO:0048500 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: signal recognition particle | SoyBase | N/A | ISS |
| GO:0008312 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 7S RNA binding | SoyBase | N/A | ISS |
| KOG3198 | KOG | Signal recognition particle, subunit Srp19 | JGI | ISS | |
| PTHR17453 | Panther | SIGNAL RECOGNITION PARTICLE 19 KD PROTEIN | JGI | ISS | |
| PF01922 | PFAM | SRP19 protein | JGI | ISS | |
| UniRef100_B9SS07 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Signal recognition particle 19 kD protein, putative n=1 Tax=Ricinus communis RepID=B9SS07_RICCO | SoyBase | E_val: 6.00E-67 | ISS |
| UniRef100_C6TCJ7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TCJ7_SOYBN | SoyBase | E_val: 5.00E-97 | ISS |
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Glyma16g26150 not represented in the dataset |
Glyma16g26150 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g07200 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g146000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g26150.1 sequence type=CDS gene model=Glyma16g26150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATACTTCCGAATTGCCCAACCTAAAGAAATGGATTGTGATGTATCCCGTTTACATAAACTCCAAGAAAACGATGGCCGAAGGAAGGCGCATTGGCCTCGCCAAAGCCTGCGAAAATCCTACTTGCGCCGAAATCGGTGATTGCTGCAGCTATCTGAAGCTCCCTTTTGCAATTGAGATAGACAAGGCGTACCCTCGTGATTTCATGCAGAGAGGGCGCGTGAGGGTGTTGCTTAAGAAGGAGGATGGGACTCTCTTTAATTCCGCCATCTCATCAAGAAAGCAACTAATGGTAAAGGTTGCAGAGATGGTACCTAGGCATCATGGAAGGACCAAGAAGCAGGATCCTGCATCAACATCAACTGCTGGACCTTCCACCAAATCTGGGAAGGGTGGAAAAAAGAGGAGATAA
>Glyma16g26150.1 sequence type=predicted peptide gene model=Glyma16g26150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDTSELPNLKKWIVMYPVYINSKKTMAEGRRIGLAKACENPTCAEIGDCCSYLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLFNSAISSRKQLMVKVAEMVPRHHGRTKKQDPASTSTAGPSTKSGKGGKKRR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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