SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G12090 | AT | Annotation by Michelle Graham. TAIR10: tetraspanin6 | chr3:3852326-3853714 REVERSE LENGTH=282 | SoyBase | E_val: 3.00E-127 | ISS |
| GO:0000041 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transition metal ion transport | SoyBase | N/A | ISS |
| GO:0007568 | GO-bp | Annotation by Michelle Graham. GO Biological Process: aging | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG3882 | KOG | Tetraspanin family integral membrane protein | JGI | ISS | |
| PTHR19282 | Panther | TETRASPANIN | JGI | ISS | |
| PTHR19282:SF137 | Panther | JGI | ISS | ||
| PF00335 | PFAM | Tetraspanin family | JGI | ISS | |
| UniRef100_Q9C7C1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: AT3g12090/T21B14_110 n=2 Tax=Arabidopsis thaliana RepID=Q9C7C1_ARATH | SoyBase | E_val: 1.00E-124 | ISS |
| UniRef100_UPI0001D62D71 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0001D62D71 related cluster n=1 Tax=unknown RepID=UPI0001D62D71 | SoyBase | E_val: 0 | ISS |
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Glyma16g26080 not represented in the dataset |
Glyma16g26080 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g07090 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g145400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g26080.1 sequence type=CDS gene model=Glyma16g26080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAACGTTTCAGCAACACAGTGATCGGATTCTTGAACTTTTTCACGCTCTTGGCATCAATACCCATCATTGGTGCGGGTCTATGGATGGCAAGGAGCACCCTAACATGTGAAAATTTCTTCCAAACCCCACTTTTGGTCATAGGCTTTGTTGTGCTTGTGATTTCGCTAACGGGTTTAATAGGGGCATGCTTTCATGTGGCATGGGCATTGTGGGTGTACTTGGTGATCATGGTGTTCATTATAGCTACCCTCTTAGGGTTTACCATATTTGGCTTTGTTGTGACTGAACAGGGTGGGGGAGTGGAAGTGCCTGGTAGGGCTTACAAGGAGTATCGTCTCGAGCGTTATTCGCCATGGCTGAGGAATAGGATTCAGGATCCTCAGTATTGGAGCACCATAAGAAGCTGCATTTTGGGGTCTAACACTTGTGCAAAGCTTGCCTTTTGGACCCCTCTTGATTACGTGCAGAGGGACATGTCTCCCATTCAGTCAGGATGTTGTAAGCCACCAACAGCGTGCATGTACAACGAGGAAACAGTGGTAGTGACCCCAGACTCGGATTGCTACCGTTGGAATAACGCCCCAACTCTGCTTTGCTACGACTGCAACTCTTGCAAGGCTGGTGTGCTCGAAAACATTAGAAGGGACTGGCACAACATCTCTGTTCTTAACGTTGTCGTGCTTGTGTTCCTCATAGGCATATATTCCATTGCCTGTTGCGCTTTCAGGAACGCAAGAAGAGCTCAAACTGATTACCCTCATGGCGAAAACCGCATGACCAAAGTTAAACCTAGATGGGATTATTATTGTTGGAGATGGTGGTATAACAAGAAGGAGGAGCTTTTTTGA
>Glyma16g26080.1 sequence type=predicted peptide gene model=Glyma16g26080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQRFSNTVIGFLNFFTLLASIPIIGAGLWMARSTLTCENFFQTPLLVIGFVVLVISLTGLIGACFHVAWALWVYLVIMVFIIATLLGFTIFGFVVTEQGGGVEVPGRAYKEYRLERYSPWLRNRIQDPQYWSTIRSCILGSNTCAKLAFWTPLDYVQRDMSPIQSGCCKPPTACMYNEETVVVTPDSDCYRWNNAPTLLCYDCNSCKAGVLENIRRDWHNISVLNVVVLVFLIGIYSIACCAFRNARRAQTDYPHGENRMTKVKPRWDYYCWRWWYNKKEELF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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