Glyma16g26070 - SoyBase

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Report for Sequence Feature Glyma16g26070

Feature Type:	gene_model
Chromosome:	Gm16
Start:	30236691
stop:	30240706
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g26070

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G07990	AT	Annotation by Michelle Graham. TAIR10: serine carboxypeptidase-like 27 \| chr3:2552544-2554644 FORWARD LENGTH=459	SoyBase	E_val: 0	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0007020	GO-bp	Annotation by Michelle Graham. GO Biological Process: microtubule nucleation	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0004185	GO-mf	Annotation by Michelle Graham. GO Molecular Function: serine-type carboxypeptidase activity	SoyBase	N/A	ISS
KOG1282	KOG	Serine carboxypeptidases (lysosomal cathepsin A)	JGI		ISS
PTHR11802	Panther	SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE	JGI		ISS
PTHR11802:SF8	Panther	SERINE CARBOXYPEPTIDASE II (CARBOXYPEPTIDASE D) (PLANTS)	JGI		ISS
PF00450	PFAM	Serine carboxypeptidase	JGI		ISS
UniRef100_G7I9K3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Serine carboxypeptidase-like protein n=1 Tax=Medicago truncatula RepID=G7I9K3_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1MNL7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MNL7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma16g26070

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma16g26070 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g145300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g26070

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma16g26070

Limit To All Plant Sequences

>Glyma16g26070.2   sequence type=transcript   gene model=Glyma16g26070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTCCAAGGTAGGAAACCCATAAATTTATTCTAGTAATACATTTCTGGGTTTTGTTTGCCTTGTGTGTATCTTTCTATTGACGAGAATAATGGAATGTTCCCAATTCTCTGTTTTTTTGCTTTTGTCCATTTTTGTGGGAATTTGTTTAGCTTCTACTGAGGAACAGGAAAGGGACAGGATTGCCAAGCTGCCAGGACAACCAGAAAATGTGCTATTTGCACACTACTCAGGCTATGTGACTGTGAATGAAGAAGCTGGGAGAGCATTGTTCTATTGGCTGGTTGAGACACCAGCTAGTATTGAACCAAGTTCAAGACCACTAGTGTTGTGGCTCAATGGTGGACCTGGATGCTCCTCTATTGGTTATGGAGCAGCTGAAGAAATTGGCCCTTTTAGAATTAATTCTGATGGGAATTCACTTTACTCCAATCCTTATGCTTGGAACAACTTGGCAAATATACTCTTCCTTGATTCTCCTGCTGGTGTTGGCTTTTCATATTCTAACACAACATCTGATCTGTATACAGCAGGTGACCAAAGGACAGCTGAAGATGCATATACATTCCTTGTTAATTGGTTTGAAAGATTTCCTCAGTATAAGCATAGAGATTTCTACATTGCTGGAGAAAGTTATGCAGTTGTCTCAACTTGTTTACCGGAGAAATAAAGGAATCGAGAATCCAGTTATAAATTTCAAGGGTTTTATGGTTGGAAATGCAGTCATTGATGATTTCCATGATTATATTGGAACATTTGAGTACTGGTGGGTCAATGGTTTGATTTCAGATTCCACATATAAGAAGCTGGGAATTGCCTGTGACTTTTATTCTTCTGAGCATCCACCAGAGAATTGTGTGGAAGCTCTCGAACTTGCAACTTTGGAGCAGGGAAACATTGATCCATATAGCATTTATACACCAGTATGCAATGATATAGCAGCAATCAAACGCCGTTTGGGGGGTCGCTATCCATGGTTGTCTCGAGCATATGATCCCTGTACTGAGAGGTACTCTACCTTGTATTTCAATCGTCCAGAAGTTCAGAAGGCACTTCATGCCAATGTAACTGGGATTCCTTATTCATGGGCAGGATGCAATGATGTTATTGTGGAAAATTGGGGTGATTCTCCGCTATCTATGCTTCCAATATATCAAGAACTTATTGAAGGTGGTATCAGAATATGGGTATTCAGTGGAGACACTGATTCAGTAGTTCCTGTAACCGCGTCTCGGTATTCAATCCGTGCCTTGAACCTATCTACCATCATCAATTGGTACGCTTGGTATGATAATGACGAGGTTGGTGGCTGGAGTCAAGTTTATGAGGGGCTTACATTGGTTACAGTAAGAGGGGCAGGGCACGAGGTTCCACTTCATAAACCCCGCCAAGGTTTTATCCTTTTCAAGACATTCTTGGAGGACAAGAACATGCCATTGCCAATTGATAGAAGCCTTAGTGGCCCAACTGATAAATCACTGAACAAGAACATTCGGTTGGCTAGGCCCATACGCAAGATCACTATGCCATCATCGACGCAGGGCTTTACTTATTAGATTTCTATCTTTGTTGTTCTACAATAAAACACCCCTTCTACAATAAAACACCCCTTTCTGCACCGATTTAGAGGGGCTATGTATTTTGTTATATAAGTGATCTTAATAATTTAAGAGGGGTGAATTAAATTAAAAAATTTCTCGTTTAATTGACTTCTAAATCCCCTTTTAAATCTAT

Coding sequences of Glyma16g26070

Limit To All Plant Sequences

>Glyma16g26070.1   sequence type=CDS   gene model=Glyma16g26070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATGTTCCCAATTCTCTGTTTTTTTGCTTTTGTCCATTTTTGTGGGAATTTGTTTAGCTTCTACTGAGGAACAGGAAAGGGACAGGATTGCCAAGCTGCCAGGACAACCAGAAAATGTGCTATTTGCACACTACTCAGGCTATGTGACTGTGAATGAAGAAGCTGGGAGAGCATTGTTCTATTGGCTGGTTGAGACACCAGCTAGTATTGAACCAAGTTCAAGACCACTAGTGTTGTGGCTCAATGGTGGACCTGGATGCTCCTCTATTGGTTATGGAGCAGCTGAAGAAATTGGCCCTTTTAGAATTAATTCTGATGGGAATTCACTTTACTCCAATCCTTATGCTTGGAACAACTTGGCAAATATACTCTTCCTTGATTCTCCTGCTGGTGTTGGCTTTTCATATTCTAACACAACATCTGATCTGTATACAGCAGGTGACCAAAGGACAGCTGAAGATGCATATACATTCCTTGTTAATTGGTTTGAAAGATTTCCTCAGTATAAGCATAGAGATTTCTACATTGCTGGAGAAAGTTATGCAGGTCACTATGTTCCTCAGTTGTCTCAACTTGTTTACCGGAGAAATAAAGGAATCGAGAATCCAGTTATAAATTTCAAGGGTTTTATGGTTGGAAATGCAGTCATTGATGATTTCCATGATTATATTGGAACATTTGAGTACTGGTGGGTCAATGGTTTGATTTCAGATTCCACATATAAGAAGCTGGGAATTGCCTGTGACTTTTATTCTTCTGAGCATCCACCAGAGAATTGTGTGGAAGCTCTCGAACTTGCAACTTTGGAGCAGGGAAACATTGATCCATATAGCATTTATACACCAGTATGCAATGATATAGCAGCAATCAAACGCCGTTTGGGGGGTCGCTATCCATGGTTGTCTCGAGCATATGATCCCTGTACTGAGAGGTACTCTACCTTGTATTTCAATCGTCCAGAAGTTCAGAAGGCACTTCATGCCAATGTAACTGGGATTCCTTATTCATGGGCAGGATGCAATGATGTTATTGTGGAAAATTGGGGTGATTCTCCGCTATCTATGCTTCCAATATATCAAGAACTTATTGAAGGTGGTATCAGAATATGGGTATTCAGTGGAGACACTGATTCAGTAGTTCCTGTAACCGCGTCTCGGTATTCAATCCGTGCCTTGAACCTATCTACCATCATCAATTGGTACGCTTGGTATGATAATGACGAGGTTGGTGGCTGGAGTCAAGTTTATGAGGGGCTTACATTGGTTACAGTAAGAGGGGCAGGGCACGAGGTTCCACTTCATAAACCCCGCCAAGGTTTTATCCTTTTCAAGACATTCTTGGAGGACAAGAACATGCCATTGCCAATTGATAGAAGCCTTAGTGGCCCAACTGATAAATCACTGAACAAGAACATTCGGTTGGCTAGGCCCATACGCAAGATCACTATGCCATCATCGACGCAGGGCTTTACTTATTAG

>Glyma16g26070.2   sequence type=CDS   gene model=Glyma16g26070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGACCTGGATGCTCCTCTATTGGTTATGGAGCAGCTGAAGAAATTGGCCCTTTTAGAATTAATTCTGATGGGAATTCACTTTACTCCAATCCTTATGCTTGGAACAACTTGGCAAATATACTCTTCCTTGATTCTCCTGCTGGTGTTGGCTTTTCATATTCTAACACAACATCTGATCTGTATACAGCAGGTGACCAAAGGACAGCTGAAGATGCATATACATTCCTTGTTAATTGGTTTGAAAGATTTCCTCAGTATAAGCATAGAGATTTCTACATTGCTGGAGAAAGTTATGCAGTTGTCTCAACTTGTTTACCGGAGAAATAAAGGAATCGAGAATCCAGTTATAAATTTCAAGGGTTTTATGGTTGGAAATGCAGTCATTGATGATTTCCATGATTATATTGGAACATTTGAGTACTGGTGGGTCAATGGTTTGATTTCAGATTCCACATATAAGAAGCTGGGAATTGCCTGTGACTTTTATTCTTCTGAGCATCCACCAGAGAATTGTGTGGAAGCTCTCGAACTTGCAACTTTGGAGCAGGGAAACATTGATCCATATAGCATTTATACACCAGTATGCAATGATATAGCAGCAATCAAACGCCGTTTGGGGGGTCGCTATCCATGGTTGTCTCGAGCATATGATCCCTGTACTGAGAGGTACTCTACCTTGTATTTCAATCGTCCAGAAGTTCAGAAGGCACTTCATGCCAATGTAACTGGGATTCCTTATTCATGGGCAGGATGCAATGATGTTATTGTGGAAAATTGGGGTGATTCTCCGCTATCTATGCTTCCAATATATCAAGAACTTATTGAAGGTGGTATCAGAATATGGGTATTCAGTGGAGACACTGATTCAGTAGTTCCTGTAACCGCGTCTCGGTATTCAATCCGTGCCTTGAACCTATCTACCATCATCAATTGGTACGCTTGGTATGATAATGACGAGGTTGGTGGCTGGAGTCAAGTTTATGAGGGGCTTACATTGGTTACAGTAAGAGGGGCAGGGCACGAGGTTCCACTTCATAAACCCCGCCAAGGTTTTATCCTTTTCAAGACATTCTTGGAGGACAAGAACATGCCATTGCCAATTGATAGAAGCCTTAGTGGCCCAACTGATAAATCACTGAACAAGAACATTCGGTTGGCTAGGCCCATACGCAAGATCACTATGCCATCATCGACGCAGGGCTTTACTTATTAG

Predicted protein sequences of Glyma16g26070

Limit To All Plant Sequences

>Glyma16g26070.1   sequence type=predicted peptide   gene model=Glyma16g26070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MECSQFSVFLLLSIFVGICLASTEEQERDRIAKLPGQPENVLFAHYSGYVTVNEEAGRALFYWLVETPASIEPSSRPLVLWLNGGPGCSSIGYGAAEEIGPFRINSDGNSLYSNPYAWNNLANILFLDSPAGVGFSYSNTTSDLYTAGDQRTAEDAYTFLVNWFERFPQYKHRDFYIAGESYAGHYVPQLSQLVYRRNKGIENPVINFKGFMVGNAVIDDFHDYIGTFEYWWVNGLISDSTYKKLGIACDFYSSEHPPENCVEALELATLEQGNIDPYSIYTPVCNDIAAIKRRLGGRYPWLSRAYDPCTERYSTLYFNRPEVQKALHANVTGIPYSWAGCNDVIVENWGDSPLSMLPIYQELIEGGIRIWVFSGDTDSVVPVTASRYSIRALNLSTIINWYAWYDNDEVGGWSQVYEGLTLVTVRGAGHEVPLHKPRQGFILFKTFLEDKNMPLPIDRSLSGPTDKSLNKNIRLARPIRKITMPSSTQGFTY*

>Glyma16g26070.2   sequence type=predicted peptide   gene model=Glyma16g26070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVDLDAPLLVMEQLKKLALLELILMGIHFTPILMLGTTWQIYSSLILLLVLAFHILTQHLICIQQVTKGQLKMHIHSLLIGLKDFLSISIEISTLLEKVMQLSQLVYRRNKGIENPVINFKGFMVGNAVIDDFHDYIGTFEYWWVNGLISDSTYKKLGIACDFYSSEHPPENCVEALELATLEQGNIDPYSIYTPVCNDIAAIKRRLGGRYPWLSRAYDPCTERYSTLYFNRPEVQKALHANVTGIPYSWAGCNDVIVENWGDSPLSMLPIYQELIEGGIRIWVFSGDTDSVVPVTASRYSIRALNLSTIINWYAWYDNDEVGGWSQVYEGLTLVTVRGAGHEVPLHKPRQGFILFKTFLEDKNMPLPIDRSLSGPTDKSLNKNIRLARPIRKITMPSSTQGFTY*

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