SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G50410 | AT | Annotation by Michelle Graham. TAIR10: OBF binding protein 1 | chr3:18709872-18710633 FORWARD LENGTH=253 | SoyBase | E_val: 1.00E-57 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0009733 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus | SoyBase | N/A | ISS |
| GO:0009751 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salicylic acid stimulus | SoyBase | N/A | ISS |
| GO:0042545 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell wall modification | SoyBase | N/A | ISS |
| GO:0045787 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of cell cycle | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| PF02701 | PFAM | Dof domain, zinc finger | JGI | ISS | |
| UniRef100_I1MNL4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MNL4_SOYBN | SoyBase | E_val: 1.00E-171 | ISS |
| UniRef100_Q76KU9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: DNA binding with one finger 5 protein n=1 Tax=Pisum sativum RepID=Q76KU9_PEA | SoyBase | E_val: 4.00E-78 | ISS |
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Glyma16g26030 not represented in the dataset |
Glyma16g26030 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g06970 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g145000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g26030.1 sequence type=CDS gene model=Glyma16g26030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCGTCGTCGAATTCCGGCGAGAGCCGCCGAGCGAGCAAGCCGCATCGATCGGTGGCGGCGCCGCCGGTCGAGCCAGAGAACCTCCCCTGCCCGCGGTGCGACTCCGCCAACACCAAGTTCTGCTACTACAACAACTACAACTACTCCCAGCCGCGCCACTTCTGCAAGTCCTGCCGCCGCTACTGGACCCACGGCGGCACCCTCCGCGACATCCCCGTCGGCGGAGGCAGCCGCAAGAACGCCAAGCGCTCCCGCACCCACCACGCCGCCGCCGCCACATCGTCGTCCTCCTCCACCTCCTCCGCCACGACGTCAGCGCACGAACACCACAACGCGCACACGTTAACCGCATTGGCTCCCGTTACCGCCGCCACGCACTTCGGACATGACGGCGACGTCAAACAGACTAACGGTAACGCTTGCGGGAGCTACACTTCGTTGCTGAACAACACCCAGGGCTCCGGGTTTTTCGCCCTCGGTGGGTTTGGGCTTGGGCTTGGACACGGGTTTGACGACATGGGCTTTGGCATTGGGAGGTCGGGCTGGGCATTCCCCGGAATGGTGGACAATGGCAACATTGGCGGCGCCATTGCGTCTTCTGGAGTCAACACGTGGCAGTTAGAGAGTGGCGAAGGTGGGTTCGTTGGCGGAGATTGCTTCTCTTGGCCTGGGCTTGCGATTTCAACACCGGGAAATGGTCTCAAATGA
>Glyma16g26030.1 sequence type=predicted peptide gene model=Glyma16g26030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPSSNSGESRRASKPHRSVAAPPVEPENLPCPRCDSANTKFCYYNNYNYSQPRHFCKSCRRYWTHGGTLRDIPVGGGSRKNAKRSRTHHAAAATSSSSSTSSATTSAHEHHNAHTLTALAPVTAATHFGHDGDVKQTNGNACGSYTSLLNNTQGSGFFALGGFGLGLGHGFDDMGFGIGRSGWAFPGMVDNGNIGGAIASSGVNTWQLESGEGGFVGGDCFSWPGLAISTPGNGLK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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