Glyma16g26010 - SoyBase

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Report for Sequence Feature Glyma16g26010

Feature Type:	gene_model
Chromosome:	Gm16
Start:	30153191
stop:	30157404
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g26010

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G23520	AT	Annotation by Michelle Graham. TAIR10: Pyridoxal phosphate (PLP)-dependent transferases superfamily protein \| chr2:10014256-10016943 REVERSE LENGTH=895	SoyBase	E_val: 0	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0030170	GO-mf	Annotation by Michelle Graham. GO Molecular Function: pyridoxal phosphate binding	SoyBase	N/A	ISS
KOG2142	KOG	Molybdenum cofactor sulfurase	JGI		ISS
PTHR14237	Panther	MOLYBDOPTERIN COFACTOR SULFURASE (MOSC)	JGI		ISS
PTHR14237:SF3	Panther	gb def: hypothetical protein [arabidopsis thaliana]	JGI		ISS
PF00266	PFAM	Aminotransferase class-V	JGI		ISS
UniRef100_B9S8P3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Molybdopterin cofactor sulfurase, putative n=1 Tax=Ricinus communis RepID=B9S8P3_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233BBDC	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233BBDC related cluster n=1 Tax=unknown RepID=UPI000233BBDC	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma16g26010

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma16g26010 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g144800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g26010

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma16g26010

Limit To All Plant Sequences

>Glyma16g26010.2   sequence type=CDS   gene model=Glyma16g26010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCATCTCTCACTATGGAAGCCCATTTCACACTGTGCTGCACTGATCATGGACAAGAAGAGCAGGAGGAAAGACGAATCCAATGTTGACATGAGGAGAAACCCATCAATGCTTCGGAAGCTGCAAGAGAACAAGCTCAGGGAAGCCCTTGAGGAAGCTTCTGAAGATGGCTCACTCTCCAAATCTCAAGACATAGACCAGCCTGACTCTGCTGCCAACCAGGATGATGATGGCCTTGGGAGATCCCGATCGCTCGCCCGGCTGCACGCCCAGCGCGAGTTCCTTCGCGCCACTGCTCTTGCAGCCGAGCGAATCTTCGAGTCCCAGGAGGAAATTCCCAGCCTCCGGGAAGCATTTGCCAAGTTCCTAACTATGTACCCAAAGTACCAGTCCTCTGAGAAGGTTGATCAGTTGAGGTCTGATGAATACTCACATTTGTCACCCAAGGTATGCCTTGATTACTGTGGTTTTGGACTCTTCTCTTTTGTTCAGACAATTCACTATTGGGAGTCTTCTACGTTTAGCCTGTCTGAGATAACTGCTAATTTGAGTAACCATGCACTTTATGGCGGTGCTGAGAGAGGAACTGTTGAGCATGATATAAAGACTAGGATCATGGACTATTTGAATATTCCTGAGAATGAATATGGCCTTGTTTTTACTGTCAGCAGAGGATCAGCTTTCAAATTGCTGGCTGATTCCTACCCTTTCCATACGAACAAAAAGTTGCTGACCATGTTCGATCACGAGAGCCAGTCCATTGCTTGGATGGCTCAGAGTGCCAGGGAGAAAGGTGCTAAAGTGCATAGTGCATGGTTTAAATGGCCAACCCTCAAACTCTGCTCCACTGATTTGAGGAAACAGATTTCCAACAAGAAGAAGAGGAAGAAGGATTCAGCCACCGGTCTTTTTGTGTTCCCAGTTCAGTCTAGAGTAACCGGGGCTAAGTATTCATACCAGTGGATGGCCTTGGCCCAGCAGAACAACTGGCATGTCTTACTGGATGCTGGATCATTGGGCCCCAAGGACATGGATTCTCTTGGCTTGTCCCTATTTCGGCCAGATTTTATAGTTACATCATTTTACAGGGTTTTTGGATATGATCCCACAGGTTTTGGTTGTCTTCTGATCAAGAAATCAGTGATGCAAAGCCTTCAAAATCAGTCTGGTTGTACTGGGTCTGGAATGGTGAAGATTACCCCGGAGTTTCCAATGTATTTGAGTGATTCTGTTGATGGTTTGGATAAATTGGTTGGGATTGAAGACGATGATGAAATCACTGGGATGGGTGAAAAGACTTCTGAAACTCGTCAGGGAACACAGTTGCCTGCCTTTTCTGGTGCATTCACATCTGCACAGGTCAGAGATGTGTTTGAGACCGAAATGGATCAAGACAGCTCTGAAAGAGATGGAACTAGCACCATATTTGAGGAGACTGAAAGCATATCTGTTGGTGAGGTGATAAAGAGTCCCGTCTTCAGTGAGGATGAGTCATCGGACAACTCATTTTGGATTGATTTGGGTCAAAGTCCTTTGGGATCTGACAGTGCTGGTCAATCCAATAAACATAAGATAGCTTCTCCCCTACCACCTTTCTGGTTCAATGGGAGGAGGAACCAGAAGCAACATTCTCCAAAACCAACTTCCAAGATGTATGGAAGCCCAATGTACAATGACAGAGAGGTAAACCTAGGTGCTCACGAGGACCGCCACGTGCTGTCATTTGATGCTGCTGTCCTGATGTCACAGGAACTAGACCGGGTCAAAGAGGTACCTGAAGAAGAGCATGTCGAGGAAGTTGATCATTATTCAAGAAATGGTAATGGGTCAGATCATCTGCACGTCAATGAGATCCTGGAAGAACCTGGAACCAGTGGAGTAGTCAATAATGGATCTTGGCTCGATTCAACTTCTCTTGCCAGGCATCAAAGCTTGGAGAATGGCTCTACTTCTGAAATATGTCCTGATGTCAAAGAGAGTGCCATAAGAAGGGAAACTGAAGGTGAATTCAGGTTGTTGGGTAGGAGAGAAGGGAATCGTTATGGTGGTGGTAGGTTTTTCGGTTTGGAAGAGAATGAAGCCAACAGCAGGGGAAGAAGAGTGTCATTTAGCATGGAAGATAATCATAAAGAGTACCTAAGCCAGACCCTAGAGCCAGGGGACATGTCTGCAACTAGCTTTGATGATGAAGAGGTGACAAGTGATGGAGAATATGGTGATGGACAGGACTGGGGCAGGAAGGAACCAGAGATAATATGTCGACATATCGATCATGTCAATATGCTTGGTCTCAATAAAACTGCACTTAGACTTCGGTTTTTGATAAATTGGCTTGTTACCTCATTACTGCAACTGAAGTTGCCTGCTTCTGATGGGTGTGAAAAAGCAAGTCTTGTCCAAATCTATGGTCCAAAAATCAAATATGAAAGAGGTGCAGCTGTGGCTTTCAATGTGAGAGACAGAAGTAGGGGGCTAATCAATCCAGAGATTGTTCAAAAGCTTGCTGAAAAAGAAGGAATCTCTCTTGGTCTTGGTTTTCTGAGTCATATACAGATTCTTGATGGCTCACGACAGCACCGTGGAGCTCTGAATCTTGAAGACACAACTCTTTGCAGGCCAATGGAGAATGGTCGGCGTGATGGAAAAGGTAGCAGCTTTGTAAGGCTTGAAGTTGTCACAGCCTCACTCGGCTTCCTGACGAATTTTGAGGATGTGTATAAATTATGGGCTTTTGTGGCCAAGTTTCTCAACCCAACATTTATCAGAGAAGGGGGTCTTCCTACCGTTCAAGAAGGCCTTGAGACATGA

Predicted protein sequences of Glyma16g26010

Limit To All Plant Sequences

>Glyma16g26010.2   sequence type=predicted peptide   gene model=Glyma16g26010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHLSLWKPISHCAALIMDKKSRRKDESNVDMRRNPSMLRKLQENKLREALEEASEDGSLSKSQDIDQPDSAANQDDDGLGRSRSLARLHAQREFLRATALAAERIFESQEEIPSLREAFAKFLTMYPKYQSSEKVDQLRSDEYSHLSPKVCLDYCGFGLFSFVQTIHYWESSTFSLSEITANLSNHALYGGAERGTVEHDIKTRIMDYLNIPENEYGLVFTVSRGSAFKLLADSYPFHTNKKLLTMFDHESQSIAWMAQSAREKGAKVHSAWFKWPTLKLCSTDLRKQISNKKKRKKDSATGLFVFPVQSRVTGAKYSYQWMALAQQNNWHVLLDAGSLGPKDMDSLGLSLFRPDFIVTSFYRVFGYDPTGFGCLLIKKSVMQSLQNQSGCTGSGMVKITPEFPMYLSDSVDGLDKLVGIEDDDEITGMGEKTSETRQGTQLPAFSGAFTSAQVRDVFETEMDQDSSERDGTSTIFEETESISVGEVIKSPVFSEDESSDNSFWIDLGQSPLGSDSAGQSNKHKIASPLPPFWFNGRRNQKQHSPKPTSKMYGSPMYNDREVNLGAHEDRHVLSFDAAVLMSQELDRVKEVPEEEHVEEVDHYSRNGNGSDHLHVNEILEEPGTSGVVNNGSWLDSTSLARHQSLENGSTSEICPDVKESAIRRETEGEFRLLGRREGNRYGGGRFFGLEENEANSRGRRVSFSMEDNHKEYLSQTLEPGDMSATSFDDEEVTSDGEYGDGQDWGRKEPEIICRHIDHVNMLGLNKTALRLRFLINWLVTSLLQLKLPASDGCEKASLVQIYGPKIKYERGAAVAFNVRDRSRGLINPEIVQKLAEKEGISLGLGFLSHIQILDGSRQHRGALNLEDTTLCRPMENGRRDGKGSSFVRLEVVTASLGFLTNFEDVYKLWAFVAKFLNPTFIREGGLPTVQEGLET*

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