SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G36860 | AT | Annotation by Michelle Graham. TAIR10: LIM domain-containing protein | chr4:17358580-17361189 REVERSE LENGTH=553 | SoyBase | E_val: 0 | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| KOG1703 | KOG | Adaptor protein Enigma and related PDZ-LIM proteins | JGI | ISS | |
| PTHR24209 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PF00412 | PFAM | LIM domain | JGI | ISS | |
| PF12315 | PFAM | Protein of unknown function (DUF3633) | JGI | ISS | |
| UniRef100_G7LFK8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Disease resistance-like protein n=1 Tax=Medicago truncatula RepID=G7LFK8_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233F4B0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233F4B0 related cluster n=1 Tax=unknown RepID=UPI000233F4B0 | SoyBase | E_val: 0 | ISS |
|
Glyma16g25750 not represented in the dataset |
Glyma16g25750 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g06720 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g142700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g25750.2 sequence type=transcript gene model=Glyma16g25750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAAGGAATGTAAATAAAATACATTCACTCATCGCCTTCTTAAAAGATTCCACTATTGGAGTTTTTATTTATCCCTTTTGGCCTCCCTGTATTTGCGTGTGATCCAAGTACTCCCCTTTTCACTCTTTTCACTCAAAAAGCTATTCCCAGAATCACATAACAGAGAGAGAGAGAGAGAGAGCTATTACTGTGTGGTTGACTATGTGTGTAAATGAGAATCAGAATTCAGAAAAAAAAGTGTACTTGAACTGGGATTCATCTGATTCCTTAACTTGTCTCTCTGCTGATTCATAATCTCTTTAAGAGGTTTTGCCAACCTGCCACAAATAGTATTGCATGGGTTGGTTTACTAAGTTGCTTAAGGGATCCAACCGTAAATCTTCAGGAGGAAGATATCATGGGAAATATGAAGATGACAGAATATCAGAAAATCATGATTGTTCAGCGGATGATTTGATGGATATTGAGAAAGAAGAAATTGATCGGGCCATAGCACTCTCTCTTTCAGAGGCAGATCAGAAAGGGAAAAAAGTTATTGAGGACGACTCTGAATCTGAAGATGATGAACTGTGTCCACTTAGTGACGAGGAAGCTGAATGTGTTGAAGTTCAGCAAGATGAAGATGACCATCATGCTAAAATTCAACAGGATGAAGACAAACATCTTGATGAAGTTCAACTTGAGGAAGATGAACAACTTGCCAGGGCAATTCAAGAAAGTTTGAGCATTAGTTCTCCTCCTCGATCTGACAGTGATTCTTTATTTCAACCTTTTGCACACTTATTCCCACCTGTATACAGAATCTGTGCTGGCTGCAATTCCGAGATTGGCCATGGAAGATTTTTGAGTTGCATGGGAGGTTATTGGCATCCAGAATGTTTTTGTTGCCATGCTTGCAAACTTCCAATCACTGATTATGAGTTTTCCATGTCTGGAAATCGCCGTTATCATAAATCCTGCTATAAGGAGTTGCATCATCCGAGATGTGATGTCTGCAAGAAATTTATCCCACCAAATTCAGCTGGCCTCATTGAGTATAGAGCACATCCTTTCTGGCGACAAAAATATTGTCCATCGCATGAGGGTGATGGTACTCCTCGTTGTTGTAGCTGTCAAAGAATGGAGTCAGTGGATACCAAGTATCTGTTGCTTGATGATGGTCGAAAGCTGTGTCTGGAGTGTCTTGACTCAGCTATCATGGATACTCATGAATGCCAACCTCTCTATGTGGAAATACAAGAGTTTTATGAAGGTTTACATATGAAGATAGAGCAGCAAGTTCCAATGCTTTTGGTTGAGAGACAAGCACTGAACGAGGCTATGGAGGGAGAGAAGAATGGTCATCACCACTTACCTGAAACGAGAGGACTTTGCTTGTCTGAAGAGCAAACTATTCCCACTATTTTAAGGAGACCAAGGATAGGAGCAGGATACCAGCTCATAGATATGATAACTGAGCCTTTTAGGCTGGTCCGTCGTTGTGAAGTGACAGCCATACTTGTTTTGTATGGCCTTCCTAGGTTATTGACTGGATCAATCCTGGCCCACGAAATGATGCATGCATGGCTTAGACTTAAAGGCTATGGCAATCTGAGGCCAGAAGTTGAAGAGGGAATTTGCCAAGTCTTGGCTCATATGTGGTTAGAATCAGAGATTATTCCTGGCACTGGGGATGAAGGTGCATCATCGTCATCATCATCTTCATCTTCCTCATCCTCTTCATCACCTTCGTCCTCTTCATCATCAAAGAAGGGTAAACGTTCCGACTTTGAGAAGAAACTTGGTAAGTATTTCAAACACCAGATTGAGTCAGATAGCTCAGCAGCTTATGGAGATGGATTCAGAGAGGGTAACCAGGCTGTGGCTAAGTATGGACTTAGAAGGACCCTTGACCATATCCGATTGACTGGAAGTTTTCCATATTGAAAAAAATGATATTTGACCCTTATAGAGTGAGTAATTCACTTTATAGAGCAAAGTAAGGGACCTCAACTGTTGATGAGAAAATTAAGGAGTTGTTAAACTTTAACAAATCCATGATTTATTATGCACGAGTGATACCAACTGTTCATTTTTCATCAATGGTTGAGACTTACTTTTCTCTGTAAAGTAAAGATTCACTTTAGAGAAACCAAATCCAGAAATATGATACAATTTTCTTTCCTCTACATCAACCAATATATCAGCTTTGTCAGTTAAATTATATAGGATCCAAAGGCTCCAAAATTATATAATTTTCCACTACTCTGGACTAAATAGGGAATTAAAAATGCTCCTGTTAGTCTGCAGTGGTCAAAATCTTTCTTTTCTTTTCTTTTTTCTTCTAGGGGGTGCGAGTGGGGAGGGGATGAAATGAAATGTGCAGTTGTTGCAATTTCGAGATAAATGTAGGCACCTCATATTCTACATGTATTACAAAATACCTTGCAGCAGTTGGAAATGATAAAACAGTTGAAGTAATTATAGTAAAAGTTTGTATATTTTGTATTTTGCTGATATTCTTTTCTTAAATTTTTCTCCCCACTAGTTTGAAGTTGCAATTGAGAAAGGTGGTATCTCAGTATGTTTGTGGTGACTGTTCAACCGTG
>Glyma16g25750.1 sequence type=CDS gene model=Glyma16g25750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTTGGTTTACTAAGTTGCTTAAGGGATCCAACCGTAAATCTTCAGGAGGAAGATATCATGGGAAATATGAAGATGACAGAATATCAGAAAATCATGATTGTTCAGCGGATGATTTGATGGATATTGAGAAAGAAGAAATTGATCGGGCCATAGCACTCTCTCTTTCAGAGGCAGATCAGAAAGGGAAAAAAGTTATTGAGGACGACTCTGAATCTGAAGATGATGAACTGTGTCCACTTAGTGACGAGGAAGCTGAATGTGTTGAAGTTCAGCAAGATGAAGATGACCATCATGCTAAAATTCAACAGGATGAAGACAAACATCTTGATGAAGTTCAACTTGAGGAAGATGAACAACTTGCCAGGGCAATTCAAGAAAGTTTGAGCATTAGTTCTCCTCCTCGATCTGACAGTGATTCTTTATTTCAACCTTTTGCACACTTATTCCCACCTGTATACAGAATCTGTGCTGGCTGCAATTCCGAGATTGGCCATGGAAGATTTTTGAGTTGCATGGGAGGTTATTGGCATCCAGAATGTTTTTGTTGCCATGCTTGCAAACTTCCAATCACTGATTATGAGTTTTCCATGTCTGGAAATCGCCGTTATCATAAATCCTGCTATAAGGAGTTGCATCATCCGAGATGTGATGTCTGCAAGAAATTTATCCCACCAAATTCAGCTGGCCTCATTGAGTATAGAGCACATCCTTTCTGGCGACAAAAATATTGTCCATCGCATGAGGGTGATGGTACTCCTCGTTGTTGTAGCTGTCAAAGAATGGAGTCAGTGGATACCAAGTATCTGTTGCTTGATGATGGTCGAAAGCTGTGTCTGGAGTGTCTTGACTCAGCTATCATGGATACTCATGAATGCCAACCTCTCTATGTGGAAATACAAGAGTTTTATGAAGGTTTACATATGAAGATAGAGCAGCAAGTTCCAATGCTTTTGGTTGAGAGACAAGCACTGAACGAGGCTATGGAGGGAGAGAAGAATGGTCATCACCACTTACCTGAAACGAGAGGACTTTGCTTGTCTGAAGAGCAAACTATTCCCACTATTTTAAGGAGACCAAGGATAGGAGCAGGATACCAGCTCATAGATATGATAACTGAGCCTTTTAGGCTGGTCCGTCGTTGTGAAGTGACAGCCATACTTGTTTTGTATGGCCTTCCTAGGTTATTGACTGGATCAATCCTGGCCCACGAAATGATGCATGCATGGCTTAGACTTAAAGGCTATGGCAATCTGAGGCCAGAAGTTGAAGAGGGAATTTGCCAAGTCTTGGCTCATATGTGGTTAGAATCAGAGATTATTCCTGGCACTGGGGATGAAGGTGCATCATCGTCATCATCATCTTCATCTTCCTCATCCTCTTCATCACCTTCGTCCTCTTCATCATCAAAGAAGGGTAAACGTTCCGACTTTGAGAAGAAACTTGGTAAGTATTTCAAACACCAGATTGAGTCAGATAGCTCAGCAGCTTATGGAGATGGATTCAGAGAGGGTAACCAGGCTGTGGCTAAGTATGGACTTAGAAGGACCCTTGACCATATCCGATTGACTGGAAGTTTTCCATATTGA >Glyma16g25750.2 sequence type=CDS gene model=Glyma16g25750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTTGGTTTACTAAGTTGCTTAAGGGATCCAACCGTAAATCTTCAGGAGGAAGATATCATGGGAAATATGAAGATGACAGAATATCAGAAAATCATGATTGTTCAGCGGATGATTTGATGGATATTGAGAAAGAAGAAATTGATCGGGCCATAGCACTCTCTCTTTCAGAGGCAGATCAGAAAGGGAAAAAAGTTATTGAGGACGACTCTGAATCTGAAGATGATGAACTGTGTCCACTTAGTGACGAGGAAGCTGAATGTGTTGAAGTTCAGCAAGATGAAGATGACCATCATGCTAAAATTCAACAGGATGAAGACAAACATCTTGATGAAGTTCAACTTGAGGAAGATGAACAACTTGCCAGGGCAATTCAAGAAAGTTTGAGCATTAGTTCTCCTCCTCGATCTGACAGTGATTCTTTATTTCAACCTTTTGCACACTTATTCCCACCTGTATACAGAATCTGTGCTGGCTGCAATTCCGAGATTGGCCATGGAAGATTTTTGAGTTGCATGGGAGGTTATTGGCATCCAGAATGTTTTTGTTGCCATGCTTGCAAACTTCCAATCACTGATTATGAGTTTTCCATGTCTGGAAATCGCCGTTATCATAAATCCTGCTATAAGGAGTTGCATCATCCGAGATGTGATGTCTGCAAGAAATTTATCCCACCAAATTCAGCTGGCCTCATTGAGTATAGAGCACATCCTTTCTGGCGACAAAAATATTGTCCATCGCATGAGGGTGATGGTACTCCTCGTTGTTGTAGCTGTCAAAGAATGGAGTCAGTGGATACCAAGTATCTGTTGCTTGATGATGGTCGAAAGCTGTGTCTGGAGTGTCTTGACTCAGCTATCATGGATACTCATGAATGCCAACCTCTCTATGTGGAAATACAAGAGTTTTATGAAGGTTTACATATGAAGATAGAGCAGCAAGTTCCAATGCTTTTGGTTGAGAGACAAGCACTGAACGAGGCTATGGAGGGAGAGAAGAATGGTCATCACCACTTACCTGAAACGAGAGGACTTTGCTTGTCTGAAGAGCAAACTATTCCCACTATTTTAAGGAGACCAAGGATAGGAGCAGGATACCAGCTCATAGATATGATAACTGAGCCTTTTAGGCTGGTCCGTCGTTGTGAAGTGACAGCCATACTTGTTTTGTATGGCCTTCCTAGGTTATTGACTGGATCAATCCTGGCCCACGAAATGATGCATGCATGGCTTAGACTTAAAGGCTATGGCAATCTGAGGCCAGAAGTTGAAGAGGGAATTTGCCAAGTCTTGGCTCATATGTGGTTAGAATCAGAGATTATTCCTGGCACTGGGGATGAAGGTGCATCATCGTCATCATCATCTTCATCTTCCTCATCCTCTTCATCACCTTCGTCCTCTTCATCATCAAAGAAGGGTAAACGTTCCGACTTTGAGAAGAAACTTGGTAAGTATTTCAAACACCAGATTGAGTCAGATAGCTCAGCAGCTTATGGAGATGGATTCAGAGAGGGTAACCAGGCTGTGGCTAAGTATGGACTTAGAAGGACCCTTGACCATATCCGATTGACTGGAAGTTTTCCATATTGA
>Glyma16g25750.1 sequence type=predicted peptide gene model=Glyma16g25750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGWFTKLLKGSNRKSSGGRYHGKYEDDRISENHDCSADDLMDIEKEEIDRAIALSLSEADQKGKKVIEDDSESEDDELCPLSDEEAECVEVQQDEDDHHAKIQQDEDKHLDEVQLEEDEQLARAIQESLSISSPPRSDSDSLFQPFAHLFPPVYRICAGCNSEIGHGRFLSCMGGYWHPECFCCHACKLPITDYEFSMSGNRRYHKSCYKELHHPRCDVCKKFIPPNSAGLIEYRAHPFWRQKYCPSHEGDGTPRCCSCQRMESVDTKYLLLDDGRKLCLECLDSAIMDTHECQPLYVEIQEFYEGLHMKIEQQVPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTIPTILRRPRIGAGYQLIDMITEPFRLVRRCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYGNLRPEVEEGICQVLAHMWLESEIIPGTGDEGASSSSSSSSSSSSSSPSSSSSSKKGKRSDFEKKLGKYFKHQIESDSSAAYGDGFREGNQAVAKYGLRRTLDHIRLTGSFPY* >Glyma16g25750.2 sequence type=predicted peptide gene model=Glyma16g25750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGWFTKLLKGSNRKSSGGRYHGKYEDDRISENHDCSADDLMDIEKEEIDRAIALSLSEADQKGKKVIEDDSESEDDELCPLSDEEAECVEVQQDEDDHHAKIQQDEDKHLDEVQLEEDEQLARAIQESLSISSPPRSDSDSLFQPFAHLFPPVYRICAGCNSEIGHGRFLSCMGGYWHPECFCCHACKLPITDYEFSMSGNRRYHKSCYKELHHPRCDVCKKFIPPNSAGLIEYRAHPFWRQKYCPSHEGDGTPRCCSCQRMESVDTKYLLLDDGRKLCLECLDSAIMDTHECQPLYVEIQEFYEGLHMKIEQQVPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTIPTILRRPRIGAGYQLIDMITEPFRLVRRCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYGNLRPEVEEGICQVLAHMWLESEIIPGTGDEGASSSSSSSSSSSSSSPSSSSSSKKGKRSDFEKKLGKYFKHQIESDSSAAYGDGFREGNQAVAKYGLRRTLDHIRLTGSFPY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
