Glyma16g25740 - SoyBase

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Report for Sequence Feature Glyma16g25740

Feature Type:	gene_model
Chromosome:	Gm16
Start:	29793613
stop:	29799270
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g25740

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G42050	AT	Annotation by Michelle Graham. TAIR10: vacuolar ATP synthase subunit H family protein \| chr3:14228846-14232228 REVERSE LENGTH=441	SoyBase	E_val: 0	ISS
GO:0000902	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell morphogenesis	SoyBase	N/A	ISS
GO:0006486	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein glycosylation	SoyBase	N/A	ISS
GO:0006623	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole	SoyBase	N/A	ISS
GO:0006816	GO-bp	Annotation by Michelle Graham. GO Biological Process: calcium ion transport	SoyBase	N/A	ISS
GO:0007030	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi organization	SoyBase	N/A	ISS
GO:0007033	GO-bp	Annotation by Michelle Graham. GO Biological Process: vacuole organization	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0015991	GO-bp	Annotation by Michelle Graham. GO Biological Process: ATP hydrolysis coupled proton transport	SoyBase	N/A	ISS
GO:0016049	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell growth	SoyBase	N/A	ISS
GO:0048193	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport	SoyBase	N/A	ISS
GO:0000325	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type vacuole	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0046961	GO-mf	Annotation by Michelle Graham. GO Molecular Function: proton-transporting ATPase activity, rotational mechanism	SoyBase	N/A	ISS
KOG2759	KOG	Vacuolar H+-ATPase V1 sector, subunit H	JGI		ISS
PTHR10698	Panther	VACUOLAR ATP SYNTHASE SUBUNIT H	JGI		ISS
PF03224	PFAM	V-ATPase subunit H	JGI		ISS
PF11698	PFAM	V-ATPase subunit H	JGI		ISS
UniRef100_G7LFK4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: V-type proton ATPase subunit H n=1 Tax=Medicago truncatula RepID=G7LFK4_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233BBD3	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233BBD3 related cluster n=1 Tax=unknown RepID=UPI000233BBD3	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma16g25740

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma16g25740 not represented in the dataset	Glyma16g25740 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma16g25740

Paralog	Evidence	Comments
Glyma02g06710	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma16g25740 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g142600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g25740

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma16g25740

Limit To All Plant Sequences

>Glyma16g25740.3   sequence type=transcript   gene model=Glyma16g25740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACCAGGCCGAATTAACCTCCGAACAGGTTCTGAGGAGGGACATCCCATGGGAGACCTACATGTCCACCAAGCTCATCTCAGGCACCAGCCTTCAGCTCTTAAGGCGCTACGATCACCGGCCAGAGAGTCACAGAGCACAGTTGCTCGATGATGATGGTCCCTCTTATGTTCGCGTGTTTGTTCGTGTTTTGCGTGACATTTTCAAGGAAGATACCGTGGAGTATGTTTTGGCACTGATAGATGAAATGCTTGCTGCAAACCCGAAGAGAGCAAGACTGTTTCATGACAGTGCCCTTGCTGATGAAGATACTTATGAGCCTTTCCTAATAACGACAGCCATTACTTTAGGCAGACTTTTTAAAGAATTTTCTTTTGCTGGGGGTTCACATCCTGCTCTAACCATTGATGATCATATCTTTGTATTGCTCTGGAAAGGAAATTGGTTCATACAAGAGAAAAGTTGTAAGATCCTCGCTTTAATTGTTAGTGTCAGGCCAAAAAATCAGAATGGCATTGTGTCAAATGGAGAAGCATCAAATGGAAAGAAGCCATTTACCACTATTGATGATGTTTTGATAGGATTGGTAAAATGGCTTTGTGATCAGTTGAAGAAACCTTCTCATCCTATTCGTGGAGTCCCGACTGCTATCAATTGCCTAGCAACACTACTTAAGGAACCTGTGGTTAGGTCTTCCTTTGTTCGGGCTGATGGGGTCAAGTTACTTGTACCCTTGATTTCGCCAGCATCCACTCAACAGTCTATTCAGCTTCTTTATGAAACATGTCTCTGCATATGGCTCTTATCCTATTATGAGCCAGCAATTGAATATTTGGCTACTTCTAGAACCCTTCCGCGACTTATTGATGTTGTCAAGAGTTCTACAAAAGAGAAGGTGGTTAGAGTAGTTGTCTTGACTCTTAAGAACTTGATGTCAAAAGGGACATTGGGTGCTCAGATGGTTGACCTTCAGCTGGCACAAGTTGTCCAGAGTTTAAAAGCACAGGCGTGGAGTGATGAGGTGAGATAATTAGAACCTACATTAACTTCTG

Coding sequences of Glyma16g25740

Limit To All Plant Sequences

>Glyma16g25740.2   sequence type=CDS   gene model=Glyma16g25740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACCAGGCCGAATTAACCTCCGAACAGGTTCTGAGGAGGGACATCCCATGGGAGACCTACATGTCCACCAAGCTCATCTCAGGCACCAGCCTTCAGCTCTTAAGGCGCTACGATCACCGGCCAGAGAGTCACAGAGCACAGTTGCTCGATGATGATGGTCCCTCTTATGTTCGCGTGTTTGTTCGTGTTTTGCGTGACATTTTCAAGGAAGATACCGTGGAGTATGTTTTGGCACTGATAGATGAAATGCTTGCTGCAAACCCGAAGAGAGCAAGACTGTTTCATGACAGTGCCCTTGCTGATGAAGATACTTATGAGCCTTTCCTAATAACGACAGCCATTACTTTAGGCAGACTTTTTAAAGAATTTTCTTTTGCTGGGGGTTCACATCCTGCTCTAACCATTGATGATCATATCTTTGTATTGCTCTGGAAAGGAAATTGGTTCATACAAGAGAAAAGTTGTAAGATCCTCGCTTTAATTGTTAGTGTCAGGCCAAAAAATCAGAATGGCATTGTGTCAAATGGAGAAGCATCAAATGGAAAGAAGCCATTTACCACTATTGATGATGTTTTGATAGGATTGGTAAAATGGCTTTGTGATCAGTTGAAGAAACCTTCTCATCCTATTCGTGGAGTCCCGACTGCTATCAATTGCCTAGCAACACTACTTAAGGAACCTGTGGTTAGGTCTTCCTTTGTTCGGGCTGATGGGGTCAAGTTACTTGTACCCTTGATTTCGCCAGCATCCACTCAACAGTCTATTCAGCTTCTTTATGAAACATGTCTCTGCATATGGCTCTTATCCTATTATGAGCCAGCAATTGAATATTTGGCTACTTCTAGAACCCTTCCGCGACTTATTGATGTTGTCAAGAGTTCTACAAAAGAGAAGGTGGTTAGAGTAGTTGTCTTGACTCTTAAGAACTTGATGTCAAAAGGGACATTGGGTGCTCAGATGGTTGACCTTCAGCTGGCACAAGTTGTCCAGAGTTTAAAAGCACAGGCGTGGAGTGATGAGGACTTGTTGGAGGCCCTAAATTCCCTGGAAGAAGGGCTTAAGGATAATATCAAGAGACTAAGTTCTTTTGATATGTACAAGCAAGAAGTTCTCCTTGGCCATCTGGATTGGTCTCCCATGCACAAAGATCCCATATTCTGGCGAGAAAATATAAACAACTTTGAAGAAAATGATTTCCAGATCCTAAGGGTCCTAATAACAATTTTGGACACGTCCAATGATCCAAGGACTCTGGCTGTTGCTTGCTATGACCTTTCACAGTTTATCCAGTGCCATTCTGCTGGACGGATCATTGTGTCAGACCTTAAGGCAAAAGAACGAGTGATGAAACTAATGAATCATGAAAATGCTGAAGTTACTAAAAATGCACTGCTCTGCATCCAGCGGCTTTTCTTAGGTGCAAAGTATGCAAGCTTCTTGCAGGTTTAA

>Glyma16g25740.3   sequence type=CDS   gene model=Glyma16g25740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACCAGGCCGAATTAACCTCCGAACAGGTTCTGAGGAGGGACATCCCATGGGAGACCTACATGTCCACCAAGCTCATCTCAGGCACCAGCCTTCAGCTCTTAAGGCGCTACGATCACCGGCCAGAGAGTCACAGAGCACAGTTGCTCGATGATGATGGTCCCTCTTATGTTCGCGTGTTTGTTCGTGTTTTGCGTGACATTTTCAAGGAAGATACCGTGGAGTATGTTTTGGCACTGATAGATGAAATGCTTGCTGCAAACCCGAAGAGAGCAAGACTGTTTCATGACAGTGCCCTTGCTGATGAAGATACTTATGAGCCTTTCCTAATAACGACAGCCATTACTTTAGGCAGACTTTTTAAAGAATTTTCTTTTGCTGGGGGTTCACATCCTGCTCTAACCATTGATGATCATATCTTTGTATTGCTCTGGAAAGGAAATTGGTTCATACAAGAGAAAAGTTGTAAGATCCTCGCTTTAATTGTTAGTGTCAGGCCAAAAAATCAGAATGGCATTGTGTCAAATGGAGAAGCATCAAATGGAAAGAAGCCATTTACCACTATTGATGATGTTTTGATAGGATTGGTAAAATGGCTTTGTGATCAGTTGAAGAAACCTTCTCATCCTATTCGTGGAGTCCCGACTGCTATCAATTGCCTAGCAACACTACTTAAGGAACCTGTGGTTAGGTCTTCCTTTGTTCGGGCTGATGGGGTCAAGTTACTTGTACCCTTGATTTCGCCAGCATCCACTCAACAGTCTATTCAGCTTCTTTATGAAACATGTCTCTGCATATGGCTCTTATCCTATTATGAGCCAGCAATTGAATATTTGGCTACTTCTAGAACCCTTCCGCGACTTATTGATGTTGTCAAGAGTTCTACAAAAGAGAAGGTGGTTAGAGTAGTTGTCTTGACTCTTAAGAACTTGATGTCAAAAGGGACATTGGGTGCTCAGATGGTTGACCTTCAGCTGGCACAAGTTGTCCAGAGTTTAAAAGCACAGGCGTGGAGTGATGAGGTGAGATAA

Predicted protein sequences of Glyma16g25740

Limit To All Plant Sequences

>Glyma16g25740.2   sequence type=predicted peptide   gene model=Glyma16g25740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDQAELTSEQVLRRDIPWETYMSTKLISGTSLQLLRRYDHRPESHRAQLLDDDGPSYVRVFVRVLRDIFKEDTVEYVLALIDEMLAANPKRARLFHDSALADEDTYEPFLITTAITLGRLFKEFSFAGGSHPALTIDDHIFVLLWKGNWFIQEKSCKILALIVSVRPKNQNGIVSNGEASNGKKPFTTIDDVLIGLVKWLCDQLKKPSHPIRGVPTAINCLATLLKEPVVRSSFVRADGVKLLVPLISPASTQQSIQLLYETCLCIWLLSYYEPAIEYLATSRTLPRLIDVVKSSTKEKVVRVVVLTLKNLMSKGTLGAQMVDLQLAQVVQSLKAQAWSDEDLLEALNSLEEGLKDNIKRLSSFDMYKQEVLLGHLDWSPMHKDPIFWRENINNFEENDFQILRVLITILDTSNDPRTLAVACYDLSQFIQCHSAGRIIVSDLKAKERVMKLMNHENAEVTKNALLCIQRLFLGAKYASFLQV*

>Glyma16g25740.3   sequence type=predicted peptide   gene model=Glyma16g25740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDQAELTSEQVLRRDIPWETYMSTKLISGTSLQLLRRYDHRPESHRAQLLDDDGPSYVRVFVRVLRDIFKEDTVEYVLALIDEMLAANPKRARLFHDSALADEDTYEPFLITTAITLGRLFKEFSFAGGSHPALTIDDHIFVLLWKGNWFIQEKSCKILALIVSVRPKNQNGIVSNGEASNGKKPFTTIDDVLIGLVKWLCDQLKKPSHPIRGVPTAINCLATLLKEPVVRSSFVRADGVKLLVPLISPASTQQSIQLLYETCLCIWLLSYYEPAIEYLATSRTLPRLIDVVKSSTKEKVVRVVVLTLKNLMSKGTLGAQMVDLQLAQVVQSLKAQAWSDEVR*

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