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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G36810 | AT | Annotation by Michelle Graham. TAIR10: geranylgeranyl pyrophosphate synthase 1 | chr4:17343513-17344628 FORWARD LENGTH=371 | SoyBase | E_val: 3.00E-180 | ISS |
| GO:0008299 | GO-bp | Annotation by Michelle Graham. GO Biological Process: isoprenoid biosynthetic process | SoyBase | N/A | ISS |
| GO:0019761 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glucosinolate biosynthetic process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009513 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: etioplast | SoyBase | N/A | ISS |
| GO:0004161 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: dimethylallyltranstransferase activity | SoyBase | N/A | ISS |
| GO:0004311 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: farnesyltranstransferase activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| KOG0776 | KOG | Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase | JGI | ISS | |
| PTHR12001 | Panther | GERANYLGERANYL PYROPHOSPHATE SYNTHASE | JGI | ISS | |
| PTHR12001:SF8 | Panther | gb def: octaprenyl-diphosphate synthase [treponema pallidum] | JGI | ISS | |
| PF00348 | PFAM | Polyprenyl synthetase | JGI | ISS | |
| UniRef100_D6Q1T4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Geranylgeranyl-diphosphate synthase n=1 Tax=Medicago sativa RepID=D6Q1T4_MEDSA | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MNI2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MNI2_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma16g25620 not represented in the dataset |
Glyma16g25620 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g06590 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g141700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g25620.1 sequence type=CDS gene model=Glyma16g25620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGTGCCGTGAATTTGAACACATGGCCACGCCCCAGCTTCATTTTGAACCAAACCGCCACAAGAAGATCCAGATCCTCCCCAACCTCTCATTTCTTTCACGGCGTCAATAAGTTACCGTCACCCATTTCCTCCCTCACCGTTGCCAAACGCTCATTTACGCTCTCGGCGGTGCTGACGAAAGAGGACACCGTGGAGACGGAAGAGAAGCCACCGATTTTCGACTTCAAGAACTACATGGTTTCCAAAGCGAGCGCGGTGAACAAGGCCCTCGACGACGCCGTTTCGCTCCGCGAGCCGCAGAAGATCCACGAGGCGATGCGGTACTCGCTCCTCGCCGGCGGCAAGCGCGTGAGGCCGGTTTTGTGCGTGGCGGCCTGCGAGCTCGTCGGCGGCGAGGAGGCCACGGCGATGCCCGCCGCCTGCGCCATCGAGATGATCCACACCATGTCGCTCATCCACGATGACCTCCCCTGCATGGACAACGACGACCTCCGCCGCGGTAAGCCCACCAACCACAAGGTCTTCGGCGAGGACGTCGCCGTCCTCGCCGGCGACGCGCTCCTCGCCTTCGCCTTCGAGCACATCGCCGCCTCCACCCGGGGCGCCTCCCCGGGGCGGATCGTCCGCGCGATCGGCGAGCTTGCGCGGTCGATCGGCTCCGAGGGACTTGTCGCCGGCCAGGTCGTCGACATCAACTCCGAGGGCCTGGCCGACGTGGACCTCGAGCGCCTCGAGTTCATCCACGTCCACAAGACTGCCGCGCTCCTCGAGGGTGCGGTGGTGCTCGGCGCCATCCTCGGCGGCGGCACCGACGACGAGGTCGAGAAATTGAGAAAATTCGCTCGCTACATTGGTCTGCTCTTTCAGGTTGTTGATGACATTCTCGATGTTACCAAGTCATCTCAGGAATTGGGGAAAACCGCAGGAAAAGACCTTGTGGCAGATAAGGTTACTTACCCCAAACTTTTGGGTATTGAGAAATCTAAGGTGTTTGCTGCGAAGTTGAACAAAGATGCTCAGGATCAGCTTGTTGGGTTTGACCCTGTTAAGGCTGCTCCTTTGATTGCTTTAGCCAATTACATTGCTTATAGGCAGAACTAG
>Glyma16g25620.1 sequence type=predicted peptide gene model=Glyma16g25620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSAVNLNTWPRPSFILNQTATRRSRSSPTSHFFHGVNKLPSPISSLTVAKRSFTLSAVLTKEDTVETEEKPPIFDFKNYMVSKASAVNKALDDAVSLREPQKIHEAMRYSLLAGGKRVRPVLCVAACELVGGEEATAMPAACAIEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALLAFAFEHIAASTRGASPGRIVRAIGELARSIGSEGLVAGQVVDINSEGLADVDLERLEFIHVHKTAALLEGAVVLGAILGGGTDDEVEKLRKFARYIGLLFQVVDDILDVTKSSQELGKTAGKDLVADKVTYPKLLGIEKSKVFAAKLNKDAQDQLVGFDPVKAAPLIALANYIAYRQN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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