Glyma16g25500 - SoyBase

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Report for Sequence Feature Glyma16g25500

Feature Type:	gene_model
Chromosome:	Gm16
Start:	29512183
stop:	29516034
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g25500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G50690	AT	Annotation by Michelle Graham. TAIR10: Leucine-rich repeat (LRR) family protein \| chr3:18835271-18837097 REVERSE LENGTH=447	SoyBase	E_val: 3.00E-115	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
KOG2739	KOG	Leucine-rich acidic nuclear protein	JGI		ISS
PTHR11375	Panther	PHOSPHATASE INHIBITOR-RELATED	JGI		ISS
PF00560	PFAM	Leucine Rich Repeat	JGI		ISS
UniRef100_B6UHU4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Acidic leucine-rich nuclear phosphoprotein 32 family member A n=1 Tax=Zea mays RepID=B6UHU4_MAIZE	SoyBase	E_val: 4.00E-38	ISS
UniRef100_I1MNH0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MNH0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma16g25500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma16g25500

Paralog	Evidence	Comments
Glyma02g06440	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma16g25500 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g140800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g25500

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma16g25500

Limit To All Plant Sequences

>Glyma16g25500.1   sequence type=CDS   gene model=Glyma16g25500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGACATAGGATATCGTATTTGATGGACGAGATCTGGGAGAGAGCTATGGAAACGGCGTTGGACGGCGAGAAGGACCACGCGGCGGCGCGGACGCTAACCCTAGACGGCGCCGTTAAGTGCGTGCAGGGGCGGTTACCTCCGCCGAGCCTTCTGGAGCGGTTCCAGAACCTGCAGCACCTATCGATAGCGAACGTCGGCGTTTCGTCGCTGGAGCAGTTTCCGCGGCTGAGGAATTTGCAGAAGCTGAACCTCTCCGACAACCGGATCGCCGGCGGGCTGGAGTTTCTCGTGCAGGCGGGGCTGGATTCGCTGCGCGACCTCGATTTGTCGAACAATCGGATTCAGTACATTGAGGATCTCGCGCCCCTCGCGCAGGTGAAGCTGGTCTCGCTGGATCTGTACGAGTGCCCCGTGACGCGCGTGAAGGACTATCGATCTAGGGTTTTCGGGTTGATCAAGTCGTTGAAGTACTTGGACAAGATGGATGCGGAGGAGAACGAGAGGCCCGAGAGTGACGACGAGGACGAGGATGAGGACGAGGAGGAGGAGGAGGAGTTAGAAGAGGATGACCCCGGGAGCGGCGAGATTGACGGAGGTGAGGAGGATCGTCCGTTTGGGATTAACAATGGGCACAGTGAGGGCGCTGATGGTGTTGTTGATGCTGATGATGAGGAGGAGAGTGACGCGGATGAGGAGGAGACGGAGTCGTCGAGGCGGATGGTTGTTAATGGGGAGGGCCACCGGGAGAACGGTTTTCGGGTTGCGCCCGTCGAGGGTGACGACGTGGAGGAGGAGGATGACGAGGATGATTCCGGGGAGGAGATTGATGAGGAGGAGGGGGATGACGATGATGTGGTGGAGGTTCATGAGATTGAAGATAGTGATGATGAGGATGGAGTGGAGGAGTACGATGACGAGGACGATGACGAGGATGATGATGAGGAGGAGGAAGAGGTGGATAACGACGAGGGTGATTTTGCGGAACCCGAGAGTACCGGGAGGCTGACGAGTACTGAGGGGGAGATTGATGGGCATGAGCAGGGGGAGGAGGATGGGGATGAGGATGATAATGGGGAGACTGGGGAGGATGAGATGGGGGTCGAAGATGATGGGGAGTTTGAAGATGACGATGAAGAAGAAGACTATGGTGCTGGGTATCTTGTTCAGCCAGTTGGACAGTCTGATGCTCTCAATGCTGGAGGAGCTGATGTGGATGGTGGAAATGATGACGATGGTGAAGAGGAGGATGAAGTTGATGACGACGACGATGATCAGGTGTTGCCTCCTCCTGACTCTTCCCACAAGAGGAAGAGGGATGATGAAGAGGACGTGGACGACGATGACGATGTGGTAGCATTCACGAAGTCACCCAAGAAGCATCATTGA

Predicted protein sequences of Glyma16g25500

Limit To All Plant Sequences

>Glyma16g25500.1   sequence type=predicted peptide   gene model=Glyma16g25500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRHRISYLMDEIWERAMETALDGEKDHAAARTLTLDGAVKCVQGRLPPPSLLERFQNLQHLSIANVGVSSLEQFPRLRNLQKLNLSDNRIAGGLEFLVQAGLDSLRDLDLSNNRIQYIEDLAPLAQVKLVSLDLYECPVTRVKDYRSRVFGLIKSLKYLDKMDAEENERPESDDEDEDEDEEEEEELEEDDPGSGEIDGGEEDRPFGINNGHSEGADGVVDADDEEESDADEEETESSRRMVVNGEGHRENGFRVAPVEGDDVEEEDDEDDSGEEIDEEEGDDDDVVEVHEIEDSDDEDGVEEYDDEDDDEDDDEEEEEVDNDEGDFAEPESTGRLTSTEGEIDGHEQGEEDGDEDDNGETGEDEMGVEDDGEFEDDDEEEDYGAGYLVQPVGQSDALNAGGADVDGGNDDDGEEEDEVDDDDDDQVLPPPDSSHKRKRDDEEDVDDDDDVVAFTKSPKKHH*

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