Glyma16g25476 - SoyBase

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Report for Sequence Feature Glyma16g25476

Feature Type:	gene_model
Chromosome:	Gm16
Start:	29468507
stop:	29469903
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g25476

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G66780	AT	Annotation by Michelle Graham. TAIR10: unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). \| chr5:26663627-26664196 FORWARD LENGTH=121	SoyBase	E_val: 1.00E-17	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_G7KDJ4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Medicago truncatula RepID=G7KDJ4_MEDTR	SoyBase	E_val: 3.00E-28	ISS
UniRef100_Q9FL02	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT5g66780/MUD21_2 n=1 Tax=Arabidopsis thaliana RepID=Q9FL02_ARATH	SoyBase	E_val: 7.00E-15	ISS

Expression Patterns of Glyma16g25476

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma16g25476 not represented in the dataset	Glyma16g25476 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma16g25476 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g140500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g25476

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma16g25476

Limit To All Plant Sequences

>Glyma16g25476.1   sequence type=CDS   gene model=Glyma16g25476   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGCTTCACACAATGAAGAAGTTTCTAACCTATCCATTTACTCCGTTTCCAATATCTCTCTCTTCCAATCTTGGCAGGGGATCAACTTCGGTTCTAACATTCAGCACCCACCCTGATAGTGTTCTGGATAAGACTCAACACCCGACTGAGAAAGCTACAGAGAATGTGATGTCTAATTCGTTTGTGGAAGGGTATGCTTCAAGGTCGGATGAAAAAGGATTTGAAGGGGCTAGTGAAGGAAAACAATCCACATCAAAAGTTGAGATGGATAAGTTCATCCATGAAAATCACCCAGCTTATGACAAGGCACAGAGAAATGAGGTTAAGGAAAAAAACAAAACAAGGCACTAA

Predicted protein sequences of Glyma16g25476

Limit To All Plant Sequences

>Glyma16g25476.1   sequence type=predicted peptide   gene model=Glyma16g25476   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMLHTMKKFLTYPFTPFPISLSSNLGRGSTSVLTFSTHPDSVLDKTQHPTEKATENVMSNSFVEGYASRSDEKGFEGASEGKQSTSKVEMDKFIHENHPAYDKAQRNEVKEKNKTRH*

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