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Report for Sequence Feature Glyma16g25460
Feature Type: gene_model
Chromosome: Gm16
Start: 29420314
stop: 29424221
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma16g25460
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G36640 AT
Annotation by Michelle Graham. TAIR10: Sec14p-like phosphatidylinositol transfer family protein | chr4:17277187-17278447 REVERSE LENGTH=294
SoyBase E_val: 2.00E-143 ISS
GO:0006810 GO-bp
Annotation by Michelle Graham. GO Biological Process: transport
SoyBase N/A ISS
GO:0009611 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to wounding
SoyBase N/A ISS
GO:0009805 GO-bp
Annotation by Michelle Graham. GO Biological Process: coumarin biosynthetic process
SoyBase N/A ISS
GO:0005622 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: intracellular
SoyBase N/A ISS
GO:0005794 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus
SoyBase N/A ISS
GO:0005215 GO-mf
Annotation by Michelle Graham. GO Molecular Function: transporter activity
SoyBase N/A ISS
KOG1470
KOG
Phosphatidylinositol transfer protein PDR16 and related proteins
JGI ISS
PTHR10174 Panther
RETINALDEHYDE BINDING PROTEIN-RELATED
JGI ISS
PTHR10174:SF78 Panther
SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLY
JGI ISS
PF00650 PFAM
CRAL/TRIO domain
JGI ISS
PF03765 PFAM
CRAL/TRIO, N-terminus
JGI ISS
UniRef100_C6TBL7 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TBL7_SOYBN
SoyBase E_val: 0 ISS
UniRef100_G7LES9 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Phosphatidylinositol transfer protein PDR17 n=2 Tax=Medicago truncatula RepID=G7LES9_MEDTR
SoyBase E_val: 1.00E-177 ISS
Expression Patterns of Glyma16g25460
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma16g25460
Paralog Evidence Comments
Glyma02g06380 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma16g25460 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.16g140300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma16g25460
Transcripts of Glyma16g25460
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma16g25460.2 sequence type=transcript gene model=Glyma16g25460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
CTCACTACACAGTACGCACACTCTTCCTTTCTCTCTTTTTCTCATTCTCTGGATCCGATTCAGGAATATTATTATTTTTAATTTCCCCTGTTTGCAAAAAATTAAGAATTGTTTGCGTCGTCAGATTTGAAAGTGCTTCAATTGAAATTTATTTTCATTTTTATTTTAGTCTATTTTATTCCCATTCGTTTCGTAAAGTCAACGCTGCCGGGAGAAGCGTGAAAATAGGGTGTTGATCCCAGTTCTCACGTTTAGTTGTGTAAATGGATCCGTTTCAGAAGAGAGGAAACAAACAAAATTAGGTTCAAAACGTTGACATTCTTCGTGTTGGGAATTAGTGCCTTTGGTGGTCACCATGTTCCTTCTTAGAAGGCAAACCCAGAATCACCATGAGAATGATTCCTCATATCAAGATACAAAGGTGGCTGAACTCAAGACAGCTCTTGGGCCCCTCTCTGGTCGTCAATTAAAGTATTGCACAGATGCATGTCTAAGGAGATATTTAGAAGCAAGGAACTGGAATGTTGATAAAACCAAGAAAATGCTGGAGGAAACACTTGAGTGGAGGGCAACTTATAGGCCAGAGGAAATCCGTTGGGCTGAAATAGCACATGAGGGTGAGACAGGCAAAGTCTCCAGAGCTAACTTTCATGATCGACATGGGAGGGCTGTGCTTATTATGAGGCCAGGGATGCAGAATACAACATCGGCTGAAGATAATATCAGGCATTTAGTCTATCTGTTGGAAAATGCTATCCTGAATCTTTCTGAAGGTCAAGAACAAATGTCATGGTTGATAGACTTCACAGGATTATCACTTAGTACAAATATATCTGTTAAAACATCTCGTGATATTATTCACATTTTACAAAACCACTATCCAGAAAGGCTTGCTATCGCTTTTCTGTACAATCCCCCAAGAATATTTCAGGCTTTCTGGAAGGCCATCAGATTCTTCCTGGATCCCAACACAGTCCAGAAGGTGAAGTTTGTTTATCCTAACAATAAGGACAGTGTGGAGCTGATGAAATCACTCTTCGACATGGAAAACCTTCCAAGTGAATTTGGGGGGAAAACAAGTTTAAAGTATGACCATGAAGAGTTCTCGCGATTGATGACTGAGGATGATGTGAAAACTGCCAAGTTCTGGGGACTTGATGAGGAGCCCTTCAACCCTCCTAAGAAGGGGCATTCTGGAGCAGAGGTGGCACCAGAACCAGTGCCTGTTCAGGCAGTAGTTAGTTAGTTAGTTGAGCAAGTTTTCATACTGTAGTCATTTATAAATTGAAGTGACTACATAACCGAATCATGAAGGAACAAACAATGTAGTAGTGGCTAATTTAAGGAGCCGAATAAGTGGCATTTGGTATCTTTCAACTTTTAACCATGTAGTCGAAGCATCTTGATTTAATCGCTGCTACAGTCCTTTCCTTTTAGGTGAGCGGACTTTAATTCTGATTTGATGTTCAGACTATACATGTTTGTCAATTCCCCTAGACTGTGCATAATGAAGTTTCTTGTGTACAGAGGGATCCCTCCACCTATTTAATATATAATACAAATTATGTCAAATATTATTTTTGATC
Coding sequences of Glyma16g25460
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma16g25460.1 sequence type=CDS gene model=Glyma16g25460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTTCCTTCTTAGAAGGCAAACCCAGAATCACCATGAGAATGATTCCTCATATCAAGATACAAAGGTGGCTGAACTCAAGACAGCTCTTGGGCCCCTCTCTGGTCGTCAATTAAAGTATTGCACAGATGCATGTCTAAGGAGATATTTAGAAGCAAGGAACTGGAATGTTGATAAAACCAAGAAAATGCTGGAGGAAACACTTGAGTGGAGGGCAACTTATAGGCCAGAGGAAATCCGTTGGGCTGAAATAGCACATGAGGGTGAGACAGGCAAAGTCTCCAGAGCTAACTTTCATGATCGACATGGGAGGGCTGTGCTTATTATGAGGCCAGGGATGCAGAATACAACATCGGCTGAAGATAATATCAGGCATTTAGTCTATCTGTTGGAAAATGCTATCCTGAATCTTTCTGAAGGTCAAGAACAAATGTCATGGTTGATAGACTTCACAGGATTATCACTTAGTACAAATATATCTGTTAAAACATCTCGTGATATTATTCACATTTTACAAAACCACTATCCAGAAAGGCTTGCTATCGCTTTTCTGTACAATCCCCCAAGAATATTTCAGGCTTTCTGGAAGGCCATCAGATTCTTCCTGGATCCCAACACAGTCCAGAAGGTGAAGTTTGTTTATCCTAACAATAAGGACAGTGTGGAGCTGATGAAATCACTCTTCGACATGGAAAACCTTCCAAGTGAATTTGGGGGGAAAACAAGTTTAAAGTATGACCATGAAGAGTTCTCGCGATTGATGACTGAGGATGATGTGAAAACTGCCAAGTTCTGGGGACTTGATGAGGAGCCCTTCAACCCTCCTAAGAAGGGGCATTCTGGAGCAGAGGTGGCACCAGAACCAGTGCCTGTTCAGGCAGTAGTTAGTTAG
>Glyma16g25460.2 sequence type=CDS gene model=Glyma16g25460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTTCCTTCTTAGAAGGCAAACCCAGAATCACCATGAGAATGATTCCTCATATCAAGATACAAAGGTGGCTGAACTCAAGACAGCTCTTGGGCCCCTCTCTGGTCGTCAATTAAAGTATTGCACAGATGCATGTCTAAGGAGATATTTAGAAGCAAGGAACTGGAATGTTGATAAAACCAAGAAAATGCTGGAGGAAACACTTGAGTGGAGGGCAACTTATAGGCCAGAGGAAATCCGTTGGGCTGAAATAGCACATGAGGGTGAGACAGGCAAAGTCTCCAGAGCTAACTTTCATGATCGACATGGGAGGGCTGTGCTTATTATGAGGCCAGGGATGCAGAATACAACATCGGCTGAAGATAATATCAGGCATTTAGTCTATCTGTTGGAAAATGCTATCCTGAATCTTTCTGAAGGTCAAGAACAAATGTCATGGTTGATAGACTTCACAGGATTATCACTTAGTACAAATATATCTGTTAAAACATCTCGTGATATTATTCACATTTTACAAAACCACTATCCAGAAAGGCTTGCTATCGCTTTTCTGTACAATCCCCCAAGAATATTTCAGGCTTTCTGGAAGGCCATCAGATTCTTCCTGGATCCCAACACAGTCCAGAAGGTGAAGTTTGTTTATCCTAACAATAAGGACAGTGTGGAGCTGATGAAATCACTCTTCGACATGGAAAACCTTCCAAGTGAATTTGGGGGGAAAACAAGTTTAAAGTATGACCATGAAGAGTTCTCGCGATTGATGACTGAGGATGATGTGAAAACTGCCAAGTTCTGGGGACTTGATGAGGAGCCCTTCAACCCTCCTAAGAAGGGGCATTCTGGAGCAGAGGTGGCACCAGAACCAGTGCCTGTTCAGGCAGTAGTTAGTTAG
Predicted protein sequences of Glyma16g25460
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma16g25460.1 sequence type=predicted peptide gene model=Glyma16g25460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MFLLRRQTQNHHENDSSYQDTKVAELKTALGPLSGRQLKYCTDACLRRYLEARNWNVDKTKKMLEETLEWRATYRPEEIRWAEIAHEGETGKVSRANFHDRHGRAVLIMRPGMQNTTSAEDNIRHLVYLLENAILNLSEGQEQMSWLIDFTGLSLSTNISVKTSRDIIHILQNHYPERLAIAFLYNPPRIFQAFWKAIRFFLDPNTVQKVKFVYPNNKDSVELMKSLFDMENLPSEFGGKTSLKYDHEEFSRLMTEDDVKTAKFWGLDEEPFNPPKKGHSGAEVAPEPVPVQAVVS*
>Glyma16g25460.2 sequence type=predicted peptide gene model=Glyma16g25460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MFLLRRQTQNHHENDSSYQDTKVAELKTALGPLSGRQLKYCTDACLRRYLEARNWNVDKTKKMLEETLEWRATYRPEEIRWAEIAHEGETGKVSRANFHDRHGRAVLIMRPGMQNTTSAEDNIRHLVYLLENAILNLSEGQEQMSWLIDFTGLSLSTNISVKTSRDIIHILQNHYPERLAIAFLYNPPRIFQAFWKAIRFFLDPNTVQKVKFVYPNNKDSVELMKSLFDMENLPSEFGGKTSLKYDHEEFSRLMTEDDVKTAKFWGLDEEPFNPPKKGHSGAEVAPEPVPVQAVVS*