Glyma16g25380 - SoyBase

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Report for Sequence Feature Glyma16g25380

Feature Type:	gene_model
Chromosome:	Gm16
Start:	29335155
stop:	29339324
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g25380

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G66550	AT	Annotation by Michelle Graham. TAIR10: Maf-like protein \| chr5:26559752-26561162 REVERSE LENGTH=207	SoyBase	E_val: 6.00E-92	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG1509	KOG	Predicted nucleic acid-binding protein ASMTL	JGI		ISS
PTHR11746	Panther	O-METHYLTRANSFERASE	JGI		ISS
PTHR11746:SF56	Panther	MAF PROTEIN	JGI		ISS
PF02545	PFAM	Maf-like protein	JGI		ISS
UniRef100_G7LER9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Maf-like protein n=1 Tax=Medicago truncatula RepID=G7LER9_MEDTR	SoyBase	E_val: 1.00E-125	ISS
UniRef100_I1MNF8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MNF8_SOYBN	SoyBase	E_val: 1.00E-144	ISS

Expression Patterns of Glyma16g25380

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma16g25380 not represented in the dataset	Glyma16g25380 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma16g25380

Paralog	Evidence	Comments
Glyma02g06330	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma16g25380 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g139500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g25380

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma16g25380

Limit To All Plant Sequences

>Glyma16g25380.2   sequence type=transcript   gene model=Glyma16g25380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGTTTTTGTAGCCTCCTATTTTTTTCGGAAGCAGCTCTAGACTCTTCTGCAGCTGCAGTTAAGAGCTTCGTGGACATGGCTACCAAAAATCCACCCTTCAAGATAATTCTGGGCTCTTCTTCAAAGGCCCGCAGAGAGATTCTTTCTGAGATGGGATATGAGTTCACAGTAATGACTGCAGACATTGATGAGAAATGTATTAGGAGGGAAAAGCCAGAAGATTTGGTAATGGCATTAGCTGAGGCAAAGGCTGATGCTATTGTGCAAAGGCTCCCTACTGGAGGCCCATTGGAGGAAGATGCTTCTACAACACTGTTAATTACTGCAGACACGGTTGTGGTGTATCGAGGAGTAATAAGGGAAAAACCAACTAGTGAAAAAGAAGCACGTGATTTCATCAAAGGATATTCTGGTAGTCATGCAGCAGTGGTAGGATCTGTTGTTGTAACTAACCTTGCAACTGGAAAACGTTGTGGGGGCTGGGACAGTGCAGAGGTTTACTTCCTTGAAATTCCAGATGAGGTCATTGATAATCTGGTAAACTTTTTAGAAGTACACTTTTCACCCTTGCACTGAATTAAGTATGAAGGTGAAAAGAGTACTTTAACCAGTTTCTCAAAACAGATGATCTTTTGAAACTTTCTTTCAGGAAATTCTTGTCCAACTGAATACTATATGAGTTTTCTTATTTGATGGGAGCTTCTCAGATTGACGAGGGGATTACATTCAACGTTGCTGGAGGTTTGATGCTGGAACATCCACTGACATTGCCCTTTGTGGACGCAGTAGTTGGGTCAACTGATACCGTGATGGGACTTTCCAAAGCTCTTACAGAGAAACTCTTATTGGAAGCACTATAACTGTTGCCACAATGGTACAATTATATTCTGAGATACTAAGTGCTGGCTAACGGCAAAAACTACTGCAATTAAATTCAAATTTTTGGTTTGACCTATTCATGTAATGCAAAATACAAACAAGAATGCCCGAGACTTAACTGATTATTTTGTCACAAGCTGATTTAACTTCAATGATTCATTTCCCAGTCTTGCATG

>Glyma16g25380.3   sequence type=transcript   gene model=Glyma16g25380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTAATCCCTGATGTGAAGCAATCTGACGGTGGCCTTCAAAATAAATTTGAGAACTCCTACCTTTAGTTTTTGTAGCCTCCTATTTTTTTCGGAAGCAGCTCTAGACTCTTCTGCAGCTGCAGTTAAGAGCTTCGTGGACATGGCTACCAAAAATCCACCCTTCAAGATAATTCTGGGCTCTTCTTCAAAGGCCCGCAGAGAGATTCTTTCTGAGATGGGATATGAGTTCACAGTAATGACTGCAGACATTGATGAGAAATGTATTAGGAGGGAAAAGCCAGAAGATTTGGTAATGGCATTAGCTGAGGCAAAGGCTGATGCTATTGTGCAAAGGCTCCCTACTGGAGGCCCATTGGAGGAAGATGCTTCTACAACACTGTTAATTACTGCAGACACGGTTGTGGTGTATCGAGGAGTAATAAGGGAAAAACCAACTAGTGAAAAAGAAGCACGTGATTTCATCAAAGGATATTCTGGTAGTCATGCAGCAGTGGTAGGATCTGTTGTTGTAACTAACCTTGCAACTGGAAAACGTTGTGGGGGCTGGGACAGTGCAGAGGTTTACTTCCTTGAAATTCCAGATGAGGTCATTGATAATCTGGAAATTCTTGTCCAACTGAATACTATATGAGTTTTCTTATTTGATGGGAGCTTCTCAGATTGACGAGGGGATTACATTCAACGTTGCTGGAGGTTTGATGCTGGAACATCCACTGACATTGCCCTTTGTGGACGCAGTAGTTGGGTCAACTGATACCGTGATGGGACTTTCCAAAGCTCTTACAGAGAAACTCTTATTGGAAGCACTATAACTGTTGCCACAATGGTACAATTATATTCTGAGATACTAAGTGCTGGCTAACGGCAAAAACTACTGCAATTAAATTCAAATTTTTGGTTTGACCTATTCATGTAATGCAAAATACAAACAAGAATGCCCGAGACTTAACTGATTATTTTGTCACAAGCTGATTTAACTTCAATGATTCATTTCCCAGTCTTGCATGAAATAACTGATTGTATCAGCAATCCACTCTTGGATTACATATTTGTCACACCAATGAGATGCATCAGTGGTGATTCCTCTGAATTGCCTTTTCCAGTCCAAGGTTGAATATCAGTTCCGGGTGGGGTGGCCATTTCTTTTTACAACAGTACAGTTAGGAAA

>Glyma16g25380.4   sequence type=transcript   gene model=Glyma16g25380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCGGAAGCAGCTCTAGACTCTTCTGCAGCTGCAGTTAAGAGCTTCGTGGACATGGCTACCAAAAATCCACCCTTCAAGATAATTCTGGGCTCTTCTTCAAAGGCCCGCAGAGAGATTCTTTCTGAGATGGGATATGAGTTCACAGTAATGACTGCAGACATTGATGAGAAATGTATTAGGAGGGAAAAGCCAGAAGATTTGGTAATGGCATTAGCTGAGGCAAAGGCTGATGCTATTGTGCAAAGGCTCCCTACTGGAGGCCCATTGGAGGAAGATGCTTCTACAACACTGTTAATTACTGCAGACACGGTTGTGGTGTATCGAGGAGTAATAAGGGAAAAACCAACTAGTGAAAAAGAAGCACGTGATTTCATCAAAGGATATTCTGGTAGTCATGCAGCAGTGGTAGGATCTGTTGTTGTAACTAACCTTGCAACTGGAAAACGTTGTGGGGGCTGGGACAGTGCAGAGGTTTACTTCCTTGAAATTCCAGATGAGGAAATTCTTGTCCAACTGAATACTATATGAGTTTTCTTATTTGATGGGAGCTTCTCAGATTGACGAGGGGATTACATTCAACGTTGCTGGAGGTTTGATGCTGGAACATCCACTGACATTGCCCTTTGTGGACGCAGTAGTTGGGTCAACTGATACCGTGATGGGACTTTCCAAAGCTCTTACAGAGAAACTCTTATTGGAAGCACTATAACTGTTGCCACAATGGTACAATTATATTCTGAGATACTAAGTGCTGGCTAACGGCAAAAACTACTGCAATTAAATTCAAATTTTTGGTTTGACCTATTCATGTAATGCAAAATACAAACAAGAATGCCCGAGACTTAACTGATTATTTTGTCACAAGCTGATTTAACTTCAATGATTCATTTCCCAGTCTTGCATGAAATAACTGATTGTATCAGCAATCCACTCTTGGATTACATATTTGTCACACCAATGAGATGCATCAGTG

Coding sequences of Glyma16g25380

Limit To All Plant Sequences

>Glyma16g25380.1   sequence type=CDS   gene model=Glyma16g25380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTACCAAAAATCCACCCTTCAAGATAATTCTGGGCTCTTCTTCAAAGGCCCGCAGAGAGATTCTTTCTGAGATGGGATATGAGTTCACAGTAATGACTGCAGACATTGATGAGAAATGTATTAGGAGGGAAAAGCCAGAAGATTTGGTAATGGCATTAGCTGAGGCAAAGGCTGATGCTATTGTGCAAAGGCTCCCTACTGGAGGCCCATTGGAGGAAGATGCTTCTACAACACTGTTAATTACTGCAGACACGGTTGTGGTGTATCGAGGAGTAATAAGGGAAAAACCAACTAGTGAAAAAGAAGCACGTGATTTCATCAAAGGATATTCTGGTAGTCATGCAGCAGTGGTAGGATCTGTTGTTGTAACTAACCTTGCAACTGGAAAACGTTGTGGGGGCTGGGACAGTGCAGAGGTTTACTTCCTTGAAATTCCAGATGAGGTCATTGATAATCTGATTGACGAGGGGATTACATTCAACGTTGCTGGAGGTTTGATGCTGGAACATCCACTGACATTGCCCTTTGTGGACGCAGTAGTTGGGTCAACTGATACCGTGATGGGACTTTCCAAAGCTCTTACAGAGAAACTCTTATTGGAAGCACTATAA

>Glyma16g25380.2   sequence type=CDS   gene model=Glyma16g25380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTACCAAAAATCCACCCTTCAAGATAATTCTGGGCTCTTCTTCAAAGGCCCGCAGAGAGATTCTTTCTGAGATGGGATATGAGTTCACAGTAATGACTGCAGACATTGATGAGAAATGTATTAGGAGGGAAAAGCCAGAAGATTTGGTAATGGCATTAGCTGAGGCAAAGGCTGATGCTATTGTGCAAAGGCTCCCTACTGGAGGCCCATTGGAGGAAGATGCTTCTACAACACTGTTAATTACTGCAGACACGGTTGTGGTGTATCGAGGAGTAATAAGGGAAAAACCAACTAGTGAAAAAGAAGCACGTGATTTCATCAAAGGATATTCTGGTAGTCATGCAGCAGTGGTAGGATCTGTTGTTGTAACTAACCTTGCAACTGGAAAACGTTGTGGGGGCTGGGACAGTGCAGAGGTTTACTTCCTTGAAATTCCAGATGAGGTCATTGATAATCTGGTAAACTTTTTAGAAGTACACTTTTCACCCTTGCACTGA

>Glyma16g25380.3   sequence type=CDS   gene model=Glyma16g25380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTACCAAAAATCCACCCTTCAAGATAATTCTGGGCTCTTCTTCAAAGGCCCGCAGAGAGATTCTTTCTGAGATGGGATATGAGTTCACAGTAATGACTGCAGACATTGATGAGAAATGTATTAGGAGGGAAAAGCCAGAAGATTTGGTAATGGCATTAGCTGAGGCAAAGGCTGATGCTATTGTGCAAAGGCTCCCTACTGGAGGCCCATTGGAGGAAGATGCTTCTACAACACTGTTAATTACTGCAGACACGGTTGTGGTGTATCGAGGAGTAATAAGGGAAAAACCAACTAGTGAAAAAGAAGCACGTGATTTCATCAAAGGATATTCTGGTAGTCATGCAGCAGTGGTAGGATCTGTTGTTGTAACTAACCTTGCAACTGGAAAACGTTGTGGGGGCTGGGACAGTGCAGAGGTTTACTTCCTTGAAATTCCAGATGAGGTCATTGATAATCTGGAAATTCTTGTCCAACTGAATACTATATGA

>Glyma16g25380.4   sequence type=CDS   gene model=Glyma16g25380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTACCAAAAATCCACCCTTCAAGATAATTCTGGGCTCTTCTTCAAAGGCCCGCAGAGAGATTCTTTCTGAGATGGGATATGAGTTCACAGTAATGACTGCAGACATTGATGAGAAATGTATTAGGAGGGAAAAGCCAGAAGATTTGGTAATGGCATTAGCTGAGGCAAAGGCTGATGCTATTGTGCAAAGGCTCCCTACTGGAGGCCCATTGGAGGAAGATGCTTCTACAACACTGTTAATTACTGCAGACACGGTTGTGGTGTATCGAGGAGTAATAAGGGAAAAACCAACTAGTGAAAAAGAAGCACGTGATTTCATCAAAGGATATTCTGGTAGTCATGCAGCAGTGGTAGGATCTGTTGTTGTAACTAACCTTGCAACTGGAAAACGTTGTGGGGGCTGGGACAGTGCAGAGGTTTACTTCCTTGAAATTCCAGATGAGGAAATTCTTGTCCAACTGAATACTATATGA

Predicted protein sequences of Glyma16g25380

Limit To All Plant Sequences

>Glyma16g25380.1   sequence type=predicted peptide   gene model=Glyma16g25380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATKNPPFKIILGSSSKARREILSEMGYEFTVMTADIDEKCIRREKPEDLVMALAEAKADAIVQRLPTGGPLEEDASTTLLITADTVVVYRGVIREKPTSEKEARDFIKGYSGSHAAVVGSVVVTNLATGKRCGGWDSAEVYFLEIPDEVIDNLIDEGITFNVAGGLMLEHPLTLPFVDAVVGSTDTVMGLSKALTEKLLLEAL*

>Glyma16g25380.2   sequence type=predicted peptide   gene model=Glyma16g25380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATKNPPFKIILGSSSKARREILSEMGYEFTVMTADIDEKCIRREKPEDLVMALAEAKADAIVQRLPTGGPLEEDASTTLLITADTVVVYRGVIREKPTSEKEARDFIKGYSGSHAAVVGSVVVTNLATGKRCGGWDSAEVYFLEIPDEVIDNLVNFLEVHFSPLH*

>Glyma16g25380.3   sequence type=predicted peptide   gene model=Glyma16g25380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATKNPPFKIILGSSSKARREILSEMGYEFTVMTADIDEKCIRREKPEDLVMALAEAKADAIVQRLPTGGPLEEDASTTLLITADTVVVYRGVIREKPTSEKEARDFIKGYSGSHAAVVGSVVVTNLATGKRCGGWDSAEVYFLEIPDEVIDNLEILVQLNTI*

>Glyma16g25380.4   sequence type=predicted peptide   gene model=Glyma16g25380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATKNPPFKIILGSSSKARREILSEMGYEFTVMTADIDEKCIRREKPEDLVMALAEAKADAIVQRLPTGGPLEEDASTTLLITADTVVVYRGVIREKPTSEKEARDFIKGYSGSHAAVVGSVVVTNLATGKRCGGWDSAEVYFLEIPDEEILVQLNTI*

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