SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G18360 | AT | Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein | chr2:7976848-7979221 REVERSE LENGTH=313 | SoyBase | E_val: 1.00E-150 | ISS |
| GO:0016787 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity | SoyBase | N/A | ISS |
| KOG1454 | KOG | Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) | JGI | ISS | |
| PTHR10992 | Panther | ALPHA/BETA HYDROLASE RELATED | JGI | ISS | |
| PTHR10992:SF162 | Panther | HYDROLASE-RELATED | JGI | ISS | |
| PF00561 | PFAM | alpha/beta hydrolase fold | JGI | ISS | |
| UniRef100_G7LDX9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Epoxide hydrolase n=1 Tax=Medicago truncatula RepID=G7LDX9_MEDTR | SoyBase | E_val: 2.00E-180 | ISS |
| UniRef100_I1MNF5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MNF5_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma16g25330 not represented in the dataset |
Glyma16g25330 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g06300 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g25330.2 sequence type=transcript gene model=Glyma16g25330 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GGTATAGAACAAAATAAATTATGCATTAGTGAGCGACGATTAGAACAAAACATAATTATAAATTGTGACAGTGTATTGAAACCTGTCTTCCATAAATACGGTTCCTCTCTATATGGCAACAGGTAACAACCTCGACTTTACTTTTCTACTATCTCTTTTGAAACGGTCTATTTGAAACATATAGTTTTCATTATTTTTTAAAATTAAATCAGGATATAGTTTTGAATGGACAGCACCAAAACAATTTGAAGAAGTCATATCCATAACAACCTAACACCAAACCTTACTAATCCAAGTTAAGCCTCCTCGTATATATATAATAATAACAAACCCTTATCCATTTTCGTGAAGTGATCACATAGAGAGAGACCATGGTGAACCTAGTGATAGCAGAGAGGCTATTGCTGCATGGTCTCATGAACATGGCGGGTATCAGGCCGTACACGGTGGAGATAGAGCCTGGGACCGCCATGAACTTTTGGATCCCCTCGGAGACCATAACGAAGCCAAAGAAAAAGGACAAGAAGCCCAGAATCACCGCGAAGCCCAACAAGCCTGCGGTGGTTCTGGTACACGGCTTCGCAGCCGAGGGGATCATGACATGGCAGTTCCAAGTAGGCGCACTTACAAAAAAGTACGCTGTTTATGTTCCAGATCTTCTCTTCTTTGGAGGCTCGGCGACCAATAAACCTAATCGGTCGCCGAGGTTCCAAGCGGAGTGTTTGGTGGCGGGGTTGAGGAAGCTCGGGGTGGAGAAGTGCGTGGTGGTAGGGTTCAGCTATGGGGGGATGGTGGCGTTTAAGATGGCTGAGATGTACCCAGAATTGGTTCTAGGGTTGGTCATCTCAGGGTCCATTTTGGCCATGTCGGAGTCACTCAGCACCACCTTGCTGCAAGAGCTTGGGGTCTCTTCTTTCTCGGAGCTCTTGCTGCCTACTTCTGTTAAGGGTCTTAAGGCACTCTTCTCGATCGCTGCTCACAAAAAACTCAGGTTCCCCAATCGTTTGTTAAAAGATTATCTTGAGGTGATGTTCACGAATAGGAAGGAGCGAAGTGAGCTATTGGAGGGCTTAGTAATTACCAACAGAGATGTCACAATCCCAAATTTTCCGCAGAGAATACATCTTTTATGGGGAGAGAATGATCGAATTTTCAAACTGGAGCTTGCCCAAAGTATGAAAGAAGAGTTGTTGAGAGTATGGTAATGAACATACACGTCTGATATATCCAATGACTGCAGACAACTAGGGAATGGCACAACGTTTGAAGGCATAAAGAAAGCTGGTCACCTGGTTCACCTGGAGCGACCCTGTGTCTACAATAGATGCCTCAAGCATATTATTGCTTCCTTCTTGGACTCAAATGAACTCAAAAAATGATTAATCTATTACATCTTCAACTTTATTATATTTTGATTCGTCTTTGGCCTAAGATATGAAGGAGATATCAAAGATATATATGTTGTCTCTAATATCCATTATATTGTAGCTAGTATTCTAGCTAATTAACAGTTAGACTACTCTTCGTATGATGATTTTACTGTTCGTTCCTTCCCATTCTTCTCCATTTTTTTTATTTTGAGAAAAA >Glyma16g25330.3 sequence type=transcript gene model=Glyma16g25330 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GGTATAGAACAAAATAAATTATGCATTAGTGAGCGACGATTAGAACAAAACATAATTATAAATTGTGACAGTGTATTGAAACCTGTCTTCCATAAATACGGTTCCTCTCTATATGGCAACAGGTAACAACCTCGACTTTACTTTTCTACTATCTCTTTTGAAACGGTCTATTTGAAACATATAGTTTTCATTATTTTTTAAAATTAAATCAGGATATAGTTTTGAATGGACAGCACCAAAACAATTTGAAGAAGTCATATCCATAACAACCTAACACCAAACCTTACTAATCCAAGTTAAGCCTCCTCGTATATATATAATAATAACAAACCCTTATCCATTTTCGTGAAGTGATCACATAGAGAGAGACCATGGTGAACCTAGTGATAGCAGAGAGGCTATTGCTGCATGGTCTCATGAACATGGCGGGTATCAGGCCGTACACGGTGGAGATAGAGCCTGGGACCGCCATGAACTTTTGGATCCCCTCGGAGACCATAACGAAGCCAAAGAAAAAGGACAAGAAGCCCAGAATCACCGCGAAGCCCAACAAGCCTGCGGTGGTTCTGGTACACGGCTTCGCAGCCGAGGGGATCATGACATGGCAGTTCCAAGTAGGCGCACTTACAAAAAAGTACGCTGTTTATGTTCCAGATCTTCTCTTCTTTGGAGGCTCGGCGACCAATAAACCTAATCGGTCGCCGAGGTTCCAAGCGGAGTGTTTGGTGGCGGGGTTGAGGAAGCTCGGGGTGGAGAAGTGCGTGGTGGTAGGGTTCAGCTATGGGGGGATGGTGGCGTTTAAGATGGCTGAGATGTACCCAGAATTGGTTCTAGGGTTGGTCATCTCAGGGTCCATTTTGGCCATGTCGGAGTCACTCAGCACCACCTTGCTGCAAGAGCTTGGGGTCTCTTCTTTCTCGGAGCTCTTGCTGCCTACTTCTGTTAAGGGTCTTAAGGCACTCTTCTCGATCGCTGCTCACAAAAAACTCAGGTTCCCCAATCGTTTGTTAAAAGATTATCTTGAGAGGTGTTTGAATTCACATGACTACACTGAGACATGCATTCTGACATGCATGCGCTCATGAGTTGATGGCATTAGGTCCCACAATAATTGAGCCAAGTTATTGATAAGGTTTTAATAGATTTGAATCTTCTTGATCTCCATTAAATATCACGGTGTGTCTCCATTAATGGTGGTATAATGCATGCTGTCAG
>Glyma16g25330.1 sequence type=CDS gene model=Glyma16g25330 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTGAACCTAGTGATAGCAGAGAGGCTATTGCTGCATGGTCTCATGAACATGGCGGGTATCAGGCCGTACACGGTGGAGATAGAGCCTGGGACCGCCATGAACTTTTGGATCCCCTCGGAGACCATAACGAAGCCAAAGAAAAAGGACAAGAAGCCCAGAATCACCGCGAAGCCCAACAAGCCTGCGGTGGTTCTGGTACACGGCTTCGCAGCCGAGGGGATCATGACATGGCAGTTCCAAGTAGGCGCACTTACAAAAAAGTACGCTGTTTATGTTCCAGATCTTCTCTTCTTTGGAGGCTCGGCGACCAATAAACCTAATCGGTCGCCGAGGTTCCAAGCGGAGTGTTTGGTGGCGGGGTTGAGGAAGCTCGGGGTGGAGAAGTGCGTGGTGGTAGGGTTCAGCTATGGGGGGATGGTGGCGTTTAAGATGGCTGAGATGTACCCAGAATTGGTTCTAGGGTTGGTCATCTCAGGGTCCATTTTGGCCATGTCGGAGTCACTCAGCACCACCTTGCTGCAAGAGCTTGGGGTCTCTTCTTTCTCGGAGCTCTTGCTGCCTACTTCTGTTAAGGGTCTTAAGGCACTCTTCTCGATCGCTGCTCACAAAAAACTCAGGTTCCCCAATCGTTTGTTAAAAGATTATCTTGAGGTGATGTTCACGAATAGGAAGGAGCGAAGTGAGCTATTGGAGGGCTTAGTAATTACCAACAGAGATGTCACAATCCCAAATTTTCCGCAGAGAATACATCTTTTATGGGGAGAGAATGATCGAATTTTCAAACTGGAGCTTGCCCAAAGTATGAAAGAACAACTAGGGAATGGCACAACGTTTGAAGGCATAAAGAAAGCTGGTCACCTGGTTCACCTGGAGCGACCCTGTGTCTACAATAGATGCCTCAAGCATATTATTGCTTCCTTCTTGGACTCAAATGAACTCAAAAAATGA >Glyma16g25330.2 sequence type=CDS gene model=Glyma16g25330 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTGAACCTAGTGATAGCAGAGAGGCTATTGCTGCATGGTCTCATGAACATGGCGGGTATCAGGCCGTACACGGTGGAGATAGAGCCTGGGACCGCCATGAACTTTTGGATCCCCTCGGAGACCATAACGAAGCCAAAGAAAAAGGACAAGAAGCCCAGAATCACCGCGAAGCCCAACAAGCCTGCGGTGGTTCTGGTACACGGCTTCGCAGCCGAGGGGATCATGACATGGCAGTTCCAAGTAGGCGCACTTACAAAAAAGTACGCTGTTTATGTTCCAGATCTTCTCTTCTTTGGAGGCTCGGCGACCAATAAACCTAATCGGTCGCCGAGGTTCCAAGCGGAGTGTTTGGTGGCGGGGTTGAGGAAGCTCGGGGTGGAGAAGTGCGTGGTGGTAGGGTTCAGCTATGGGGGGATGGTGGCGTTTAAGATGGCTGAGATGTACCCAGAATTGGTTCTAGGGTTGGTCATCTCAGGGTCCATTTTGGCCATGTCGGAGTCACTCAGCACCACCTTGCTGCAAGAGCTTGGGGTCTCTTCTTTCTCGGAGCTCTTGCTGCCTACTTCTGTTAAGGGTCTTAAGGCACTCTTCTCGATCGCTGCTCACAAAAAACTCAGGTTCCCCAATCGTTTGTTAAAAGATTATCTTGAGGTGATGTTCACGAATAGGAAGGAGCGAAGTGAGCTATTGGAGGGCTTAGTAATTACCAACAGAGATGTCACAATCCCAAATTTTCCGCAGAGAATACATCTTTTATGGGGAGAGAATGATCGAATTTTCAAACTGGAGCTTGCCCAAAGTATGAAAGAAGAGTTGTTGAGAGTATGGTAA >Glyma16g25330.3 sequence type=CDS gene model=Glyma16g25330 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTGAACCTAGTGATAGCAGAGAGGCTATTGCTGCATGGTCTCATGAACATGGCGGGTATCAGGCCGTACACGGTGGAGATAGAGCCTGGGACCGCCATGAACTTTTGGATCCCCTCGGAGACCATAACGAAGCCAAAGAAAAAGGACAAGAAGCCCAGAATCACCGCGAAGCCCAACAAGCCTGCGGTGGTTCTGGTACACGGCTTCGCAGCCGAGGGGATCATGACATGGCAGTTCCAAGTAGGCGCACTTACAAAAAAGTACGCTGTTTATGTTCCAGATCTTCTCTTCTTTGGAGGCTCGGCGACCAATAAACCTAATCGGTCGCCGAGGTTCCAAGCGGAGTGTTTGGTGGCGGGGTTGAGGAAGCTCGGGGTGGAGAAGTGCGTGGTGGTAGGGTTCAGCTATGGGGGGATGGTGGCGTTTAAGATGGCTGAGATGTACCCAGAATTGGTTCTAGGGTTGGTCATCTCAGGGTCCATTTTGGCCATGTCGGAGTCACTCAGCACCACCTTGCTGCAAGAGCTTGGGGTCTCTTCTTTCTCGGAGCTCTTGCTGCCTACTTCTGTTAAGGGTCTTAAGGCACTCTTCTCGATCGCTGCTCACAAAAAACTCAGGTTCCCCAATCGTTTGTTAAAAGATTATCTTGAGAGGTGTTTGAATTCACATGACTACACTGAGACATGCATTCTGACATGCATGCGCTCATGA
>Glyma16g25330.1 sequence type=predicted peptide gene model=Glyma16g25330 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVNLVIAERLLLHGLMNMAGIRPYTVEIEPGTAMNFWIPSETITKPKKKDKKPRITAKPNKPAVVLVHGFAAEGIMTWQFQVGALTKKYAVYVPDLLFFGGSATNKPNRSPRFQAECLVAGLRKLGVEKCVVVGFSYGGMVAFKMAEMYPELVLGLVISGSILAMSESLSTTLLQELGVSSFSELLLPTSVKGLKALFSIAAHKKLRFPNRLLKDYLEVMFTNRKERSELLEGLVITNRDVTIPNFPQRIHLLWGENDRIFKLELAQSMKEQLGNGTTFEGIKKAGHLVHLERPCVYNRCLKHIIASFLDSNELKK* >Glyma16g25330.2 sequence type=predicted peptide gene model=Glyma16g25330 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVNLVIAERLLLHGLMNMAGIRPYTVEIEPGTAMNFWIPSETITKPKKKDKKPRITAKPNKPAVVLVHGFAAEGIMTWQFQVGALTKKYAVYVPDLLFFGGSATNKPNRSPRFQAECLVAGLRKLGVEKCVVVGFSYGGMVAFKMAEMYPELVLGLVISGSILAMSESLSTTLLQELGVSSFSELLLPTSVKGLKALFSIAAHKKLRFPNRLLKDYLEVMFTNRKERSELLEGLVITNRDVTIPNFPQRIHLLWGENDRIFKLELAQSMKEELLRVW* >Glyma16g25330.3 sequence type=predicted peptide gene model=Glyma16g25330 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVNLVIAERLLLHGLMNMAGIRPYTVEIEPGTAMNFWIPSETITKPKKKDKKPRITAKPNKPAVVLVHGFAAEGIMTWQFQVGALTKKYAVYVPDLLFFGGSATNKPNRSPRFQAECLVAGLRKLGVEKCVVVGFSYGGMVAFKMAEMYPELVLGLVISGSILAMSESLSTTLLQELGVSSFSELLLPTSVKGLKALFSIAAHKKLRFPNRLLKDYLERCLNSHDYTETCILTCMRS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
