Glyma16g25220 - SoyBase

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Report for Sequence Feature Glyma16g25220

Feature Type:	gene_model
Chromosome:	Gm16
Start:	29158789
stop:	29161635
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g25220

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G18290	AT	Annotation by Michelle Graham. TAIR10: anaphase promoting complex 10 \| chr2:7948522-7950096 REVERSE LENGTH=192	SoyBase	E_val: 1.00E-120	ISS
GO:0007276	GO-bp	Annotation by Michelle Graham. GO Biological Process: gamete generation	SoyBase	N/A	ISS
GO:0008283	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell proliferation	SoyBase	N/A	ISS
GO:0010087	GO-bp	Annotation by Michelle Graham. GO Biological Process: phloem or xylem histogenesis	SoyBase	N/A	ISS
GO:0030071	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of mitotic metaphase/anaphase transition	SoyBase	N/A	ISS
GO:0031145	GO-bp	Annotation by Michelle Graham. GO Biological Process: anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0032875	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of DNA endoreduplication	SoyBase	N/A	ISS
GO:0032876	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of DNA endoreduplication	SoyBase	N/A	ISS
GO:0042023	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA endoreduplication	SoyBase	N/A	ISS
GO:0043161	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasomal ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0043248	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasome assembly	SoyBase	N/A	ISS
GO:0051302	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of cell division	SoyBase	N/A	ISS
GO:0051510	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of unidimensional cell growth	SoyBase	N/A	ISS
GO:0051788	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to misfolded protein	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005680	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: anaphase-promoting complex	SoyBase	N/A	ISS
GO:0016604	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nuclear body	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG3437	KOG	Anaphase-promoting complex (APC), subunit 10	JGI		ISS
PTHR12936	Panther	ANAPHASE-PROMOTING COMPLEX 10	JGI		ISS
PF03256	PFAM	Anaphase-promoting complex, subunit 10 (APC10)	JGI		ISS
UniRef100_B9S6F0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Anaphase-promoting complex, putative n=1 Tax=Ricinus communis RepID=B9S6F0_RICCO	SoyBase	E_val: 4.00E-121	ISS
UniRef100_I1MNE4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MNE4_SOYBN	SoyBase	E_val: 5.00E-140	ISS

Expression Patterns of Glyma16g25220

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma16g25220 not represented in the dataset	Glyma16g25220 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma16g25220

Paralog	Evidence	Comments
Glyma02g06190	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma16g25220 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g138200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g25220

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma16g25220

Limit To All Plant Sequences

>Glyma16g25220.2   sequence type=transcript   gene model=Glyma16g25220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTTAAAACCAGGCCTAATTTTAATTCTAATTTATAAAAACTGAAAAACATAAAACTAAAAGTCCCCCCTTTGTTTTTTTTTAGTTGTTGTTGTGTACTTGTGTTTCAATTCATTCTTCGGTTGTTCTCTATTTGCGTTTTCTCATTTTCTTTCTTTCGTTCTCTTCCGTGGAACGAGTAGTAGAAACTTGAAATCAAAAGGCAGCGGGGGAAAAAGAAAAGAGAGAAGTAGGGTTCGAAAATGGCAGCAGAATCATCAGAGGGCGAAGAAGAAACCAAGTTAAGCGGAGGTAACCAATTGCTCATAGTTGACGATGACTTAACGGAAATGGGAAAGAAAGCCGCTTGGAGCGTGAGTTCCTGCAAACCCGGTAACGGCGTTTCCTCTCTCCGTGACGACAATCTCGAAACTTATTGGCAATCCGACGGAGGGCAACCCCATTTAGTTAACATTCAGTTTCAGAAGAAAGTTAGACTTCAATTAATTGTGCTGTACGTGGATTTCAAGCTTGACGAGAGTTACACGCCGAGCAAAGTTTCCATCCGTGCCGGTGATGGTTTTCACAACTTGAAGGAGATTAAGACCGTGGAACTCGTGAAGCCAACTGGATGGGTTTATCTTTCCTTGTCTGGAGTTGATCCTAGGGATACCTTTGTGAATACTTTCATGTTGCAAATTGCTGTGTTGTCAAACCATCTCAATGGAAGGGATACTCACGTGCGGCAGATCAAAGTTTACGGGCCTCGACCGTGTGTCTCCTTTTACTTTTGAAACAATTTCTTAGATACAGTTATAA

Coding sequences of Glyma16g25220

Limit To All Plant Sequences

>Glyma16g25220.1   sequence type=CDS   gene model=Glyma16g25220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGCAGAATCATCAGAGGGCGAAGAAGAAACCAAGTTAAGCGGAGGTAACCAATTGCTCATAGTTGACGATGACTTAACGGAAATGGGAAAGAAAGCCGCTTGGAGCGTGAGTTCCTGCAAACCCGGTAACGGCGTTTCCTCTCTCCGTGACGACAATCTCGAAACTTATTGGCAATCCGACGGAGGGCAACCCCATTTAGTTAACATTCAGTTTCAGAAGAAAGTTAGACTTCAATTAATTGTGCTGTACGTGGATTTCAAGCTTGACGAGAGTTACACGCCGAGCAAAGTTTCCATCCGTGCCGGTGATGGTTTTCACAACTTGAAGGAGATTAAGACCGTGGAACTCGTGAAGCCAACTGGATGGGTTTATCTTTCCTTGTCTGGAGTTGATCCTAGGGATACCTTTGTGAATACTTTCATGTTGCAAATTGCTGTGTTGTCAAACCATCTCAATGGAAGGGATACTCACGTGCGGCAGATCAAAGTTTACGGGCCTCGACCGAACCCTATCCCACATCAGCCATTCCAATTTACTTCAAGGGAATTCATCACCTACTCTTCTATAAGATGA

>Glyma16g25220.2   sequence type=CDS   gene model=Glyma16g25220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGCAGAATCATCAGAGGGCGAAGAAGAAACCAAGTTAAGCGGAGGTAACCAATTGCTCATAGTTGACGATGACTTAACGGAAATGGGAAAGAAAGCCGCTTGGAGCGTGAGTTCCTGCAAACCCGGTAACGGCGTTTCCTCTCTCCGTGACGACAATCTCGAAACTTATTGGCAATCCGACGGAGGGCAACCCCATTTAGTTAACATTCAGTTTCAGAAGAAAGTTAGACTTCAATTAATTGTGCTGTACGTGGATTTCAAGCTTGACGAGAGTTACACGCCGAGCAAAGTTTCCATCCGTGCCGGTGATGGTTTTCACAACTTGAAGGAGATTAAGACCGTGGAACTCGTGAAGCCAACTGGATGGGTTTATCTTTCCTTGTCTGGAGTTGATCCTAGGGATACCTTTGTGAATACTTTCATGTTGCAAATTGCTGTGTTGTCAAACCATCTCAATGGAAGGGATACTCACGTGCGGCAGATCAAAGTTTACGGGCCTCGACCGTGTGTCTCCTTTTACTTTTGA

Predicted protein sequences of Glyma16g25220

Limit To All Plant Sequences

>Glyma16g25220.1   sequence type=predicted peptide   gene model=Glyma16g25220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAESSEGEEETKLSGGNQLLIVDDDLTEMGKKAAWSVSSCKPGNGVSSLRDDNLETYWQSDGGQPHLVNIQFQKKVRLQLIVLYVDFKLDESYTPSKVSIRAGDGFHNLKEIKTVELVKPTGWVYLSLSGVDPRDTFVNTFMLQIAVLSNHLNGRDTHVRQIKVYGPRPNPIPHQPFQFTSREFITYSSIR*

>Glyma16g25220.2   sequence type=predicted peptide   gene model=Glyma16g25220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAESSEGEEETKLSGGNQLLIVDDDLTEMGKKAAWSVSSCKPGNGVSSLRDDNLETYWQSDGGQPHLVNIQFQKKVRLQLIVLYVDFKLDESYTPSKVSIRAGDGFHNLKEIKTVELVKPTGWVYLSLSGVDPRDTFVNTFMLQIAVLSNHLNGRDTHVRQIKVYGPRPCVSFYF*

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