SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G36520 | AT | Annotation by Michelle Graham. TAIR10: Chaperone DnaJ-domain superfamily protein | chr4:17230589-17235435 REVERSE LENGTH=1422 | SoyBase | E_val: 2.00E-103 | ISS |
| GO:0031072 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: heat shock protein binding | SoyBase | N/A | ISS |
| KOG0431 | KOG | Auxilin-like protein and related proteins containing DnaJ domain | JGI | ISS | |
| PTHR23172 | Panther | AUXILIN/CYCLIN G-ASSOCIATED KINASE-RELATED | JGI | ISS | |
| PTHR23172:SF31 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00226 | PFAM | DnaJ domain | JGI | ISS | |
| UniRef100_B9S6D7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Auxilin, putative n=1 Tax=Ricinus communis RepID=B9S6D7_RICCO | SoyBase | E_val: 6.00E-113 | ISS |
| UniRef100_I1MNE0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MNE0_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma16g25150 not represented in the dataset |
Glyma16g25150 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g137500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g25150.2 sequence type=CDS gene model=Glyma16g25150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATTGGAAAAGGTGTTGTGGAAAATCTAAAGGATAACAGGGGAAAAGGAGCTTCTGAAATGTCCCAAGGAGAAGCAGAGCATTCAGGAAAGGTGGCTTGCACTGCAACAAATTTCAATGGTGATGAGCATAGTTTTAGTTGTGAACAGACATGCACTGAGAAAACTAAGACTGCCCCTCAAATGAAATTTGATGCTCAAAGTGGAGAGAGGAAAATTGGTGAGAGAGGAAATACTAAACAACATCTGAATGTTGCAATAAACCCCGAAGAAAGCAGGGACCAAATGTCATCAAGCCAAGGTGATTACAGAAGGAACACAATAGCAGATGAACCTGCTGCAGTGCAAGAAGTGGGGAATATCCAGAAACCTTCTCAAAGGGCTCATGTATCACATTCCACCAAAAGCAAAGAGAAAAATCTTAATGAAACTTCTGCCTCAGTAGAGAAAGATATGGAAGAGGAGATGGAGAGAGAAAGGGAAAGACAGAAAGACAAAATGGCTGTTGATAGTGCAATGCTAGAGGCTGAGAGGGAAAAGGAAAAAGAAAAAGATAGGATGGCGGTTGATAAAGCAACTTTGGAGGCTCGTGATAGAACATATGTTGATGCTCGTGAGAGAGCAGAAAGGGCTGCATTTGAGAGAGAACCTACAGAAGCTCGACAAAGAGCGCTGGCTGAGGCCAGAGAAAGACTTGAAAAGGCATGCACTAAGGCCAGGGACAAAACATATGCTGATAAGGCAGCTGCAGAAGCCAGATTGAAAGCAGAGCAAACTGCTGTAGAAAGAGCAACTACAGAGGCTCGAGAGTGTGCAATGGACAAAGTTAAGGTTGATAGAGCTGCATTTGAGTCCAGAGATCGATTAGTAAGATCTGTCACTGACAAATTTAGTGTTTCTTTCAGATATGGTAGGAGACAGGGCTCTTCATCCTCAAACTCTAGCTCCTTCACGCATTCCAAATATCCATATTCCTCAGTTTATGGTGCTTCCTCTTTTACTGAAAGATTAGAACGAGAAGGTGAATCAGCTCAGAGGTGTAGAGCTAGACTGGAGAGGTATTGCCGAACAGCTGAGCGTGCAGCAAAAGCTTTGGAAGAAAAGAACATGCGTGACCTTGTAGCCCAGAAGGAGCAAGCTGAGAGAAATAGATTAGCAGAAACCCTGGATACTGAAGTCAGGAGGTGGTCAAGTGGAAAAGAAGGAAATTTGCGTGCATTACTTTCAACCTTGCTATATATTCTTGGGCCTGATAGTGGCTGGCAGCCAATCCCACTCACGGACGTCATTACTTCTGCCGCTGTAAAGAAAACTTACAGGAAGGCCACCCTTTGTGTCCATCCTGACAAGTTGCAGCAACGTGGAGCAAGTATTCAACACAAATACATATGTGAGAAAGTCTTTGATCTCCTAAAGGAAGCTTGGAACAAATTCAACTCAGAAGAGCGATAG
>Glyma16g25150.2 sequence type=predicted peptide gene model=Glyma16g25150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high IGKGVVENLKDNRGKGASEMSQGEAEHSGKVACTATNFNGDEHSFSCEQTCTEKTKTAPQMKFDAQSGERKIGERGNTKQHLNVAINPEESRDQMSSSQGDYRRNTIADEPAAVQEVGNIQKPSQRAHVSHSTKSKEKNLNETSASVEKDMEEEMERERERQKDKMAVDSAMLEAEREKEKEKDRMAVDKATLEARDRTYVDARERAERAAFEREPTEARQRALAEARERLEKACTKARDKTYADKAAAEARLKAEQTAVERATTEARECAMDKVKVDRAAFESRDRLVRSVTDKFSVSFRYGRRQGSSSSNSSSFTHSKYPYSSVYGASSFTERLEREGESAQRCRARLERYCRTAERAAKALEEKNMRDLVAQKEQAERNRLAETLDTEVRRWSSGKEGNLRALLSTLLYILGPDSGWQPIPLTDVITSAAVKKTYRKATLCVHPDKLQQRGASIQHKYICEKVFDLLKEAWNKFNSEER*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
