Glyma16g24940 - SoyBase

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Report for Sequence Feature Glyma16g24940

Feature Type:	gene_model
Chromosome:	Gm16
Start:	28927899
stop:	28933297
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g24940

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G17680	AT	Annotation by Michelle Graham. TAIR10: disease resistance protein (TIR-NBS-LRR class), putative \| chr5:5822999-5827153 FORWARD LENGTH=1294	SoyBase	E_val: 2.00E-139	ISS
GO:0006952	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response	SoyBase	N/A	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0043531	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ADP binding	SoyBase	N/A	ISS
PTHR11017	Panther	LEUCINE RICH REPEAT PROTEIN	JGI		ISS
PTHR11017:SF20	Panther	DISEASE RESISTANCE PROTEIN	JGI		ISS
PF00931	PFAM	NB-ARC domain	JGI		ISS
PF01582	PFAM	TIR domain	JGI		ISS
UniRef100_I1MNC5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MNC5_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q8W2C0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Functional candidate resistance protein KR1 n=1 Tax=Glycine max RepID=Q8W2C0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma16g24940

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma16g24940 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g135500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g24940

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma16g24940

Limit To All Plant Sequences

>Glyma16g24940.1   sequence type=CDS   gene model=Glyma16g24940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGTGCGATCATTCTCCTACGATGTGTTCCTTAGCTTCCGAGGGGAAGATACTCGTTATAGTTTCACTGGCAATCTCTACAATGTCCTTCGGGAAAGGGGAATTCACACCTTCATTGATGACGACGAGTTCCAGAAAGGGGACCAAATCACGTCAGCACTTGAGGAAGCAATTGAGAAGTCCAAGATTTTCATCATCGTGCTCTCTGAAAACTACGCATCTTCCTCCTTTTGCTTAAACGAACTCACTCACATCCTTAACTTTACTAAGGGGAAGAATGATCTGTTGGTTTTGCCAGTTTTTTATATAGTGGATCCTTCAGATGTCCGACACCACAGAGGTAGTTTTGGAGAAGCACTGGCAAATCATGAAAAGAAGTTGAACTCTGATAACATGGAGAATCTTGAGACCTGGAAAATGGCTCTGCACCAAGTTTCTAACATTTCTGGCCATCATTTCCAACATGATGGGAACAAATATGAATACAAGTTTATTAAGGAGATAGTTGAATCAGTGTCTAGCAAGTTTAATCATGCTCTTTTACAAGTTCCTGATGTCTTGGTTGGGCTAGAGTCACCCGTGCTAGAAGTAAAGTCGCTTCTGGATGTTGGATCTGATGATGTCGTTCACATGGTGGGGATCCATGGACTCGGTGGAGTGGGTAAAACAACACTTGCCGTTGCAGTCTATAATTCCATTGCTGGCCATTTTGAAGCTTCTTGCTTTCTTGAAAATGTGAGAGAAACTTCCAACAAAAAGGGGTTACAACATCTCCAAAGCATCCTTCTTTCTAAAACAGTTGGAGAGAAGAAAATTAAGTTAACAAATTGGAGAGAAGGAATTCCCATAATAAAGCATAAGCTCAAGCAAAAAAAGGTTCTTTTGATTCTAGATGATGTTGATGAACATAAACACTTACAAGCAATTATTGGCAGCCCTGATTGGTTTGGTTGTGGTAGTAGAGTCATCATCACCACTCGAAACGAACATTTGTTAGCGCTACACAATGTTAAAATAACATATAAGGTGAGAGAGTTGAATGAGAAACATGCTCTTCAATTACTTACTCAGAAGGCTTTTGAGTTGGAAAAAGAAGTTGATTCAAGTTACAATGATATTTTGAATCGAGCGCTAATTTATGCTTCAGGCCTTCCGTTGGCTTTAGAAGTAATAGGTTCCAACTTATTTGGAAAAAGTATAAAAGAATGGGAATCTGCTCTAAATGGATATGAAAGAATTCCTGATAAAAGTATCTATATGATACTTAAAGTAAGCTATGATGCTTTGAATGAAGATGAGAAAAGTATTTTTCTTGATATTGCTTGTTGCTTCAAAGATTATGAATTGGGAGAGCTCCAAGATATACTTTATGCTCATTATGGTCGTTGCATGAAATATCATATTGGGGTGTTGGTTAAAAAATCTCTTATAAACATTCATGGGTCATGGGATTATAAGGTCATGAGATTGCATGACTTGATAGAAGACATGGGTAAAGAAATTGTCCGAAGAGAATCACCAACAGAGCCTGGGAAACGTAGCAGGTTATGGTCCCATGAGGATATAAATCAGGTTTTACAAGAAAATAAGGGGACTAGTAAGATTGAAATCATATGTATGAATTTTTCCTCATTTGGAGAAGAAGTTGAATGGGATGGAGATGCCTTCAAGAAGATGAAAAATCTCAAAACACTTATTATCAAAAGTGATTGTTTTACCAAAGGTCCCAAATATCTTCCTAATACTTTAAGGGTATTGGAATGGAAGAGATGTCCTTCACGGGATTGGCCACATAATTTTAACCCAAAGCAACTTGCTATATGCAAGTTACGCCATAGTAGCTTTACGTCACTAGAGTTGGCCCCATTATTTGAAAAGAGGTTCGTGAATTTGACAATTTTAAACTTGGACAAGTGTGATAGTTTAACAGAGATACCAGATGTATCTTGTCTCTCAAAATTGGAAAAATTGTCATTTGCAAGGTGTCGGAATTTGTTTACAATTCACTATTCAGTTGGTTTATTGGAAAAGCTTAAGATCTTGTATGCTGGAGGTTGCCCAGAGCTTAAGAGTTTTCCACCATTGAAGTTGACCTCTCTTGAACAGTTTGAACTTTCGGGTTGTCACAATCTCGAGAGTTTTCCTGAAATATTAGGAAAAATGGAAAATATAACAGTACTTGACTTGGATGAATGTCGCATAAAAGAATTCCGACCTTCATTTCGAAATCTTACTCGGCTTCAAGAGTTATATCTGGGACAGGAAACTTACCGGTTAAGAGGCTTTGATGCTGCCACCTTCATTTCAAACATTTGCATGATGCCAGAACTAGCTCGGGTTGAAGCTACCCAATTGCAATGGAGGCTATTGCCTGACGATGTTTTGAAATTGAGCTCGGTCGTGTGTTCAAGCATGCAGCATCTTGAATTCATAGGCTGCGACCTGTCAGATGAGCTTCTTTGGCTATTTCTCTCATGTTTTGTAAATGTGAAGAATTTAAACCTGTCAGCGAGTAAATTCACAGTTATTCCCGAATGCATCAAAGACTGCCGCTTTTTAACTACCCTTACTTTGGATTATTGCGATCGTCTTCAAGAAATTAGAGGGATTCCTCCAAACTTGAAATATTTCTCTGCATTAGGATGCCTAGCCTTGACTTCCTCAAGTATAAGCATGTTACAGAATCAGGAACTACATGAGGTTGGAGACACCTTCTTTATTTTGCCAAGTGGAAAGATTCCAGGGTGGTTTGAGTGCCATAGTCGGGGACCGTCAATTTTTTTCTGGTTCCGTAACAAACTCCCAGCCATAGTTGTTTGCTTTGTTAAGGAAGATTTTTTGAACTTTACCTCAGATCTAGTTTTGAGCGTGATCATTAATGGACATGAACATCAACATAAACCTTTGTTTGGTGGGTTTTTCTTCGAATCACCTTGTACAGCTCTTTTTCATCTTCAAATGAAAGATAATTTAGATGAAGCACTATTAGAGAATGAATGGAACCTTGCAGAGATTGTATATGGAGATTTGTGTGATGAAAACGGAATCCATGTATTGAAAAAGCAAAGTAGCGTGGACGATATTCGATTCATTGATCCTTGTAGAAAAAAAAAATTAAATGATGATCTCATTAGTTCATAA

Predicted protein sequences of Glyma16g24940

Limit To All Plant Sequences

>Glyma16g24940.1   sequence type=predicted peptide   gene model=Glyma16g24940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVRSFSYDVFLSFRGEDTRYSFTGNLYNVLRERGIHTFIDDDEFQKGDQITSALEEAIEKSKIFIIVLSENYASSSFCLNELTHILNFTKGKNDLLVLPVFYIVDPSDVRHHRGSFGEALANHEKKLNSDNMENLETWKMALHQVSNISGHHFQHDGNKYEYKFIKEIVESVSSKFNHALLQVPDVLVGLESPVLEVKSLLDVGSDDVVHMVGIHGLGGVGKTTLAVAVYNSIAGHFEASCFLENVRETSNKKGLQHLQSILLSKTVGEKKIKLTNWREGIPIIKHKLKQKKVLLILDDVDEHKHLQAIIGSPDWFGCGSRVIITTRNEHLLALHNVKITYKVRELNEKHALQLLTQKAFELEKEVDSSYNDILNRALIYASGLPLALEVIGSNLFGKSIKEWESALNGYERIPDKSIYMILKVSYDALNEDEKSIFLDIACCFKDYELGELQDILYAHYGRCMKYHIGVLVKKSLINIHGSWDYKVMRLHDLIEDMGKEIVRRESPTEPGKRSRLWSHEDINQVLQENKGTSKIEIICMNFSSFGEEVEWDGDAFKKMKNLKTLIIKSDCFTKGPKYLPNTLRVLEWKRCPSRDWPHNFNPKQLAICKLRHSSFTSLELAPLFEKRFVNLTILNLDKCDSLTEIPDVSCLSKLEKLSFARCRNLFTIHYSVGLLEKLKILYAGGCPELKSFPPLKLTSLEQFELSGCHNLESFPEILGKMENITVLDLDECRIKEFRPSFRNLTRLQELYLGQETYRLRGFDAATFISNICMMPELARVEATQLQWRLLPDDVLKLSSVVCSSMQHLEFIGCDLSDELLWLFLSCFVNVKNLNLSASKFTVIPECIKDCRFLTTLTLDYCDRLQEIRGIPPNLKYFSALGCLALTSSSISMLQNQELHEVGDTFFILPSGKIPGWFECHSRGPSIFFWFRNKLPAIVVCFVKEDFLNFTSDLVLSVIINGHEHQHKPLFGGFFFESPCTALFHLQMKDNLDEALLENEWNLAEIVYGDLCDENGIHVLKKQSSVDDIRFIDPCRKKKLNDDLISS*

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