SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G66470 | AT | Annotation by Michelle Graham. TAIR10: RNA binding;GTP binding | chr5:26541986-26544302 REVERSE LENGTH=427 | SoyBase | E_val: 0 | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0016226 | GO-bp | Annotation by Michelle Graham. GO Biological Process: iron-sulfur cluster assembly | SoyBase | N/A | ISS |
| GO:0019288 | GO-bp | Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway | SoyBase | N/A | ISS |
| GO:0042793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transcription from plastid promoter | SoyBase | N/A | ISS |
| GO:0045036 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to chloroplast | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| GO:0005525 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GTP binding | SoyBase | N/A | ISS |
| KOG1423 | KOG | Ras-like GTPase ERA | JGI | ISS | |
| PTHR11649 | Panther | MSS1/TRME-RELATED GTP-BINDING PROTEIN | JGI | ISS | |
| PTHR11649:SF3 | Panther | GTP-BINDING PROTEIN ERA-RELATED | JGI | ISS | |
| PF01926 | PFAM | GTPase of unknown function | JGI | ISS | |
| PF07650 | PFAM | KH domain | JGI | ISS | |
| UniRef100_B9S6C9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: GTP-binding protein era, putative n=1 Tax=Ricinus communis RepID=B9S6C9_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MNB9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MNB9_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma16g24870 not represented in the dataset |
Glyma16g24870 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g06100 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g134900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g24870.3 sequence type=transcript gene model=Glyma16g24870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTCGCCACAGGAATTTCGTTAATAATTTATTTATCCTATAACTTGGATAAAAAAAAGAAGCAGCGCAGCGGCATTGGCAATGGAGAAGCTCGCTTCTTCTTCTACTGCAACTGTTGTTCCCACTCAACACTTCCTTTTTCAATTTCACCAACATTCTCTTTTCTTCTTCCCCAAAACTGCGTTTTCCACCTTCCACCGGAACCGCACCGAACCGCTCTCACTGCCATGTTGCAAAAGCAGACACCGTCGCCTAGAAGCATTATCCAGCAAACAGGATCAACTCTGGGTCAGCGAAGAAGAATTGGAGCTAGAATTGGAAGAAGGAGAAGATTCGTATTTGGACGGTGATGATGACGACGACGACTCGTCGTTTTTGTCGCTCAGCGACAAGCCCGACAGGAACATGGCCATGCTCGACGATTACGAGGGCGAGGAGCTCGACTTTGATTACGGTCCCGACCACCGAAGCGGGTATGTGGCGTTACTTGGGAAGCCAAATGTTGGGAAGAGTACACTGGCGAACCAAATGCTAGGGCAAAAGTTGTCAATAGTTACAGATAAACCTCAAACGACGAGGCATCGGATTCTGTGTATATGTTCTGGCACGGATTATCAGATGATACTTTATGACACACCTGGTGTTCTACAGAAGGAAATGCACTTGTTAGACTCAATGATGATGAAAAACGTTCGCAGTGCTGCAGTTAATGCTGACTGTGTATTGGTTCTTGTCGATGCACGTAAAACTCCTGAAAAAATTGATGGACTGTTGGAAGAAGGCATAGGAGACCTCAAAGATAAGCCTCCCACTCTACTGATTCTAAACAAGAAGGACCTTGTTAAACCTGGTGAACTTGCAAAGAAACTTGAGTGGTATGAGAAATTTACTGAAGTTGATGAGGTTATACCTGTTAGTGCCAAATATGGTCAGGGGGTTGAAGATGTCAAGGACTGGATACTGTCAAAGCTTCCCAATGGACCAGCTTATTATCCAAAGGATATTGTCAGTGAGCATCCAGAGAGATTTTTTGTAGCTGAAATTGTTAGAGAAAAGATTTTTATGCAGTATCGAAATGAAATTCCATATGCATGTCAGGTAAATGTTGTAAACTATAAAGCTCGGCCAAATGCAAAAGAATACATACAAGTAGAGATTTTGGTTGAGAAAAACACTCAGAAGATTATCCTTATTGGAAGAGAAGGAAAGGCTTTGAAACTGCTTGCAACAGCTGCCCGCCTTGATGTTGAAGATTTTTTACAGAAGAAAGTTTATCTTGAGATTGAAGTGAAGGTTAGAGCAAATTGGCGACAAGATGAAGGGCTTCTTAATCACTATGGTTATGGGGGCCAAATACGTGTTATATAATGTGAAGATGGAAAAAAAAAAAGAAAAAACAAATCATTAGGCATCTGGTATAAAATATGTAAGTGAAAATCGCTTGCCTCAGTTGCCATCAAAACTTCTATTGTATATGATTTTGGCTGACACTATCCCTCTTCCATTCTTGTAGGCATGTCAATCCTTATTTGGTAAATGTGAATGAAAAGATATGTTGAATGGAAAATTTAAGATATGGAAGCAATTTTCACATTAGCTTCTCTTTCCTTTCCCATCATATTTAATTACATTCATTTTCGTTTACGGTTGAACTGTAGGAATGAGAGTAATGAAGTAATGTTACTTATACATGAATTTATTACCCCATCTATTTCAGTCATAATATTTTGAAGGAAAAGCAAATTTTAGGCTTCGTCTATGTATTTTTTGGAAAGTAGGAACTCTAGTAGTTCATGTATAAACATAGTGTATGTAAACTGAGTTACTCTGTTGAAATTGTATGATAATCGTGCAGCCACTTTCCGGAA
>Glyma16g24870.2 sequence type=CDS gene model=Glyma16g24870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGAAGCTCGCTTCTTCTTCTACTGCAACTGTTGTTCCCACTCAACACTTCCTTTTTCAATTTCACCAACATTCTCTTTTCTTCTTCCCCAAAACTGCGTTTTCCACCTTCCACCGGAACCGCACCGAACCGCTCTCACTGCCATGTTGCAAAAGCAGACACCGTCGCCTAGAAGCATTATCCAGCAAACAGGATCAACTCTGGGTCAGCGAAGAAGAATTGGAGCTAGAATTGGAAGAAGGAGAAGATTCGTATTTGGACGGTGATGATGACGACGACGACTCGTCGTTTTTGTCGCTCAGCGACAAGCCCGACAGGAACATGGCCATGCTCGACGATTACGAGGGCGAGGAGCTCGACTTTGATTACGGTCCCGACCACCGAAGCGGGTATGTGGCGTTACTTGGGAAGCCAAATGTTGGGAAGAGTACACTGGCGAACCAAATGCTAGGGCAAAAGTTGTCAATAGTTACAGATAAACCTCAAACGACGAGGCATCGGATTCTGTGTATATGTTCTGGCACGGATTATCAGATGATACTTTATGACACACCTGGTGTTCTACAGAAGGAAATGCACTTGTTAGACTCAATGATGATGAAAAACGTTCGCAGTGCTGCAGTTAATGCTGACTGTGTATTGGTTCTTGTCGATGCACGTAAAACTCCTGAAAAAATTGATGGACTGTTGGAAGAAGGCATAGGAGACCTCAAAGATAAGCCTCCCACTCTACTGATTCTAAACAAGAAGGACCTTGTTAAACCTGGTGAACTTGCAAAGAAACTTGAGTGGTATGAGAAATTTACTGAAGTTGATGAGGTTATACCTGTTAGTGCCAAATATGGTCAGGGGGTTGAAGATGTCAAGGACTGGATACTGTCAAAGCTTCCCAATGGACCAGCTTATTATCCAAAGGATATTGTCAGTGAGCATCCAGAGAGATTTTTTGTAGCTGAAATTGTTAGAGAAAAGATTTTTATGCAGTATCGAAATGAAATTCCATATGCATGTCAGGTAAATGTTGTAAACTATAAAGCTCGGCCAAATGCAAAAGAATACATACAAGTAGAGATTTTGGTTGAGAAAAACACTCAGAAGATTATCCTTATTGGAAGAGAAGGAAAGGCTTTGAAACTGCTTGCAACAGCTGCCCGCCTTGATGTTGAAGATTTTTTACAGAAGAAAGTTTATCTTGAGATTGAAGTGAAGGTTAGAGCAAATTGGCGACAAGATGAAGGGCTTCTTAATCACTATGGTTATGGGGGCCAAATACGTGTTATATAA >Glyma16g24870.3 sequence type=CDS gene model=Glyma16g24870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGAAGCTCGCTTCTTCTTCTACTGCAACTGTTGTTCCCACTCAACACTTCCTTTTTCAATTTCACCAACATTCTCTTTTCTTCTTCCCCAAAACTGCGTTTTCCACCTTCCACCGGAACCGCACCGAACCGCTCTCACTGCCATGTTGCAAAAGCAGACACCGTCGCCTAGAAGCATTATCCAGCAAACAGGATCAACTCTGGGTCAGCGAAGAAGAATTGGAGCTAGAATTGGAAGAAGGAGAAGATTCGTATTTGGACGGTGATGATGACGACGACGACTCGTCGTTTTTGTCGCTCAGCGACAAGCCCGACAGGAACATGGCCATGCTCGACGATTACGAGGGCGAGGAGCTCGACTTTGATTACGGTCCCGACCACCGAAGCGGGTATGTGGCGTTACTTGGGAAGCCAAATGTTGGGAAGAGTACACTGGCGAACCAAATGCTAGGGCAAAAGTTGTCAATAGTTACAGATAAACCTCAAACGACGAGGCATCGGATTCTGTGTATATGTTCTGGCACGGATTATCAGATGATACTTTATGACACACCTGGTGTTCTACAGAAGGAAATGCACTTGTTAGACTCAATGATGATGAAAAACGTTCGCAGTGCTGCAGTTAATGCTGACTGTGTATTGGTTCTTGTCGATGCACGTAAAACTCCTGAAAAAATTGATGGACTGTTGGAAGAAGGCATAGGAGACCTCAAAGATAAGCCTCCCACTCTACTGATTCTAAACAAGAAGGACCTTGTTAAACCTGGTGAACTTGCAAAGAAACTTGAGTGGTATGAGAAATTTACTGAAGTTGATGAGGTTATACCTGTTAGTGCCAAATATGGTCAGGGGGTTGAAGATGTCAAGGACTGGATACTGTCAAAGCTTCCCAATGGACCAGCTTATTATCCAAAGGATATTGTCAGTGAGCATCCAGAGAGATTTTTTGTAGCTGAAATTGTTAGAGAAAAGATTTTTATGCAGTATCGAAATGAAATTCCATATGCATGTCAGGTAAATGTTGTAAACTATAAAGCTCGGCCAAATGCAAAAGAATACATACAAGTAGAGATTTTGGTTGAGAAAAACACTCAGAAGATTATCCTTATTGGAAGAGAAGGAAAGGCTTTGAAACTGCTTGCAACAGCTGCCCGCCTTGATGTTGAAGATTTTTTACAGAAGAAAGTTTATCTTGAGATTGAAGTGAAGGTTAGAGCAAATTGGCGACAAGATGAAGGGCTTCTTAATCACTATGGTTATGGGGGCCAAATACGTGTTATATAA
>Glyma16g24870.2 sequence type=predicted peptide gene model=Glyma16g24870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEKLASSSTATVVPTQHFLFQFHQHSLFFFPKTAFSTFHRNRTEPLSLPCCKSRHRRLEALSSKQDQLWVSEEELELELEEGEDSYLDGDDDDDDSSFLSLSDKPDRNMAMLDDYEGEELDFDYGPDHRSGYVALLGKPNVGKSTLANQMLGQKLSIVTDKPQTTRHRILCICSGTDYQMILYDTPGVLQKEMHLLDSMMMKNVRSAAVNADCVLVLVDARKTPEKIDGLLEEGIGDLKDKPPTLLILNKKDLVKPGELAKKLEWYEKFTEVDEVIPVSAKYGQGVEDVKDWILSKLPNGPAYYPKDIVSEHPERFFVAEIVREKIFMQYRNEIPYACQVNVVNYKARPNAKEYIQVEILVEKNTQKIILIGREGKALKLLATAARLDVEDFLQKKVYLEIEVKVRANWRQDEGLLNHYGYGGQIRVI* >Glyma16g24870.3 sequence type=predicted peptide gene model=Glyma16g24870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEKLASSSTATVVPTQHFLFQFHQHSLFFFPKTAFSTFHRNRTEPLSLPCCKSRHRRLEALSSKQDQLWVSEEELELELEEGEDSYLDGDDDDDDSSFLSLSDKPDRNMAMLDDYEGEELDFDYGPDHRSGYVALLGKPNVGKSTLANQMLGQKLSIVTDKPQTTRHRILCICSGTDYQMILYDTPGVLQKEMHLLDSMMMKNVRSAAVNADCVLVLVDARKTPEKIDGLLEEGIGDLKDKPPTLLILNKKDLVKPGELAKKLEWYEKFTEVDEVIPVSAKYGQGVEDVKDWILSKLPNGPAYYPKDIVSEHPERFFVAEIVREKIFMQYRNEIPYACQVNVVNYKARPNAKEYIQVEILVEKNTQKIILIGREGKALKLLATAARLDVEDFLQKKVYLEIEVKVRANWRQDEGLLNHYGYGGQIRVI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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