Glyma16g24740 - SoyBase

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Report for Sequence Feature Glyma16g24740

Feature Type:	gene_model
Chromosome:	Gm16
Start:	28715328
stop:	28720814
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g24740

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G11480	AT	Annotation by Michelle Graham. TAIR10: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein \| chr3:3614544-3617137 FORWARD LENGTH=379	SoyBase	E_val: 4.00E-99	ISS
GO:0006952	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response	SoyBase	N/A	ISS
GO:0009611	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to wounding	SoyBase	N/A	ISS
GO:0009620	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to fungus	SoyBase	N/A	ISS
GO:0009695	GO-bp	Annotation by Michelle Graham. GO Biological Process: jasmonic acid biosynthetic process	SoyBase	N/A	ISS
GO:0009753	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus	SoyBase	N/A	ISS
GO:0051707	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to other organism	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0008168	GO-mf	Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity	SoyBase	N/A	ISS
GO:0008757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: S-adenosylmethionine-dependent methyltransferase activity	SoyBase	N/A	ISS
GO:0052624	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 2-phytyl-1,4-naphthoquinone methyltransferase activity	SoyBase	N/A	ISS
GO:0080150	GO-mf	Annotation by Michelle Graham. GO Molecular Function: S-adenosyl-L-methionine:benzoic acid carboxyl methyl transferase activity	SoyBase	N/A	ISS
PF03492	PFAM	SAM dependent carboxyl methyltransferase	JGI		ISS
UniRef100_B5A7G5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Salicylic acid methyl transferase-like protein n=1 Tax=Glycine max RepID=B5A7G5_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_UPI000233F1CA	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233F1CA related cluster n=1 Tax=unknown RepID=UPI000233F1CA	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma16g24740

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma16g24740 not represented in the dataset	Glyma16g24740 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma16g24740 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g134000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g24740

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma16g24740

Limit To All Plant Sequences

>Glyma16g24740.3   sequence type=transcript   gene model=Glyma16g24740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AACCACTATTGGATCAAATATCAATAGCTTCACATGAGATTTTTTGGGCAATTGAAGATGGATATGTGGCCGCGAAAAATGTTAATTTATGTGAAGTTATATGAAAACAACTTTTTCTTGTTAAAAAAGGGTTTGCACATCTATATATATATAGGTGTGGTATGAGGTTCGATCAAACGCATAGAAGCACAAAAGTAAAAAAAAAAAAAAAAAAACAGAGAAAGAGTGAAGTAGAAATAAAACCAAGGAAATTAAGGATAATGGAAGTAGCAAAGGTACTGCACATGAACGGTGGCGTTGGAGACGCAAGCTATGCAAACAACTCCTTTGTTCAGCAAAAGTTGATTTGTTTGACAAAGCCCTTAAGAGAAGAAGCCATAAAAAGCCTCTATTGCGGCACACTCCCCAGAAGGTTGGCAATGGCAGATTTGGGTTGCTCTTCTGGGCAACATGCTTTAATTGTCGTGTCAGACTTCATCAAAACTGTGGAGAAGCTTTGCCTAGAATTGAACCATAAATCTCCGGAATACAAGGTTTTTTTTAACGATCTTCCTGGGAATGACTTCAACAACATATTTAAGTCCCTTGACAGCTTCAAACAGAAGTTGTGTGAAGAAATGGAAAGTGGGATTGGTCCATGCTACTTCTTTGGTGCTCCAGGTTCTTTCTATGGCAGGATTTTCTCAAACCAAAGTGTGCATTTTATCCATTCCTCTTATAGCCTTCAATGGCTATCTAAGTGTCGTGCAGAGGAACTAGTTGAAGGAGGTCGAATGATTTTGACAATTATGGGAAGAAGAAGTGATGATCCATCTAGCAAAGATGGTTGCTACATTTGGGAAATTATGGCTACGGCTCTTAATGATATGGTATTGCAGGGAATAATAAAGGAAGAGCAATTGGATACTTTTAACATCCCTTTCTACACTCCATCCCCATCTGAAGTGAAATTGGAAGTTCTTAAAGAAGGTTCATTTGCCATTAATTGTTTAGAGGTGTCTGTAGTGCACTGGAGCGCTTGGGATGAATGGAGTGTTCTTGACTTTGAATCTGAAAGCGGATACAATTTGACACAGAGCATGAGGGCTGTGGCAGAATCTATGCTGGTTAGCCACTTTGGTGAAGCTATCATTGATGAGCTTTTCAGCCGTTACCAAGAAATCTTGGCTGATCGTATGTCCAAGGAGAAAACTAAGTTCATCAATGTTACCATATTATTGACTAGAAAACCATAAGCAAGAAGTTTGCATCTAAAGTTTCTCAAAAGGTTTGTCGTTGTAATTATTGTGACTGTTTGCTTGATTTGTTCTTCTTTTTCTAGCAAATTATAACTACGAGTATTCTGTTGTACCTTTGGTAGTAGAGCTTTCTTTTATATATTTTCTCCATTCTGTTATAAAATATTTTATTACGTGAAATT

Coding sequences of Glyma16g24740

Limit To All Plant Sequences

>Glyma16g24740.2   sequence type=CDS   gene model=Glyma16g24740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGTTCGATCAAACGCATAGAAGCACAAAAGTAAAAAAAAAAAAAAAAAAACAGAGAAAGAGTGAAGTAGAAATAAAACCAAGGAAATTAAGGATAATGGAAGTAGCAAAGGTACTGCACATGAACGGTGGCGTTGGAGACGCAAGCTATGCAAACAACTCCTTTGTTCAGCAAAAGTTGATTTGTTTGACAAAGCCCTTAAGAGAAGAAGCCATAAAAAGCCTCTATTGCGGCACACTCCCCAGAAGGTTGGCAATGGCAGATTTGGGTTGCTCTTCTGGGCAACATGCTTTAATTGTCGTGTCAGACTTCATCAAAACTGTGGAGAAGCTTTGCCTAGAATTGAACCATAAATCTCCGGAATACAAGGTTTTTTTTAACGATCTTCCTGGGAATGACTTCAACAACATATTTAAGTCCCTTGACAGCTTCAAACAGAAGTTGTGTGAAGAAATGGAAAGTGGGATTGGTCCATGCTACTTCTTTGGTGCTCCAGGTTCTTTCTATGGCAGGATTTTCTCAAACCAAAGTGTGCATTTTATCCATTCCTCTTATAGCCTTCAATGGCTATCTAAGGTTCCCGAGTGTATAGACAACAATAAGAGCAATATTTACCTAGGCAGAACAAGCCCATCAAATGTTGTGAGAGCTTACTATGAGCAATATCAAAGAGATTTCTCTCTTTTTCTCAAGTGTCGTGCAGAGGAACTAGTTGAAGGAGGTCGAATGATTTTGACAATTATGGGAAGAAGAAGTGATGATCCATCTAGCAAAGATGGTTGCTACATTTGGGAAATTATGGCTACGGCTCTTAATGATATGGTATTGCAGGGAATAATAAAGGAAGAGCAATTGGATACTTTTAACATCCCTTTCTACACTCCATCCCCATCTGAAGTGAAATTGGAAGTTCTTAAAGAAGGTTCATTTGCCATTAATTGTTTAGAGGTGTCTGTAGTGCACTGGAGCGCTTGGGATGAATGGAGTGTTCTTGACTTTGAATCTGAAAGCGGATACAATTTGACACAGAGCATGAGGGCTGTGGCAGAATCTATGCTGGTTAGCCACTTTGGTGAAGCTATCATTGATGAGCTTTTCAGCCGTTACCAAGAAATCTTGGCTGATCGTATGTCCAAGGAGAAAACTAAGTTCATCAATGTTACCATATTATTGACTAGAAAACCATAA

>Glyma16g24740.3   sequence type=CDS   gene model=Glyma16g24740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGTTCGATCAAACGCATAGAAGCACAAAAGTAAAAAAAAAAAAAAAAAAACAGAGAAAGAGTGAAGTAGAAATAAAACCAAGGAAATTAAGGATAATGGAAGTAGCAAAGGTACTGCACATGAACGGTGGCGTTGGAGACGCAAGCTATGCAAACAACTCCTTTGTTCAGCAAAAGTTGATTTGTTTGACAAAGCCCTTAAGAGAAGAAGCCATAAAAAGCCTCTATTGCGGCACACTCCCCAGAAGGTTGGCAATGGCAGATTTGGGTTGCTCTTCTGGGCAACATGCTTTAATTGTCGTGTCAGACTTCATCAAAACTGTGGAGAAGCTTTGCCTAGAATTGAACCATAAATCTCCGGAATACAAGGTTTTTTTTAACGATCTTCCTGGGAATGACTTCAACAACATATTTAAGTCCCTTGACAGCTTCAAACAGAAGTTGTGTGAAGAAATGGAAAGTGGGATTGGTCCATGCTACTTCTTTGGTGCTCCAGGTTCTTTCTATGGCAGGATTTTCTCAAACCAAAGTGTGCATTTTATCCATTCCTCTTATAGCCTTCAATGGCTATCTAAGTGTCGTGCAGAGGAACTAGTTGAAGGAGGTCGAATGATTTTGACAATTATGGGAAGAAGAAGTGATGATCCATCTAGCAAAGATGGTTGCTACATTTGGGAAATTATGGCTACGGCTCTTAATGATATGGTATTGCAGGGAATAATAAAGGAAGAGCAATTGGATACTTTTAACATCCCTTTCTACACTCCATCCCCATCTGAAGTGAAATTGGAAGTTCTTAAAGAAGGTTCATTTGCCATTAATTGTTTAGAGGTGTCTGTAGTGCACTGGAGCGCTTGGGATGAATGGAGTGTTCTTGACTTTGAATCTGAAAGCGGATACAATTTGACACAGAGCATGAGGGCTGTGGCAGAATCTATGCTGGTTAGCCACTTTGGTGAAGCTATCATTGATGAGCTTTTCAGCCGTTACCAAGAAATCTTGGCTGATCGTATGTCCAAGGAGAAAACTAAGTTCATCAATGTTACCATATTATTGACTAGAAAACCATAA

Predicted protein sequences of Glyma16g24740

Limit To All Plant Sequences

>Glyma16g24740.2   sequence type=predicted peptide   gene model=Glyma16g24740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRFDQTHRSTKVKKKKKKQRKSEVEIKPRKLRIMEVAKVLHMNGGVGDASYANNSFVQQKLICLTKPLREEAIKSLYCGTLPRRLAMADLGCSSGQHALIVVSDFIKTVEKLCLELNHKSPEYKVFFNDLPGNDFNNIFKSLDSFKQKLCEEMESGIGPCYFFGAPGSFYGRIFSNQSVHFIHSSYSLQWLSKVPECIDNNKSNIYLGRTSPSNVVRAYYEQYQRDFSLFLKCRAEELVEGGRMILTIMGRRSDDPSSKDGCYIWEIMATALNDMVLQGIIKEEQLDTFNIPFYTPSPSEVKLEVLKEGSFAINCLEVSVVHWSAWDEWSVLDFESESGYNLTQSMRAVAESMLVSHFGEAIIDELFSRYQEILADRMSKEKTKFINVTILLTRKP*

>Glyma16g24740.3   sequence type=predicted peptide   gene model=Glyma16g24740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRFDQTHRSTKVKKKKKKQRKSEVEIKPRKLRIMEVAKVLHMNGGVGDASYANNSFVQQKLICLTKPLREEAIKSLYCGTLPRRLAMADLGCSSGQHALIVVSDFIKTVEKLCLELNHKSPEYKVFFNDLPGNDFNNIFKSLDSFKQKLCEEMESGIGPCYFFGAPGSFYGRIFSNQSVHFIHSSYSLQWLSKCRAEELVEGGRMILTIMGRRSDDPSSKDGCYIWEIMATALNDMVLQGIIKEEQLDTFNIPFYTPSPSEVKLEVLKEGSFAINCLEVSVVHWSAWDEWSVLDFESESGYNLTQSMRAVAESMLVSHFGEAIIDELFSRYQEILADRMSKEKTKFINVTILLTRKP*

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