SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G51000 | AT | Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein | chr3:18945258-18946499 REVERSE LENGTH=323 | SoyBase | E_val: 7.00E-157 | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004301 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: epoxide hydrolase activity | SoyBase | N/A | ISS |
| KOG4178 | KOG | Soluble epoxide hydrolase | JGI | ISS | |
| PTHR10992 | Panther | ALPHA/BETA HYDROLASE RELATED | JGI | ISS | |
| PTHR10992:SF279 | Panther | EPOXIDE HYDROLASE-RELATED | JGI | ISS | |
| PF00561 | PFAM | alpha/beta hydrolase fold | JGI | ISS | |
| PF12146 | PFAM | Putative lysophospholipase | JGI | ISS | |
| UniRef100_B9S689 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Epoxide hydrolase, putative n=1 Tax=Ricinus communis RepID=B9S689_RICCO | SoyBase | E_val: 1.00E-167 | ISS |
| UniRef100_C6TNC5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TNC5_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma16g24570 not represented in the dataset |
Glyma16g24570 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g05880 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g132500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g24570.2 sequence type=transcript gene model=Glyma16g24570 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TGTGCACAGTAGTACGGAATTTCCTGTCCTATTATCTAGAATAAACAAAAATGTTTCGGGGTTAGCAAGTCAAAGTTGTGCTCTGACCATACACCTTTGACATTAATAATCTTACAACCTGTTCCATCTTCGCTGTCCATCATTCTTAAGGAACATAACATCATCTGCTTCCACCTTCAACTTTGGTTAATTTGAACCATGGAGCACTTAGACATTGTGAGTGAAGTGAAGCATCAAAGAATCAAAACCAACGGGATATGGCTACACGTGGCAGAGAAAGGAACAGGTCCACTAGTTCTGCTGCTTCATGGCTTCCCAGAAACATGGTATGCCTGGCGCCACCAGATCAATTTCTTGGCCCATCATGGCTACCATGTGGTTGCACCTGATCTTAGAGGATATGGTGACTCTGATTCTCCTATTGACCCCAGTTCCTACACTATTCACCACCTTGTAGGTGACATCATAGGTTTCCTTGATCATTTTGGTCAACATCAGGAACCTGGTAGAGCAGAGAGGGCTTTTGCTAGATATGATTATTTGACAGTGATGAAGAAGTTTTTGCTGATAACACGGACAGATTTTCTAGCATCTCCACCGGGCATGGAGCTTGTTGATTTCTTGCCAACACCTTCGGTTGTGCCATCATGGATAACCGAGGAAGAACTCATGGTCTTTGCAGACAAATTCCAAGAGTCTGGTTTCACTGGTCCACTCAATTATTACCGTGCAATGGACTTAAACTGGGAGCTTCTTGCACCATGGCAAGGATCAAAGCTAACAGTTCCAACGAAGTTCGTAGCAGGAGACAAAGACATCGGTTTTGAAACAGCGGGTACAAAGGCTTTTGTGGAAAGTGATATTTTCAAGAGCCTAGTTCCCAACCTTGAAGTGGTTATACTAGACGGCCACCATTTTATTCATCAAGAAAAAGCCCAACAAGTTTCACATGAAATCCTTTCCTTCATCCGTAAATTATCCCCCAATGCTTCCATATAATATTAGCTATTTATAGAGAATTGTTGATTGTTAATGTAAACCCCTTTGTCTAGGTTGTGACAAGGCAGTGTAGTTTTTACTTACTAGTCTGATTTTCACAAATTATTTAAATTAGTGATTCTTCATTTGCTTTTATTGATATTATAATTTAAAGATTCAATGAACACAAGCTATTCTGTACAAAAATCCT
>Glyma16g24570.1 sequence type=CDS gene model=Glyma16g24570 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGCACTTAGACATTGTGAGTGAAGTGAAGCATCAAAGAATCAAAACCAACGGGATATGGCTACACGTGGCAGAGAAAGGAACAGGTCCACTAGTTCTGCTGCTTCATGGCTTCCCAGAAACATGGTATGCCTGGCGCCACCAGATCAATTTCTTGGCCCATCATGGCTACCATGTGGTTGCACCTGATCTTAGAGGATATGGTGACTCTGATTCTCCTATTGACCCCAGTTCCTACACTATTCACCACCTTGTAGGTGACATCATAGGTTTCCTTGATCATTTTGGTCAACATCAGGCATTTATTGTTGGATCTGATTGGGGAGCAGTCATTGGATGGCATCTGAGTCTGTTTAGGCCTGAAAGAGTCAAAGGATTTGTTTGTCTGGGTTTTCCTTACTACCCAAGATCTCCAACTGCTAAAACGGTTGAAACTATCAGGAAATTAATTGGAGATGAGAGTCATGTTTGCCAGTTCCAGGAACCTGGTAGAGCAGAGAGGGCTTTTGCTAGATATGATTATTTGACAGTGATGAAGAAGTTTTTGCTGATAACACGGACAGATTTTCTAGCATCTCCACCGGGCATGGAGCTTGTTGATTTCTTGCCAACACCTTCGGTTGTGCCATCATGGATAACCGAGGAAGAACTCATGGTCTTTGCAGACAAATTCCAAGAGTCTGGTTTCACTGGTCCACTCAATTATTACCGTGCAATGGACTTAAACTGGGAGCTTCTTGCACCATGGCAAGGATCAAAGCTAACAGTTCCAACGAAGTTCGTAGCAGGAGACAAAGACATCGGTTTTGAAACAGCGGGTACAAAGGCTTTTGTGGAAAGTGATATTTTCAAGAGCCTAGTTCCCAACCTTGAAGTGGTTATACTAGACGGCCACCATTTTATTCATCAAGAAAAAGCCCAACAAGTTTCACATGAAATCCTTTCCTTCATCCGTAAATTATCCCCCAATGCTTCCATATAA >Glyma16g24570.2 sequence type=CDS gene model=Glyma16g24570 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGCACTTAGACATTGTGAGTGAAGTGAAGCATCAAAGAATCAAAACCAACGGGATATGGCTACACGTGGCAGAGAAAGGAACAGGTCCACTAGTTCTGCTGCTTCATGGCTTCCCAGAAACATGGTATGCCTGGCGCCACCAGATCAATTTCTTGGCCCATCATGGCTACCATGTGGTTGCACCTGATCTTAGAGGATATGGTGACTCTGATTCTCCTATTGACCCCAGTTCCTACACTATTCACCACCTTGTAGGTGACATCATAGGTTTCCTTGATCATTTTGGTCAACATCAGGAACCTGGTAGAGCAGAGAGGGCTTTTGCTAGATATGATTATTTGACAGTGATGAAGAAGTTTTTGCTGATAACACGGACAGATTTTCTAGCATCTCCACCGGGCATGGAGCTTGTTGATTTCTTGCCAACACCTTCGGTTGTGCCATCATGGATAACCGAGGAAGAACTCATGGTCTTTGCAGACAAATTCCAAGAGTCTGGTTTCACTGGTCCACTCAATTATTACCGTGCAATGGACTTAAACTGGGAGCTTCTTGCACCATGGCAAGGATCAAAGCTAACAGTTCCAACGAAGTTCGTAGCAGGAGACAAAGACATCGGTTTTGAAACAGCGGGTACAAAGGCTTTTGTGGAAAGTGATATTTTCAAGAGCCTAGTTCCCAACCTTGAAGTGGTTATACTAGACGGCCACCATTTTATTCATCAAGAAAAAGCCCAACAAGTTTCACATGAAATCCTTTCCTTCATCCGTAAATTATCCCCCAATGCTTCCATATAA
>Glyma16g24570.1 sequence type=predicted peptide gene model=Glyma16g24570 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEHLDIVSEVKHQRIKTNGIWLHVAEKGTGPLVLLLHGFPETWYAWRHQINFLAHHGYHVVAPDLRGYGDSDSPIDPSSYTIHHLVGDIIGFLDHFGQHQAFIVGSDWGAVIGWHLSLFRPERVKGFVCLGFPYYPRSPTAKTVETIRKLIGDESHVCQFQEPGRAERAFARYDYLTVMKKFLLITRTDFLASPPGMELVDFLPTPSVVPSWITEEELMVFADKFQESGFTGPLNYYRAMDLNWELLAPWQGSKLTVPTKFVAGDKDIGFETAGTKAFVESDIFKSLVPNLEVVILDGHHFIHQEKAQQVSHEILSFIRKLSPNASI* >Glyma16g24570.2 sequence type=predicted peptide gene model=Glyma16g24570 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEHLDIVSEVKHQRIKTNGIWLHVAEKGTGPLVLLLHGFPETWYAWRHQINFLAHHGYHVVAPDLRGYGDSDSPIDPSSYTIHHLVGDIIGFLDHFGQHQEPGRAERAFARYDYLTVMKKFLLITRTDFLASPPGMELVDFLPTPSVVPSWITEEELMVFADKFQESGFTGPLNYYRAMDLNWELLAPWQGSKLTVPTKFVAGDKDIGFETAGTKAFVESDIFKSLVPNLEVVILDGHHFIHQEKAQQVSHEILSFIRKLSPNASI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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