Report for Sequence Feature Glyma16g24420
Feature Type: gene_model
Chromosome: Gm16
Start: 28316510
stop: 28320661
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma16g24420
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G36250 AT
Annotation by Michelle Graham. TAIR10: aldehyde dehydrogenase 3F1 | chr4:17151029-17153381 FORWARD LENGTH=484
SoyBase E_val: 0 ISS
GO:0006081 GO-bp
Annotation by Michelle Graham. GO Biological Process: cellular aldehyde metabolic process
SoyBase N/A ISS
GO:0008152 GO-bp
Annotation by Michelle Graham. GO Biological Process: metabolic process
SoyBase N/A ISS
GO:0009612 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to mechanical stimulus
SoyBase N/A ISS
GO:0019722 GO-bp
Annotation by Michelle Graham. GO Biological Process: calcium-mediated signaling
SoyBase N/A ISS
GO:0042631 GO-bp
Annotation by Michelle Graham. GO Biological Process: cellular response to water deprivation
SoyBase N/A ISS
GO:0055114 GO-bp
Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0005783 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
GO:0004028 GO-mf
Annotation by Michelle Graham. GO Molecular Function: 3-chloroallyl aldehyde dehydrogenase activity
SoyBase N/A ISS
GO:0004029 GO-mf
Annotation by Michelle Graham. GO Molecular Function: aldehyde dehydrogenase (NAD) activity
SoyBase N/A ISS
GO:0004030 GO-mf
Annotation by Michelle Graham. GO Molecular Function: aldehyde dehydrogenase [NAD(P)+] activity
SoyBase N/A ISS
GO:0016491 GO-mf
Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity
SoyBase N/A ISS
KOG2456
KOG
Aldehyde dehydrogenase
JGI ISS
PTHR11699 Panther
ALDEHYDE DEHYDROGENASE-RELATED
JGI ISS
PTHR11699:SF15 Panther
1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE
JGI ISS
PF00171 PFAM
Aldehyde dehydrogenase family
JGI ISS
UniRef100_I1MN90 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Aldehyde dehydrogenase n=2 Tax=Glycine max RepID=I1MN90_SOYBN
SoyBase E_val: 0 ISS
UniRef100_I1MN90 UniRef
Annotation by Michelle Graham. Best UniRef hit: Aldehyde dehydrogenase n=2 Tax=Glycine max RepID=I1MN90_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma16g24420
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma16g24420
Paralog Evidence Comments
Glyma02g05760 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma16g24420 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.16g131700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma16g24420
Coding sequences of Glyma16g24420
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma16g24420.1 sequence type=CDS gene model=Glyma16g24420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAGACCACCGCACTATAAATATTCATGTCCACATGAGTGGGAAGGTAGCGTTGAGGAAAATAAAAAAGAGAAAGAAAATAATCAATACGACAACTTTGCAATTTTGGTGGTAGACCAAGGTAGGTCAATTGCCATGGACATTGGTGGTGAAGTGGAAGAGACCGTGAGAGAGTTGAGGCAATACTTCAAAACTGGAAAAACCAAGAGTGTGACATGGAGGAAAAACCAGCTCACAGCTCTCTTAGACCTTGTTCATGAGAATGAAGATGCTATATTTAAGGCCCTCCATCAAGATCTTGGGAAGCACCCTGTTGAGGCTTACCGTGATGAGGTTGGAGGGGTAGAAAAATCCGCCAGCAATGCTTTGAGCTGCGTTGAGAAATGGATGGCCCCTAAAAAGAGTGATATCCCTTTTCTTTTCTTCCCAGCTAAAGGAGAAGTGTTGTCAGAACCACTTGGTGTGGTTCTCATATTTTCTTCTTGGAACTTCCCAATCATACTGACATTGGATCCAATAATTGGGGCAATATCTGCTGGAAATGTTGTAGTCATAAAACCTTCAGAGCAATCTCCAGCAAGCTCTTCTTTTCTTGCCACTACCATTCCTCGCTACTTGGACTCTAATGCCATCAAGGTGATTGAGGGAGGACCAGATGTCTGTGAACAACTACTGCTACAAAAATGGGACAAAATATTCTTCACTGGAAGTCCACGTGTGGCAAGCGTAGTCATGTCTGCTGCTGCAAAGAATTTAACTCCCGTTACTCTAGAGTTGGGTGGAAAATGCCCTGCCATTCTTGATTCCCTTCCAAATCCTTTAGAGTTTAAGTTGGCAGTAAAAAGAATTGTAGGAGGAAAGTGGGGACCTTGCAGTGGTCAAGCTTGCATAGCAATAGACTATTTGCTTGTTGAGAAGAAGTTCTCATATGCTCTGATAGAATTACTAAAGAAGATCATTAGAAGATTTTATGGTGAAAATCCAGTGGAGTCAAAGGTAATTTCAAGAATATTAAACAAGCAGCACTTTGAAAGATTATGCAATCTTCTCAAAGACCCTCTTGTTGCGGCTTCCATCGTTCATGGTGGTTCAGTTGACGAAGAAAACTTGTTCATTGAGCCAACAATTTTGTTAGATCCTCCGTTAGATTCTCAGATAATGTCAGAAGAGATATTTGGCCCACTGCTTCCTATAATCACTATGGATAAAATTCAGGAAAGTATTGAATTTATCAATGCAAAGCCAAAACCTCTTGCCATCTATGCCTTCACCAAAGATGAAACTTTCAAGAGAAATATTCTATCAGAAACATCCTCAGGAAGTGTCGTATTTAACGACACAATGGTTCAATTTTTATGTGATACACTACCATTTGGAGGTGTTGGCCAGAGTGGTTTTGGAAGGTACCATGGGAAGTACTCTTTTGACACTTTCAGCCATGAAAAAGCTGTAATGCATAGAAAGCTGTTCCTTGAAATTGAGCCAAGGTACCCTCCTTGGAGTAAGTTCAAGCTCGAGTTTATCAGATTGGCATACAGGCTGAACTACTTTGGACTATTACTGCACATGCTGGGCTTGAAAAGATACAAGTAG
Predicted protein sequences of Glyma16g24420
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma16g24420.1 sequence type=predicted peptide gene model=Glyma16g24420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MRPPHYKYSCPHEWEGSVEENKKEKENNQYDNFAILVVDQGRSIAMDIGGEVEETVRELRQYFKTGKTKSVTWRKNQLTALLDLVHENEDAIFKALHQDLGKHPVEAYRDEVGGVEKSASNALSCVEKWMAPKKSDIPFLFFPAKGEVLSEPLGVVLIFSSWNFPIILTLDPIIGAISAGNVVVIKPSEQSPASSSFLATTIPRYLDSNAIKVIEGGPDVCEQLLLQKWDKIFFTGSPRVASVVMSAAAKNLTPVTLELGGKCPAILDSLPNPLEFKLAVKRIVGGKWGPCSGQACIAIDYLLVEKKFSYALIELLKKIIRRFYGENPVESKVISRILNKQHFERLCNLLKDPLVAASIVHGGSVDEENLFIEPTILLDPPLDSQIMSEEIFGPLLPIITMDKIQESIEFINAKPKPLAIYAFTKDETFKRNILSETSSGSVVFNDTMVQFLCDTLPFGGVGQSGFGRYHGKYSFDTFSHEKAVMHRKLFLEIEPRYPPWSKFKLEFIRLAYRLNYFGLLLHMLGLKRYK*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
