SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G16460 | AT | Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF1640) | chr2:7133704-7135483 REVERSE LENGTH=230 | SoyBase | E_val: 6.00E-113 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005774 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0046872 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: metal ion binding | SoyBase | N/A | ISS |
| KOG3156 | KOG | Uncharacterized membrane protein | JGI | ISS | |
| PF07798 | PFAM | Protein of unknown function (DUF1640) | JGI | ISS | |
| UniRef100_G7LD03 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Coiled-coil domain-containing protein 90B n=1 Tax=Medicago truncatula RepID=G7LD03_MEDTR | SoyBase | E_val: 1.00E-133 | ISS |
| UniRef100_I1MN84 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MN84_SOYBN | SoyBase | E_val: 1.00E-169 | ISS |
|
Glyma16g24320 not represented in the dataset |
Glyma16g24320 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g131100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g24320.3 sequence type=transcript gene model=Glyma16g24320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTCCTTTTCATTTTTTATTTTTCCTATAATTAATATAATTTCAGTGCATTTTTGCACTGGATTGCACCGTCTCTTTTCTTTCCCCTTTGTTAGGAACAACACCACGCCACCTTTGTTTACGAACTCGTCGACTTGATGACTCATCACAACGCCACCACCACCGCCTAACGACCTAGAGCACCTTCTCTCTCCTCTAATTGGCCATTGCTTAAGTTGACTTGCTGCGAAGGTTGCTTTGATCATTTGAAGCGCCTGAAAATCGTTGTGCGAATTTTGAGGGTTCTGTTCTTGTAATCCGAAAATGGCCGCGATTCGGAGGCGGGTGTGGCAGTTATCTTCAATCGCAGGTTTCGGGGCTTCGAGATCGGAAGTGTCGTCGTCATTGTCGTCGTCCCAAAGAGCAATTTTCGATCCATTTTCTGTTTCGGGGACCAGACACTTTTCCCAAGTGGTGAAATCCAACCGCAAGCACTTGTTCCTCGTTGACACCTTGGCCCTTGTTAGGAGACTGGAAGGGGAAGGAGTGCCCTCGAAGCAAGCCGAGGCGATAACCGCTGCCATAACTGAGGTTTTGAATGACAGTCTCGAAAATGTGTCTCAGTCGTTGGTATCAAAGGCGCAGATGCAGAAAATTGAAATGATGCAAGAATCCAACCTGTCTAAGTTTAAAGCGGAGGTGCAGAGCTCACAGGGACACCATTTTTCTCTCTTACAACACGAGACTGAGAAGCTTAGGAATGATATAGAGAAGATGCGTAATGAGTTGAGGTATGAGATAGACAAAGTCACTGCTGGGCAGCGATTAGATTTGAACCTTGAAAGGGGGAGAATAAGGGAGGAATTGTCTAATCAGAATGCTGAAACTAACAACCTGACAAACAAACTTGATAGAGAGATCCATTCTTTAAGAGCACAACTGGAAGCAGCCAAATATGATGTCATAAAATATTGCATAGGAACACTTGTTTCGATTTCTGCTGTTGGTCTTGCTGTTTTACGCATATTGATGTAAATGGATTGTATTCCGATTAACATCCACAAAGATGAGGTGAAAAAGAATCAAGGGTAGCTCCGTAGCTGCATTGAAGATTTATCTTCTGTCAGAGAAACAATTGCATTACAATACTAGTACAACTTTTTTTTTTGGTCCATACTAGTGGAGCTGAAAGGAACGAGCTCCAATCAGGCACGAATTGGGCCTGTTTTTTAAGCCCCATTCTATATTCTTTTGTTAATTTATTTGACATGCCCTTTGGGATATTTGTGCAATTTATGCGTGGCTGTATGGTATGAGTACAATACAAGCACCTTGGATTATAATGCCTCGACCCTTCTACAAAAGTGGAAGAATCAAAATGCTTATTGGCACCAAGTCTATGCGAATTAGGTTCCTTTATTCGCTTCAAATTCACGATGTTGTTCAATCGATTTATAGGCATAGTAATACATAATATTATAACCAATGAAGAATAAAGAGAATATATTCTCAGATATTGGTTAATTGCTCATACCTATCCATAGAATTGACTGTAACCAGGGTTTTTAAAA
>Glyma16g24320.2 sequence type=CDS gene model=Glyma16g24320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCGCGATTCGGAGGCGGGTGTGGCAGTTATCTTCAATCGCAGGTTTCGGGGCTTCGAGATCGGAAGTGTCGTCGTCATTGTCGTCGTCCCAAAGAGCAATTTTCGATCCATTTTCTGTTTCGGGGACCAGACACTTTTCCCAAGTGGTGAAATCCAACCGCAAGCACTTGTTCCTCGTTGACACCTTGGCCCTTGTTAGGAGACTGGAAGGGGAAGGAGTGCCCTCGAAGCAAGCCGAGGCGATAACCGCTGCCATAACTGAGGTTTTGAATGACAGTCTCGAAAATGTGTCTCAGTCGTTGGTATCAAAGGCGCAGATGCAGAAAATTGAAATGATGCAAGAATCCAACCTGTCTAAGTTTAAAGCGGAGGTGCAGAGCTCACAGGGACACCATTTTTCTCTCTTACAACACGAGACTGAGAAGCTTAGGAATGATATAGAGAAGATGCGTAATGAGTTGAGGTATGAGATAGACAAAGTCACTGCTGGGCAGCGATTAGATTTGAACCTTGAAAGGGGGAGAATAAGGGAGGAATTGTCTAATCAGAATGCTGAAACTAACAACCTGACAAACAAACTTGATAGAGAGATCCATTCTTTAAGAGCACAACTGGAAGCAGCCAAATATGATGTCATAAAATATTGCATAGGAACACTTGTTTCGATTTCTGCTGTTGGTCTTGCTGTTTTACGCATATTGATGTAA >Glyma16g24320.3 sequence type=CDS gene model=Glyma16g24320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCGCGATTCGGAGGCGGGTGTGGCAGTTATCTTCAATCGCAGGTTTCGGGGCTTCGAGATCGGAAGTGTCGTCGTCATTGTCGTCGTCCCAAAGAGCAATTTTCGATCCATTTTCTGTTTCGGGGACCAGACACTTTTCCCAAGTGGTGAAATCCAACCGCAAGCACTTGTTCCTCGTTGACACCTTGGCCCTTGTTAGGAGACTGGAAGGGGAAGGAGTGCCCTCGAAGCAAGCCGAGGCGATAACCGCTGCCATAACTGAGGTTTTGAATGACAGTCTCGAAAATGTGTCTCAGTCGTTGGTATCAAAGGCGCAGATGCAGAAAATTGAAATGATGCAAGAATCCAACCTGTCTAAGTTTAAAGCGGAGGTGCAGAGCTCACAGGGACACCATTTTTCTCTCTTACAACACGAGACTGAGAAGCTTAGGAATGATATAGAGAAGATGCGTAATGAGTTGAGGTATGAGATAGACAAAGTCACTGCTGGGCAGCGATTAGATTTGAACCTTGAAAGGGGGAGAATAAGGGAGGAATTGTCTAATCAGAATGCTGAAACTAACAACCTGACAAACAAACTTGATAGAGAGATCCATTCTTTAAGAGCACAACTGGAAGCAGCCAAATATGATGTCATAAAATATTGCATAGGAACACTTGTTTCGATTTCTGCTGTTGGTCTTGCTGTTTTACGCATATTGATGTAA
>Glyma16g24320.2 sequence type=predicted peptide gene model=Glyma16g24320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAAIRRRVWQLSSIAGFGASRSEVSSSLSSSQRAIFDPFSVSGTRHFSQVVKSNRKHLFLVDTLALVRRLEGEGVPSKQAEAITAAITEVLNDSLENVSQSLVSKAQMQKIEMMQESNLSKFKAEVQSSQGHHFSLLQHETEKLRNDIEKMRNELRYEIDKVTAGQRLDLNLERGRIREELSNQNAETNNLTNKLDREIHSLRAQLEAAKYDVIKYCIGTLVSISAVGLAVLRILM* >Glyma16g24320.3 sequence type=predicted peptide gene model=Glyma16g24320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAAIRRRVWQLSSIAGFGASRSEVSSSLSSSQRAIFDPFSVSGTRHFSQVVKSNRKHLFLVDTLALVRRLEGEGVPSKQAEAITAAITEVLNDSLENVSQSLVSKAQMQKIEMMQESNLSKFKAEVQSSQGHHFSLLQHETEKLRNDIEKMRNELRYEIDKVTAGQRLDLNLERGRIREELSNQNAETNNLTNKLDREIHSLRAQLEAAKYDVIKYCIGTLVSISAVGLAVLRILM*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
