Glyma16g24200 - SoyBase

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Report for Sequence Feature Glyma16g24200

Feature Type:	gene_model
Chromosome:	Gm16
Start:	27988641
stop:	27992230
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g24200

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G18060	AT	Annotation by Michelle Graham. TAIR10: vascular related NAC-domain protein 1 \| chr2:7848399-7850303 REVERSE LENGTH=365	SoyBase	E_val: 4.00E-138	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009741	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to brassinosteroid stimulus	SoyBase	N/A	ISS
GO:0010089	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylem development	SoyBase	N/A	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PF02365	PFAM	No apical meristem (NAM) protein	JGI		ISS
UniRef100_E5KUH9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor n=1 Tax=Populus trichocarpa RepID=E5KUH9_POPTR	SoyBase	E_val: 6.00E-171	ISS
UniRef100_UPI000233B906	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233B906 related cluster n=1 Tax=unknown RepID=UPI000233B906	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma16g24200

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma16g24200

Paralog	Evidence	Comments
Glyma02g05620	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma16g24200 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g130200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g24200

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma16g24200

Limit To All Plant Sequences

>Glyma16g24200.2   sequence type=CDS   gene model=Glyma16g24200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGAGTCATGTATCCCACCGGGGTTTCGGTTCCACCCAACAGATGAAGAGCTTGTGGGTTACTATCTGAGGAAGAAAGTTGCTTCTCAGAAGATTGATCTTGACGTTATCAAAGAGATCGACCTATATCGTATTGAACCATGGGATCTCCAAGAGACATACAGGATTGGGTACGAGGAGCAGAACGAGTGGTATTTCTTTAGCCACAAAGACAAGAAATATCCAACTGGGACAAGAACCAACAGAGCCACCATGGCAGGATTTTGGAAGGCGACAGGAAGAGACAAATCAGTGTACGAAAGGACCAAACTCATTGGCATGAGAAAGACCCTCGTTTTCTACAAAGGAAGAGCCCCTAATGGACAAAAAACTGATTGGATCATGCACGAGTATAGGCTTGAAACTGTTGAGAATGGACCTCCACAGGAGGAAGGATGGGTGGTGTGCAGAGCATTCAAGAAAAGAACAACTAACGGCCAAACGAAGACTATTGAAGGATGGCATCGAAACTGCTTATACGATGAACAACAACAAGCATGTGGTAGTGTCAGCAGCACTGTGGTGGACCCTAATATTGACCTTATGTTAAGGCAACAACCTCAGAGGTTTTCAGGAGCTCAAAATTTCATGTACAAGCAAGAAGAGATCATAGAAGCAGATAATAATAATTTGAGCTTCATGCATGCAGAACAACAATTGGTGCAGCTTCCTCATCTAGAAAGTCCTTCTTTGCCACTAGCAAAGAAACAAAGCTCAGTAGTGTCCCCAATATCAGACAATATTAATAACAACGAAGATGATGATAATCCTCAAAAGGGTTTATCCAACACTACAAAGAAAGTGACCACTGATTGGAGAGCTCTTGACAAGTTCGTGGCTTCTCAGTTGAGCCAAGAAGAGAGGCATGAAATAGAAGGGGTGTCAAGCTTTGCAACTCATCACACTACTACTAGCTCGGACATGGCATTGCTGCTACTGCAGAATAATAGTAGGGAAAATGAAAGGAACAACAAGTTCAACCCGTTTTTCAATACAAGCTCAACAATATCAGACTGTGACATTGGGATATGCGTATTTGAAAAATGA

Predicted protein sequences of Glyma16g24200

Limit To All Plant Sequences

>Glyma16g24200.2   sequence type=predicted peptide   gene model=Glyma16g24200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMESCIPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIKEIDLYRIEPWDLQETYRIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKSVYERTKLIGMRKTLVFYKGRAPNGQKTDWIMHEYRLETVENGPPQEEGWVVCRAFKKRTTNGQTKTIEGWHRNCLYDEQQQACGSVSSTVVDPNIDLMLRQQPQRFSGAQNFMYKQEEIIEADNNNLSFMHAEQQLVQLPHLESPSLPLAKKQSSVVSPISDNINNNEDDDNPQKGLSNTTKKVTTDWRALDKFVASQLSQEERHEIEGVSSFATHHTTTSSDMALLLLQNNSRENERNNKFNPFFNTSSTISDCDIGICVFEK*

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