SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G17990 | AT | Annotation by Michelle Graham. TAIR10: BEST Arabidopsis thaliana protein match is: kinectin-related (TAIR:AT5G66250.3); Has 7578 Blast hits to 6129 proteins in 783 species: Archae - 220; Bacteria - 1045; Metazoa - 3605; Fungi - 575; Plants - 442; Viruses - 38; Other Eukaryotes - 1653 (source: NCBI BLink). | chr2:7827480-7828596 FORWARD LENGTH=338 | SoyBase | E_val: 1.00E-132 | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| UniRef100_I1MN67 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MN67_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q5Z9P7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Calcium-dependent protein kinase CPK1 adapter protein 2-like n=1 Tax=Oryza sativa Japonica Group RepID=Q5Z9P7_ORYSJ | SoyBase | E_val: 1.00E-137 | ISS |
|
Glyma16g23960 not represented in the dataset |
Glyma16g23960 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g05520 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g129200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g23960.2 sequence type=transcript gene model=Glyma16g23960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTCTCAATTTCTTTGTACAACCAACTTCTGGAGCAATTTTTAACTTGAAGAAAGGAGGAAAAACAAAAAATAAAAATAAAAAAAGGCAAAGGGGAAAGTGGCAAAAGGTGGGACGATGAATAAAGCAACTGCTGCTTATCTGAGAAATGGGTTTTTGCTTCCTTTCTTTTCTTTTTCTTCGAAAGAAAGAGAAAGAGAAAGAAAAAAGATATCCGTAAGACCTTGATCCAACTCATCATCGTGTTCGTCTTCTTCTTCTTCTTCTTCCTTCAACTCGCTTTTCTTCCAACCAGGACATGGCAGCAGATGAAGATATGTCAGCTTTGAAGTCTAAGCTGAGCCAATCAAATGAAACTTGGAAGAAGGAGATGGAAAGAAGCCAATCTCAAGTGGATGTATTGCAGGCAAGGATAATGGAGGTAAAGGCACAAATACAAGGCTCAGAGGAAGATGCGAAAAAGGAGTTAGAGGTTCTATGGCGAAGAGTCAAGACTACTTCTACCCTGTTGACCTACTTAAAATCAAAAGCTAGAATCATGGCTGTTCCTCATCTAGCCCATACATCTTGTGGCATAAAAAAGTTAGATGGAGTAGGGCTTGTTGACAAAGATGGGATTCCATTATCAGGTTGGTCTAGGAATGTTGATCTTTGTTCCTTTGATGATCCAGATGAAGAATCTTGGATTGGAATTAACCGTCAGCATGGTTCCTTGGACCAACAAGATGCAGTTTATATAGGTGAGATACTCAAGTCTGTTCAGATGGTCACGGATGTGATGGAAGCCCTTGTCAAAAGAGTTTTATTGGCAGAATCAGAAACTACTTTTGAGAAGGAAAAAGTGAGTTTAGGTCAGGAAGAAATTATGCGAAAGTCTGCTCAGTTAGAGAATATGTCCATGAAATTGGAGGAGATGGAGCGTTTTGCTTTGGGTACAAATGGTATTTTGAATGACATGCGGCAAAAAGTTGCAGATTTGGTGGAAGAAACAACTAGACAGAGACAGCGTGCTGCTGAAAATGAAGAAGAGCTTTCTAGAGTGAAACGGGAGTTTGAGTCTCTAAAGTCATATGTTAGTAGTCTAATCACAGTTAGAGAAACCTTACTTTCTTCAGAGAAGCAATTCCAAACTATTGAGAAGCTGTTTGAGCGGTAAACATATATTGTTATGCAATTGCTTCTATTAAATGTCTTGATAATAATCTAGTGTTTGGCCTGCATCGAAGTGTTTGACATAGATGCAATGGCATGCTTCCTGCTTCTTTTTTATGCTTAAATATAATTTTCTCTAGTATAT
>Glyma16g23960.1 sequence type=CDS gene model=Glyma16g23960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAGCAGATGAAGATATGTCAGCTTTGAAGTCTAAGCTGAGCCAATCAAATGAAACTTGGAAGAAGGAGATGGAAAGAAGCCAATCTCAAGTGGATGTATTGCAGGCAAGGATAATGGAGGTAAAGGCACAAATACAAGGCTCAGAGGAAGATGCGAAAAAGGAGTTAGAGGTTCTATGGCGAAGAGTCAAGACTACTTCTACCCTGTTGACCTACTTAAAATCAAAAGCTAGAATCATGGCTGTTCCTCATCTAGCCCATACATCTTGTGGCATAAAAAAGTTAGATGGAGTAGGGCTTGTTGACAAAGATGGGATTCCATTATCAGGTTGGTCTAGGAATGTTGATCTTTGTTCCTTTGATGATCCAGATGAAGAATCTTGGATTGGAATTAACCGTCAGCATGGTTCCTTGGACCAACAAGATGCAGTTTATATAGGTGAGATACTCAAGTCTGTTCAGATGGTCACGGATGTGATGGAAGCCCTTGTCAAAAGAGTTTTATTGGCAGAATCAGAAACTACTTTTGAGAAGGAAAAAGTGAGTTTAGGTCAGGAAGAAATTATGCGAAAGTCTGCTCAGTTAGAGAATATGTCCATGAAATTGGAGGAGATGGAGCGTTTTGCTTTGGGTACAAATGGTATTTTGAATGACATGCGGCAAAAAGTTGCAGATTTGGTGGAAGAAACAACTAGACAGAGACAGCGTGCTGCTGAAAATGAAGAAGAGCTTTCTAGAGTGAAACGGGAGTTTGAGTCTCTAAAGTCATATGTTAGTAGTCTAATCACAGTTAGAGAAACCTTACTTTCTTCAGAGAAGCAATTCCAAACTATTGAGAAGCTGTTTGAGCGGTTAGTTGGAAAGACTACCCAATTGGAAGGTGAGAAAATGCAGAAAGAGGCTGAAGTACAGAAACTTATGGAAGAGAATGTGAGGTTGAGTGCTCTGCTTGACAAGAAAGAGGCTCAACTTCTAGCATTGAATGAACAATGTAAAATGATGGCCTTGAGCGCTTCAAACATGTAA >Glyma16g23960.2 sequence type=CDS gene model=Glyma16g23960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAGCAGATGAAGATATGTCAGCTTTGAAGTCTAAGCTGAGCCAATCAAATGAAACTTGGAAGAAGGAGATGGAAAGAAGCCAATCTCAAGTGGATGTATTGCAGGCAAGGATAATGGAGGTAAAGGCACAAATACAAGGCTCAGAGGAAGATGCGAAAAAGGAGTTAGAGGTTCTATGGCGAAGAGTCAAGACTACTTCTACCCTGTTGACCTACTTAAAATCAAAAGCTAGAATCATGGCTGTTCCTCATCTAGCCCATACATCTTGTGGCATAAAAAAGTTAGATGGAGTAGGGCTTGTTGACAAAGATGGGATTCCATTATCAGGTTGGTCTAGGAATGTTGATCTTTGTTCCTTTGATGATCCAGATGAAGAATCTTGGATTGGAATTAACCGTCAGCATGGTTCCTTGGACCAACAAGATGCAGTTTATATAGGTGAGATACTCAAGTCTGTTCAGATGGTCACGGATGTGATGGAAGCCCTTGTCAAAAGAGTTTTATTGGCAGAATCAGAAACTACTTTTGAGAAGGAAAAAGTGAGTTTAGGTCAGGAAGAAATTATGCGAAAGTCTGCTCAGTTAGAGAATATGTCCATGAAATTGGAGGAGATGGAGCGTTTTGCTTTGGGTACAAATGGTATTTTGAATGACATGCGGCAAAAAGTTGCAGATTTGGTGGAAGAAACAACTAGACAGAGACAGCGTGCTGCTGAAAATGAAGAAGAGCTTTCTAGAGTGAAACGGGAGTTTGAGTCTCTAAAGTCATATGTTAGTAGTCTAATCACAGTTAGAGAAACCTTACTTTCTTCAGAGAAGCAATTCCAAACTATTGAGAAGCTGTTTGAGCGGTAA
>Glyma16g23960.1 sequence type=predicted peptide gene model=Glyma16g23960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAADEDMSALKSKLSQSNETWKKEMERSQSQVDVLQARIMEVKAQIQGSEEDAKKELEVLWRRVKTTSTLLTYLKSKARIMAVPHLAHTSCGIKKLDGVGLVDKDGIPLSGWSRNVDLCSFDDPDEESWIGINRQHGSLDQQDAVYIGEILKSVQMVTDVMEALVKRVLLAESETTFEKEKVSLGQEEIMRKSAQLENMSMKLEEMERFALGTNGILNDMRQKVADLVEETTRQRQRAAENEEELSRVKREFESLKSYVSSLITVRETLLSSEKQFQTIEKLFERLVGKTTQLEGEKMQKEAEVQKLMEENVRLSALLDKKEAQLLALNEQCKMMALSASNM* >Glyma16g23960.2 sequence type=predicted peptide gene model=Glyma16g23960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAADEDMSALKSKLSQSNETWKKEMERSQSQVDVLQARIMEVKAQIQGSEEDAKKELEVLWRRVKTTSTLLTYLKSKARIMAVPHLAHTSCGIKKLDGVGLVDKDGIPLSGWSRNVDLCSFDDPDEESWIGINRQHGSLDQQDAVYIGEILKSVQMVTDVMEALVKRVLLAESETTFEKEKVSLGQEEIMRKSAQLENMSMKLEEMERFALGTNGILNDMRQKVADLVEETTRQRQRAAENEEELSRVKREFESLKSYVSSLITVRETLLSSEKQFQTIEKLFER*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
