Glyma16g23870 - SoyBase

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Report for Sequence Feature Glyma16g23870

Feature Type:	gene_model
Chromosome:	Gm16
Start:	27705938
stop:	27710703
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g23870

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G66210	AT	Annotation by Michelle Graham. TAIR10: calcium-dependent protein kinase 28 \| chr5:26456681-26459434 REVERSE LENGTH=523	SoyBase	E_val: 0	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0004683	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calmodulin-dependent protein kinase activity	SoyBase	N/A	ISS
GO:0004713	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein tyrosine kinase activity	SoyBase	N/A	ISS
GO:0005509	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calcium ion binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG0032	KOG	Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily	JGI		ISS
PTHR24349	Panther	SERINE/THREONINE-PROTEIN KINASE	JGI		ISS
PTHR24349:SF13	Panther		JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
UniRef100_I1MN60	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MN60_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q5D875	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Calcium-dependent protein kinase n=1 Tax=Medicago truncatula RepID=Q5D875_MEDTR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma16g23870

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma16g23870

Paralog	Evidence	Comments
Glyma02g05440	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma16g23870 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g128600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g23870

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma16g23870

Limit To All Plant Sequences

>Glyma16g23870.3   sequence type=CDS   gene model=Glyma16g23870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGAGGGAGGGGTATCATCCGAACCCCGTCCCGTTCTCACTGTCTCATTCAAAGCGTTTTCGACCCTCTCCGACCATGGGAACCTGCTTTTCCGCCACCAAAGTCAGCGGCTCCCACGGCAACGCCGTCACCGTCAACAAGAACCGCAAGGGGGCCGCGAAGCCGAAATCAGAGACGGCAACGGCGAATCCCCTACGGCACAAGGCAAGTTCGCGCCACGTGCCGTGCGGGAAGCGCACCGATTTCGGTTACGAGAAGGATTTCGATCAGCGTTACTCGCTCGGAAAATTGCTCGGGCACGGCCAATTTGGTTACACTTACGTTGGAATCGACAAAGCCAATGGCGATCGCGTCGCCGTTAAGAGGCTTGAGAAGAGTAAGATGGTTCTGCCTATTGCCGTTGAGGATGTTAAGCGAGAGGTCAAGATATTGAAAGCACTTACTGGCCATGAGAATGTGGTTCAGTTCTATAATGCTTTTGAAGATGGTTCTTATGTGTACATAGTTATGGAGTTGTGCGAGGGTGGAGAACTGCTAGATCGGATATTGGCCAAGAAGGACAGTCGTTATACTGAAAGAGACGCAGCGGTGGTTGTAAGGCAGATGCTCAAGGTTGCAGCTGAGTGTCATTTACATGGTTTGGTACACCGGGACATGAAACCAGAGAATTTTCTTTTTAAATCAACCAAAGAAGATTCACCTTTAAAGGCCACTGATTTTGGTTTGTCAGATTTCATAAAACCTGGAAAAAAGTTTCATGATATTGTTGGCAGTGCTTACTATGTTGCACCTGAAGTGTTAAAACGTAAGTCTGGTCCTCAATCAGATGTGTGGAGTATTGGTGTTATTACATACATATTGTTGTGCGGAAGACGCCCATTTTGGGATAAGACTGAGGATGGTATCTTCAAGGAGGTCTTACGTAAGAAGCCCGATTTTCGTCGGAAACCATGGCCAACTATTAGTAATGCTGCAAAAGATTTTGTGAAAAAATTACTAGTAAAGGATCCTCGGGCGAGATTAACTGCTGCTCAAGCTTTATCACATCCATGGGTTAGAGAAGGAGGAGAAGCATTGGAGATTCCTATTGATATATCTGTCCTGAGCAACATGCGGCAGTTTGTGAAATATAGTCGATTCAAACAATTTGCACTGAGGGCATTGGCTAGCACACTTAATGAAGAAGAGTTGGCTGATATAAAAGATCAATTTGATGCTATAGATGTAGACAAAAATGGTTCGATTAGCCTGGAAGAGATGAGACAGGCTCTTGCCAAAGATCTTCCTTGGAAATTGAAAGAATCACGTGTACTAGAGATATTGCAAGCGATAGACAACAACACTGATGGTCTAGTGGATTTCCGGGAGTTTGTAGCGGCTACATTACACGTGCATCAATTGGAGGAAGACTCTGACAAGTGGCAGCAACTGTCACAGGCTGCTTTTGAGAAATTTGACCTAGATAAAGATGGCTATATTACTCCGGAAGAACTTAGAATGCATACATGCTTGAGAGGCTCCGTTGATCCTTTGCTAGAGGAAGCTGATATTGACAAAGATGGAAAAATAAGCCTACCAGAGTTTCGGAGACTTCTTAGAACTGCAAGCATGGGTTCTCAAAATGTTTCAAGCCCATCTGTTCATCGGCGGCAGAGGTTCTAG

Predicted protein sequences of Glyma16g23870

Limit To All Plant Sequences

>Glyma16g23870.3   sequence type=predicted peptide   gene model=Glyma16g23870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSREGYHPNPVPFSLSHSKRFRPSPTMGTCFSATKVSGSHGNAVTVNKNRKGAAKPKSETATANPLRHKASSRHVPCGKRTDFGYEKDFDQRYSLGKLLGHGQFGYTYVGIDKANGDRVAVKRLEKSKMVLPIAVEDVKREVKILKALTGHENVVQFYNAFEDGSYVYIVMELCEGGELLDRILAKKDSRYTERDAAVVVRQMLKVAAECHLHGLVHRDMKPENFLFKSTKEDSPLKATDFGLSDFIKPGKKFHDIVGSAYYVAPEVLKRKSGPQSDVWSIGVITYILLCGRRPFWDKTEDGIFKEVLRKKPDFRRKPWPTISNAAKDFVKKLLVKDPRARLTAAQALSHPWVREGGEALEIPIDISVLSNMRQFVKYSRFKQFALRALASTLNEEELADIKDQFDAIDVDKNGSISLEEMRQALAKDLPWKLKESRVLEILQAIDNNTDGLVDFREFVAATLHVHQLEEDSDKWQQLSQAAFEKFDLDKDGYITPEELRMHTCLRGSVDPLLEEADIDKDGKISLPEFRRLLRTASMGSQNVSSPSVHRRQRF*

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