SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G17880 | AT | Annotation by Michelle Graham. TAIR10: Chaperone DnaJ-domain superfamily protein | chr2:7767176-7767658 REVERSE LENGTH=160 | SoyBase | E_val: 5.00E-31 | ISS |
| GO:0006457 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein folding | SoyBase | N/A | ISS |
| GO:0009744 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus | SoyBase | N/A | ISS |
| GO:0009750 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0031072 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: heat shock protein binding | SoyBase | N/A | ISS |
| PTHR25040 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR25040:SF170 | Panther | JGI | ISS | ||
| PF00226 | PFAM | DnaJ domain | JGI | ISS | |
| UniRef100_G7LC41 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Chaperone protein dnaJ n=1 Tax=Medicago truncatula RepID=G7LC41_MEDTR | SoyBase | E_val: 4.00E-44 | ISS |
| UniRef100_I1MN49 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1MN49_SOYBN | SoyBase | E_val: 2.00E-101 | ISS |
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Glyma16g23740 not represented in the dataset |
Glyma16g23740 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g05390 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g127600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g23740.2 sequence type=CDS gene model=Glyma16g23740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTTGCAACATCTTTTTCCATTGTCACTCTCACCACTACCAATTTCTCTGTTGAAAGCATTTCCTCGTTGTCGCACCACGTCAAACTCCAATCTACAGTATCCTTCGCCACTGCCAGATGGACGGAGAAGCAACAACAACAACAACACAGGCATGTTTCGGATCTGAGCCTTCACCAGATGGCTTCATGCACGACGTTGTATGAGATTTTGGGAATTCGTGTCACTGCGTCCGACGAGGAAATAAAGGCGGCATATCGACGACTGGCGAGGGTCTACCACCCTGACGTGGCACCAGCGGAGCGAAAGGAATCCTTTACGGGTGAGTTCATGAAGATACACACTGCGTACCGTACACTGTCAGATCCTGAGAAGCGTGCCAACTATGATAGAAGCTTGATCCGACGCCACCAGAAACCGCTCACAATGTCATCATCATCGTTGTGGGGGTTTTCCGGATACACTAGTCACAAGTGGAAAACAGACCAATGTTGGTAA
>Glyma16g23740.2 sequence type=predicted peptide gene model=Glyma16g23740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLATSFSIVTLTTTNFSVESISSLSHHVKLQSTVSFATARWTEKQQQQQHRHVSDLSLHQMASCTTLYEILGIRVTASDEEIKAAYRRLARVYHPDVAPAERKESFTGEFMKIHTAYRTLSDPEKRANYDRSLIRRHQKPLTMSSSSLWGFSGYTSHKWKTDQCW*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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