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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G17820 | AT | Annotation by Michelle Graham. TAIR10: histidine kinase 1 | chr2:7743133-7748013 REVERSE LENGTH=1207 | SoyBase | E_val: 0 | ISS |
| GO:0006970 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to osmotic stress | SoyBase | N/A | ISS |
| GO:0009414 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to water deprivation | SoyBase | N/A | ISS |
| GO:0010375 | GO-bp | Annotation by Michelle Graham. GO Biological Process: stomatal complex patterning | SoyBase | N/A | ISS |
| GO:0010431 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed maturation | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0000155 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphorelay sensor kinase activity | SoyBase | N/A | ISS |
| GO:0000156 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphorelay response regulator activity | SoyBase | N/A | ISS |
| GO:0004673 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein histidine kinase activity | SoyBase | N/A | ISS |
| GO:0004871 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: signal transducer activity | SoyBase | N/A | ISS |
| GO:0005034 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: osmosensor activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0009927 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: histidine phosphotransfer kinase activity | SoyBase | N/A | ISS |
| GO:0016772 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups | SoyBase | N/A | ISS |
| KOG0519 | KOG | Sensory transduction histidine kinase | JGI | ISS | |
| PTHR24423 | Panther | TWO COMPONENT SIGNAL TRANSDUCTION PROTEIN-RELATED | JGI | ISS | |
| PF00072 | PFAM | Response regulator receiver domain | JGI | ISS | |
| PF00512 | PFAM | His Kinase A (phosphoacceptor) domain | JGI | ISS | |
| PF02518 | PFAM | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | JGI | ISS | |
| UniRef100_G7LC07 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Histidine kinase n=1 Tax=Medicago truncatula RepID=G7LC07_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233F054 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233F054 related cluster n=1 Tax=unknown RepID=UPI000233F054 | SoyBase | E_val: 0 | ISS |
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Glyma16g23420 not represented in the dataset |
Glyma16g23420 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g125100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g23420.2 sequence type=CDS gene model=Glyma16g23420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGTACCAAGTACATACACGTTTTTGATAGATTACAGAGTTTTTTCACTTGTTGGAAGAGAAGCACCACTCCAACTGGCAGAAGAATTTTCCACAGGGATGTGGAAAAGGAAGAATTTCAGTATGCCAGCACTCAATGTCTCTCATCTTACTACAGTGTCTTTGTGGTTCGTCTAGCAATCATGGCCATGCTAGCCATATTGATTGGTCTGCTCACTTTCCTAACATGGCATTTCACAAAGATTTATACAACAAAGTCTCTTAATAGCTTGGCATATGACCTGCGTTATGAACTTCTTCAACGCCCCATCTTGAGGATGTGGAACATTTTGAATTCTACTGCTGAAATTACAACTGCTCAGGTTAAGCTGTCTCAATATGTGATCAGAAGCCACACCAACCTTGCCACTCAAGCAGACCAAGTTGAGATGTATGACGCGATGAGGGCTGTAACATGGGCTCTGTTTGTTAGTAAAAAGGCTCTCAATTCAATAACTGTCAAATACAAGAATGGATTTGTCCAAGCATTCCATAGGGACCTGAAGGATAACAATACCTTTTACATTTATTCTGATCTTGCTAATTACTCCATGGCTGCCAGTGGCTACAATGCTATCAATTCGCATTCTTCGCGTGAAGCTTGGAACGATAAAGACATTCATGGTCACAAGGCTGCAGTTTGGTATCGCGAACCACTTGATCCCGTCAGTGGTGAGAAGATTGGAAAAGTAATGCCAATTGCACCAGAAGACTCGATCAATATAGCCGGCCTCTCCCAAGTACCTGACGGTGTAGCTTCGTGGCACGTTGCTGTTAGCAAGTTTACAGATTCACCTTTGCTTTCTGCAGCATTGCCAGTTTGGGACTCTTCTAATAAAAGCATTGTGGCAGTTGTGGGTGTCACAACTGCACTTTACAGTGTGGGGCAGCTCATGAAAGAGCTAGTTGAGAAACATAGTGGTCACATGTATTTGACCTCCCAAGAAGGTTACTTACTTGCAACTTCCACAAATGCACCTCTACTGTCAAATACTACCAAACCTCCTAAGCTTAAGATGGCTGTTGACTGTGAAAATGAAGTAATAAGAGAGGGAGCTCAGTGGCTTCAGAAAACCTATGGGAACAATTTCCCTCAAAGTCATGAGCTTCATGTAGAGAATGTCAGGCTAGGCCGCCAACAATATTACATCGACTCATTCTTCCTGAATTTGAAGAGACTTCCTCTGGTGGGTGTAATCATCATACCTAGAAAGCATATCATGGGGCAGGCAGATGAAAGAGCCTTCAAAACATTGGTTATTCTGATATCTGCATCATTGTGTATTATTGTCATTGGATGTGTTTGCATTTTGATACTGACTAATGGAGTATCAAAGGAAATGAAACTCAGAGCAGAACTGATCAGTCATCTGGAAGCAAGAAGGAAGGCAGAGGCATCAAGCAACTACAAAAGTCAATTTCTTGCAAATATGAGTCATGAATTGAGGACACCAATGGCCGCAGTGATTGGGTTACTTGACATTCTTATATCTGATGACCGACTCACAAATGAGCAATGTGCAACAGTTACTCAAATAAGAAAATGCTCAACTGCCCTGCTTCGTCTACTTAATAACATCTTGGATCTGAGCAAGGTGGAATCTGGAAAACTGGTCCTAGAAGATGCAGAATTTGACTTGGGACGGGAACTTGAAGGGCTTGTAGATATGTTTTCTGTGCAGTGCATTAACCACAATGTAGAGACTGTTTTAGACCTTTCTGATGATATGCCAAAGCTAGTTCGGGGCGATTCTGCTAGAGTAGTTCAAATTTTTGCAAATTTGATCAACAACTCAATTAAGTTTACTCTATCGGGTCACATTATTCTGAGAGGATGGTGTGAAAACCCAAATTCTTGCAGTGATAATACAAATTTTCCTCTAGAGAAAAAGAAATCACGGTGTTCACAAAAGACCAGAGCAAAGCAACATGAAAACCATGCAAAGAGGACTTCCAATAGAGATAACAAAATCATACTTTGGTTTGAAGTTGATGATACAGGCTGTGGTATTGACCCAAGTAAATGGGAATCTGTGTTTGAAAGCTTTGAGCAAGCTGATCCATCAACTACTAGACTGCATGGAGGTACTGGTCTTGGTCTTTGCATAGTCAGAACCTTGGTTAATAAGATGGGTGGAGAAATCAAAGTTGTCAAAAAGGAGGGCCCAGGAACACTGATGAGATTATGCTTGCGTCTCAGTGCACCTGTAGATGCCACAGAACAACATTGTCAAGTAGATTTTGCTAACAAGGGCTTAGTGGTACTTCTTGCACTACACGGCAACATGGGTCGATCAGCTACATCTAAGTGGTTACAGAAAAATGGTGTGGTCACTATGGAGGCAGCAGAATGGAATGGATTAACACAAATTCTTAGGGTACTCTTTCATGCAAGAAGTTCATCTCATAATAATGGCTTTGATGCAAACTATTCAGTTCATGACAATTTAAAGTCAAGATTACTGAGCATACAGGAATTGAGGAACCCTGTTTTTGCCATTGCTGTTGACATTGGACTACTTGACTTGAGCACAGATATATGGAAGGAACAGATAAATTTCCTTCACAAATACTATGGGAGAGCAAAATTCGTGTGGATGCTAAACCATGACTCCTCCAATTCCATAAAGATGGAGCTTCGCAGGAAAGGACATACACTGACAGTGAACAAACCCCTTTACAAAACAAAAATGATTCATATTTTGGAAGCCATCATAAAGGAGAGAAATGAAGAGCTGCAAAAGAAAAATATGACTACTCCAAGAGCTACTGTGAAAGAGGGAGATTTGCATGAGAGTCTTGAGATTGATTATACTCAATGTGATGTTGCAAGCTCGGATGGTTCAGACATATCCGAAAAGGGTGGTTCTAATCCTGTTAGTGCCTGTGGAGATAAACAAAGAGAGAAGGTAGCGAGATCTGATCCATCATCACAACACCAGATAAATAACTTAGTTGGATTAACAATGGAAGATAATAATCATAGGAAAGAAGAGTTATGTCAGAGCAGCCTCAACTCTAATGATGTCAGTGCAAACGCCACACCAAAATCATCCTCCACTAAACAATCATCAACAGGAGCTCAAGATGAAGATTCTGAATATGGTGAAACACGTAGGGCCAGTAGCTCAAGTAGAGCAGTGATTGGAAAGAAATCTCTTGAAGGTTTGAGGATATTGCTTGCAGAAGATACACCGGTTATTCAAAGGGTTGCAACCATAATGCTTGAAAAAATGGGAGCCGTCGTTGTAGCTGTAGGTGATGGACAACAGGCAGTGGATGCTCTAAATGGCATGCCTGGTGTTGAAGATTGTATAAGGGAGTCTCTCCTGAAGGAAAGAAACACAAGATCATCTCAAACTGAGATTCTCGGTTGCCCTCCATATGATTTGATCCTAATGGATTGTCAGATGCCAAAGATGGATGGCTATGAGGCAACAAAAGCAATCCGGAAATCGGAAGTGGGAACTGACTTGCACATTCCAATTGTTGCTCTTACAGCTCATGCAATGTCATGTGATGAAGCCAAGTGCCTAGAGGTGGGCATGGATGCTTATTTAACAAAGCCAATTGACTTCAAACTGATGGAGTCCACCATTCTTTCACTCACGAGAAGGACATCCTAA
>Glyma16g23420.2 sequence type=predicted peptide gene model=Glyma16g23420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSTKYIHVFDRLQSFFTCWKRSTTPTGRRIFHRDVEKEEFQYASTQCLSSYYSVFVVRLAIMAMLAILIGLLTFLTWHFTKIYTTKSLNSLAYDLRYELLQRPILRMWNILNSTAEITTAQVKLSQYVIRSHTNLATQADQVEMYDAMRAVTWALFVSKKALNSITVKYKNGFVQAFHRDLKDNNTFYIYSDLANYSMAASGYNAINSHSSREAWNDKDIHGHKAAVWYREPLDPVSGEKIGKVMPIAPEDSINIAGLSQVPDGVASWHVAVSKFTDSPLLSAALPVWDSSNKSIVAVVGVTTALYSVGQLMKELVEKHSGHMYLTSQEGYLLATSTNAPLLSNTTKPPKLKMAVDCENEVIREGAQWLQKTYGNNFPQSHELHVENVRLGRQQYYIDSFFLNLKRLPLVGVIIIPRKHIMGQADERAFKTLVILISASLCIIVIGCVCILILTNGVSKEMKLRAELISHLEARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDILISDDRLTNEQCATVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDMPKLVRGDSARVVQIFANLINNSIKFTLSGHIILRGWCENPNSCSDNTNFPLEKKKSRCSQKTRAKQHENHAKRTSNRDNKIILWFEVDDTGCGIDPSKWESVFESFEQADPSTTRLHGGTGLGLCIVRTLVNKMGGEIKVVKKEGPGTLMRLCLRLSAPVDATEQHCQVDFANKGLVVLLALHGNMGRSATSKWLQKNGVVTMEAAEWNGLTQILRVLFHARSSSHNNGFDANYSVHDNLKSRLLSIQELRNPVFAIAVDIGLLDLSTDIWKEQINFLHKYYGRAKFVWMLNHDSSNSIKMELRRKGHTLTVNKPLYKTKMIHILEAIIKERNEELQKKNMTTPRATVKEGDLHESLEIDYTQCDVASSDGSDISEKGGSNPVSACGDKQREKVARSDPSSQHQINNLVGLTMEDNNHRKEELCQSSLNSNDVSANATPKSSSTKQSSTGAQDEDSEYGETRRASSSSRAVIGKKSLEGLRILLAEDTPVIQRVATIMLEKMGAVVVAVGDGQQAVDALNGMPGVEDCIRESLLKERNTRSSQTEILGCPPYDLILMDCQMPKMDGYEATKAIRKSEVGTDLHIPIVALTAHAMSCDEAKCLEVGMDAYLTKPIDFKLMESTILSLTRRTS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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