SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G66130 | AT | Annotation by Michelle Graham. TAIR10: RADIATION SENSITIVE 17 | chr5:26434236-26437091 FORWARD LENGTH=599 | SoyBase | E_val: 0 | ISS |
| GO:0006259 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA metabolic process | SoyBase | N/A | ISS |
| GO:0006281 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA repair | SoyBase | N/A | ISS |
| GO:0006282 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of DNA repair | SoyBase | N/A | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0007049 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell cycle | SoyBase | N/A | ISS |
| GO:0033044 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of chromosome organization | SoyBase | N/A | ISS |
| GO:0043687 | GO-bp | Annotation by Michelle Graham. GO Biological Process: post-translational protein modification | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| KOG1970 | KOG | Checkpoint RAD17-RFC complex, RAD17/RAD24 component | JGI | ISS | |
| PTHR12172 | Panther | CELL CYCLE CHECKPOINT PROTEIN RAD17 | JGI | ISS | |
| PF03215 | PFAM | Rad17 cell cycle checkpoint protein | JGI | ISS | |
| UniRef100_G7LB75 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cell cycle checkpoint protein RAD17 n=1 Tax=Medicago truncatula RepID=G7LB75_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MN27 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MN27_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma16g23360 not represented in the dataset |
Glyma16g23360 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g124500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g23360.1 sequence type=CDS gene model=Glyma16g23360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAAAGCGAAACTGCGTCGTCATTCTGTCATCGGAAGACGAAGAAGAAGACGGTTTCATCGTTCGTTCGTTGAGTTCGAGTCACAGCTATAATACGAAGACGAAGTCGAAGTCGAAGTCCACGTCAGCATCCTCACGTGGGAGGAAGAGGGCACGTGCTTCGGCTTCTCGCTCTCACCTCTCCAAACTGCACGAGATAGACTTATTTGGAGATGACTTCAATGAAGTGTTTACTGGGTCAAAGGTATCCGCTGGTACTCACAGGCACTATGCAGAGGATCTATGGATTGATAAATACAAGCCTTGTTCACTGGAAGAGCTTGCTGTTCACAAGAAAAAGGTTGAAGAAGTTAAGACATGGTTTGAGGAGAGGTTGAAACCTTCAAAGGGTGCCTACTGTAACAATGTTCTTGTCATCAGTGGGCAGGCAGGAGTCGGAAAATCTGCGGCTATTCATGTAATTGCGTCTCATCTAGGAGCAGTGGTTTGTGGGTGGAACACACCTACACCTGTAATTTGGCAAGAACATCTTTATAATTCTGGCACAGGGACAAAATACACATCCAAGTTAGATGAATTTGAAAGTTTTGTTGATAGAGTACGGAAATATGGATTATTGCTAACTTCCCATACTGGGGAGTCAAAGCCTTCCGTCATACTTTTAATAGATGATCTTCCCTTGACTAATGGGAAATCTGCTTTTAGAAGACTTAAAGATTGCTTGCACGTTTTGGTGAATTCAACTCAGATACCCACAGCAATATTGTTCACGGACTATGGAAATGCTGATTCAGCAGATTATAATGCTCGTTGTCTGGAAGAACTGAAGCTATCTCTAGAGAGTTCTGGGGCTTGTAAGGTTGCATTCAATCCAATTACATTGAATACTATGAAGAAGATACTTTTTAGAATATGCCAAATGGAGCATTGTGATGTGACTGCTGAGTATGTTGATCTAATTGCAAAAACTAGTGGAGGTGACATCCGGCATGCAATTACTTCTTTACAGTTTTTCTGCTTGAAACCATCTACCTGCTATCGTGGAGCATTAAAAGAGGAAAGTGATAAACCTGTTAGATCAGATGATGGATATTCCTTGCACTTTGGCAGAGATGAGACATTATCTTTATTTCATGCTTTGGGTAAATTTTTGCACAATAAAAGGGAGAGTGGAGTTTCAACAGAATATGATCAAGATGGATTTCTAATGCAAGAAAGACTTTCAAGATTACCATTAAAAATGGATGTCCCTGAGAAGATTCTTTATCAAGCCCATGTTCAACCTGGTCCAGTTGCTGATTTTCTGCATGAAAATGTTCTGGATTTTTTGAATGACGAAGCAATAGATGATGCATGGACTTTGTCTTCGTATCTGGGTGATGCTGACATTCTTCTTACTAAACTTCGGGGAATGCTAAGTACTTATAATGAGGCAGAGAGTGTTTTACGGTCAGCTGCTGCATCCATAGCTGTTCGTGGGGTGTTATTTGGAAATTCTCATCCACTATCCTCCAGGTGGCATGCAATTCGGCGACCAAAGCTCTGGCAAGTTGAGAAAGCATCATTATACAAGAATGAGGTGGATAGGCTCAGAATCCCTGCCTGTAGACGGTTTAGTTCTTATCATATGTCAATTATGACCACTGAGTACATGCCCATGCTTAAATTGCTTGGAAATGGAGCATGGGGTGGACATCATGAACCAAGTCCGGAATCATTACTGAACTTGGAAATGGAAGATTTTGATTTTGACAAAATGGATTTAGATGGACAATCTAGGGAGATTTCTGATGATGACATAGAAGATTGGTAG
>Glyma16g23360.1 sequence type=predicted peptide gene model=Glyma16g23360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAKRNCVVILSSEDEEEDGFIVRSLSSSHSYNTKTKSKSKSTSASSRGRKRARASASRSHLSKLHEIDLFGDDFNEVFTGSKVSAGTHRHYAEDLWIDKYKPCSLEELAVHKKKVEEVKTWFEERLKPSKGAYCNNVLVISGQAGVGKSAAIHVIASHLGAVVCGWNTPTPVIWQEHLYNSGTGTKYTSKLDEFESFVDRVRKYGLLLTSHTGESKPSVILLIDDLPLTNGKSAFRRLKDCLHVLVNSTQIPTAILFTDYGNADSADYNARCLEELKLSLESSGACKVAFNPITLNTMKKILFRICQMEHCDVTAEYVDLIAKTSGGDIRHAITSLQFFCLKPSTCYRGALKEESDKPVRSDDGYSLHFGRDETLSLFHALGKFLHNKRESGVSTEYDQDGFLMQERLSRLPLKMDVPEKILYQAHVQPGPVADFLHENVLDFLNDEAIDDAWTLSSYLGDADILLTKLRGMLSTYNEAESVLRSAAASIAVRGVLFGNSHPLSSRWHAIRRPKLWQVEKASLYKNEVDRLRIPACRRFSSYHMSIMTTEYMPMLKLLGNGAWGGHHEPSPESLLNLEMEDFDFDKMDLDGQSREISDDDIEDW*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
