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Report for Sequence Feature Glyma16g23275

Feature Type:gene_model
Chromosome:Gm16
Start:27002429
stop:27003233
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma16g23275
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G25980AT Annotation by Michelle Graham. TAIR10: DNA-binding HORMA family protein | chr3:9503232-9504402 FORWARD LENGTH=205 SoyBaseE_val: 3.00E-43ISS
GO:0007094GO-bp Annotation by Michelle Graham. GO Biological Process: mitotic cell cycle spindle assembly checkpoint SoyBaseN/AISS
GO:0007346GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of mitotic cell cycle SoyBaseN/AISS
GO:0008283GO-bp Annotation by Michelle Graham. GO Biological Process: cell proliferation SoyBaseN/AISS
GO:0016572GO-bp Annotation by Michelle Graham. GO Biological Process: histone phosphorylation SoyBaseN/AISS
GO:0042023GO-bp Annotation by Michelle Graham. GO Biological Process: DNA endoreduplication SoyBaseN/AISS
GO:0043161GO-bp Annotation by Michelle Graham. GO Biological Process: proteasomal ubiquitin-dependent protein catabolic process SoyBaseN/AISS
GO:0043248GO-bp Annotation by Michelle Graham. GO Biological Process: proteasome assembly SoyBaseN/AISS
GO:0051510GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of unidimensional cell growth SoyBaseN/AISS
GO:0051788GO-bp Annotation by Michelle Graham. GO Biological Process: response to misfolded protein SoyBaseN/AISS
GO:0000776GO-cc Annotation by Michelle Graham. GO Cellular Compartment: kinetochore SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005635GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nuclear envelope SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0010369GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chromocenter SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
PTHR11842Panther MITOTIC SPINDLE ASSEMBLY CHECKPOINT PROTEIN MAD2 JGI ISS
PTHR11842:SF11Panther MITOTIC SPINDLE ASSEMBLY CHECKPOINT PROTEIN MAD2A JGI ISS
PF02301PFAM HORMA domain JGI ISS
UniRef100_B9RMJ8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Plant mitotic spindle assembly checkpoint protein mad2, putative n=1 Tax=Ricinus communis RepID=B9RMJ8_RICCO SoyBaseE_val: 2.00E-45ISS
UniRef100_UPI000233F04FUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233F04F related cluster n=1 Tax=unknown RepID=UPI000233F04F SoyBaseE_val: 1.00E-63ISS

Expression Patterns of Glyma16g23275
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma16g23275 not represented in the dataset
Glyma16g23275 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma16g23275 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.16g124100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma16g23275
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma16g23275
>Glyma16g23275.1   sequence type=CDS   gene model=Glyma16g23275   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTACAAGAACAGTTGCCAAAGACATAATCACTCTTCGCGGTTTCGCAGCAATCATTAGCGAGTTCTTCGAAATTAGATATGCTGCCAACAACTTTATGACGGTTAAGAAATACGGCCTCCCCATGTTGCTAACGGAATATGAGGGTGTCAAATCTTTTCTAGCAAATCTAACTACTCAGCTCTCTGAATTGCTTGAAGCTGGCAAGTTGCAGAGGGTGGTCCTTGTTATAATGAGCAAGGCCACTAGTGAAGTGCTTGAAAGGTGGAACTTCAACATTGAGACTAACAGTGAGGTTGTTGAGAATGGGTGGGTAACTTGA
Predicted protein sequences of Glyma16g23275
>Glyma16g23275.1   sequence type=predicted peptide   gene model=Glyma16g23275   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATRTVAKDIITLRGFAAIISEFFEIRYAANNFMTVKKYGLPMLLTEYEGVKSFLANLTTQLSELLEAGKLQRVVLVIMSKATSEVLERWNFNIETNSEVVENGWVT*






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