Glyma16g23260 - SoyBase

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Report for Sequence Feature Glyma16g23260

Feature Type:	gene_model
Chromosome:	Gm16
Start:	26993368
stop:	26995585
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g23260

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G75900	AT	Annotation by Michelle Graham. TAIR10: GDSL-like Lipase/Acylhydrolase superfamily protein \| chr1:28499179-28500943 FORWARD LENGTH=364	SoyBase	E_val: 2.00E-117	ISS
GO:0006629	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid metabolic process	SoyBase	N/A	ISS
GO:0019761	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucosinolate biosynthetic process	SoyBase	N/A	ISS
GO:0019953	GO-bp	Annotation by Michelle Graham. GO Biological Process: sexual reproduction	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0016298	GO-mf	Annotation by Michelle Graham. GO Molecular Function: lipase activity	SoyBase	N/A	ISS
GO:0016746	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring acyl groups	SoyBase	N/A	ISS
GO:0016788	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on ester bonds	SoyBase	N/A	ISS
PTHR22835	Panther	ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN	JGI		ISS
PTHR22835:SF39	Panther	LATERAL SIGNALING TARGET PROTEIN 2	JGI		ISS
PF00657	PFAM	GDSL-like Lipase/Acylhydrolase	JGI		ISS
UniRef100_G7LB70	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: GDSL esterase/lipase n=1 Tax=Medicago truncatula RepID=G7LB70_MEDTR	SoyBase	E_val: 1.00E-163	ISS
UniRef100_UPI000233F04E	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233F04E related cluster n=1 Tax=unknown RepID=UPI000233F04E	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma16g23260

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma16g23260 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g124000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g23260

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma16g23260

Limit To All Plant Sequences

>Glyma16g23260.2   sequence type=CDS   gene model=Glyma16g23260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTAGTTATGCATGTAAACAGCTTTCATCCCTTAAATCTCTTGATGCATGCCTTTTAGTTGTTATGTTTTATCCATTTGCTGTAACAGCCACATCACAAACAAAATATAGGAACTTTACATTTCCTGCTCTTATAGCTTTTGGTGATTCAGTCTTGGATACTGGGAACAACAATTATATTGAAACAATAGTGAAGGCAAATTTCAAACCATATGGGAGGGATTTCATTGGAGGACAAGCCACGGGAAGGTTTAGCAATGGCAGGATCCCTTCAGACTTTTTAGCTGAAATACTTGGAATAAAGGAGACCTTGCCACCCTATCTTGATCCAAATCTGAAGGTCGAAGACCTCTTAACTGGGGTGTGTTTTGCCTCTGCCGGCTCAGGATATGATCATCTAACAGTAGAAATAGCATCAGTGTTGTCAGTGGAGGATCAACTGAATATGTTCAAAGGATACATAGGAAAACTGAAGGCAGCTGTGGGAGAAGCAAGGACAGCTCTCATTCTAGCAAAAAGCATATTTATCATCAGCATGGGAAGTAATGACATTGCAGGAACATATTTTATGACATCATTCCGCAGAGAGTATAATATTCAAGAGTATACAAGTATGCTAGTCAATATATCTTCAAATTTTCTACAGGAACTATATAAATTTGGAGCAAGAAAGATTGGAGTAGTGAGCCTATCACCAATAGGATGTGTGCCGTTGCAAAGAACAATAGGGGGAGGCAAAGAAAGGGATTGTGTAGAATCAATAAACCAGGCAGCCACGGTCTACAACTCCAAGCTTTCTTCTTCAATAATGGCTCTCAACAAAAAGCTTTCAGAAGCTAGACTTGTCTACCTTGAAAACTATAGTGAATTCAATAAACTAATCCAACACCACAAACAATTCGGATTTGAAGTGGAGGATAGTGCATGTTGTGGACCAGGCCCTGTCTGTAATTCTTTGTCCTTTAAAATATGTGAAGATGCAACTAAATATGTGTTCTGGGACAGTGTTCACCCCACAGAGCGAACTTATAATATACTTGTCTCAGATATTGTAAAAAAGAACATTCATAAGTTTGTTTGA

Predicted protein sequences of Glyma16g23260

Limit To All Plant Sequences

>Glyma16g23260.2   sequence type=predicted peptide   gene model=Glyma16g23260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTSYACKQLSSLKSLDACLLVVMFYPFAVTATSQTKYRNFTFPALIAFGDSVLDTGNNNYIETIVKANFKPYGRDFIGGQATGRFSNGRIPSDFLAEILGIKETLPPYLDPNLKVEDLLTGVCFASAGSGYDHLTVEIASVLSVEDQLNMFKGYIGKLKAAVGEARTALILAKSIFIISMGSNDIAGTYFMTSFRREYNIQEYTSMLVNISSNFLQELYKFGARKIGVVSLSPIGCVPLQRTIGGGKERDCVESINQAATVYNSKLSSSIMALNKKLSEARLVYLENYSEFNKLIQHHKQFGFEVEDSACCGPGPVCNSLSFKICEDATKYVFWDSVHPTERTYNILVSDIVKKNIHKFV*

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