SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G01160 | AT | Annotation by Michelle Graham. TAIR10: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NUC153 (InterPro:IPR012580); Has 36638 Blast hits to 21323 proteins in 1057 species: Archae - 109; Bacteria - 2369; Metazoa - 13796; Fungi - 4858; Plants - 1657; Viruses - 489; Other Eukaryotes - 13360 (source: NCBI BLink). | chr3:54655-57449 REVERSE LENGTH=713 | SoyBase | E_val: 9.00E-179 | ISS |
| GO:0000741 | GO-bp | Annotation by Michelle Graham. GO Biological Process: karyogamy | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009560 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo sac egg cell differentiation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG2318 | KOG | Uncharacterized conserved protein | JGI | ISS | |
| PTHR12202 | Panther | UNCHARACTERIZED | JGI | ISS | |
| PF08159 | PFAM | NUC153 domain | JGI | ISS | |
| UniRef100_G7JDZ9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Pre-rRNA-processing protein ESF1 n=1 Tax=Medicago truncatula RepID=G7JDZ9_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1MN15 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MN15_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma16g23150 not represented in the dataset |
Glyma16g23150 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma02g05070 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.16g122800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma16g23150.3 sequence type=transcript gene model=Glyma16g23150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TAAAATATATTTAGGTGTATTTTTTAAGTATGTTTTATAAATTTGAAATTAACTAAAAGGTTGACGCAGAGGTAATCCGTGAAAAATTTGAAATTGAGAAGGAAAAAGGGAACCCTATTGCTATTTGCTGGTCCTATTTCACCACACTCTGCGCCGTTCTTCTTCCCCGGTTTCGTCCCTCTGTTCTGCTGAGCGACGATTTGTTCTCTGGCACAACCGTTCCAGCACACAATCGAGCGGTGAAAAGTGTTCTGCTTACTCGGGCAATGCCAATATACGATGCTTGTTTTGTTGATGGCGATCCTACTCGAAACTCAGAACTCTCGAAACCTTTGTTTTCTGCAGCGTGCTGCTGCCTATTCATGTGTTCAACAGTGTAGCAGTTAGCTCATTGGTTTTTGGGTGATTCATTCATTTGAATTGGAAGCTGTGAAAAATTCAGTGTTCAACTAGAGCATAATGGGATCCAAAAATGCAAACGGGAAGAACCACAAGGACAAAAGGAAGAAGTTTAAGGATAATTTGAATTCAAATCATTCATCCACTGGTGATGCCAAGGTTATCATTATCAGTGATCCTCGATATTCAAAGGCTCACACGGATCCTCGGTTTCGTGAGGCTCCAAAGCGTGAAACGAAGGTGGCCATTGACTCTCGCTTCAACCGCATGTTCACTCACAAGAGTTTTTTGCCCTCTTCTGCTCTTATTGACAAGAGAGGCAAGCCCAAGAACAACCCAACCTCTCAGCTTGGTTCTCTGCGCCATTACTACAAAGTTGATGAAAAGGAAGTTGAGCAGAGTAGTGATGAGGAAGAAGATAATGAAGAGGAATTGGTGAAAGCCAATCGAATGAAACCGGAGAGTGACAAAGGAACTGAATTAGAAGAGACCAGTGAATCTGAGTCAGAAGAAACCAGTGAATCAGAGTCTGATGTGGACACAGATACAGATGAAGGTGCAGATGAGGAAGTTTACGAGGAAGAAGCCTCTGATGTCCATGAAGACATAGCAACGATTGACAAAGAAACTCATAGGGTTGCGGTTGTTAACATGGACTGGAGATATGTTAAGGCTGTTGATTTGTATGTATTGTTAAGCTCATTTGTCCCACCTAATGGACTGATCAAATCGGTAACGGTCTATCCATCTGAGTTTGGTCTTCAACGTATGAAAGAGGAGGAAGTTCATGGACCTATTGGTCTATTTGATGATGAAGATGAAAAAAATGATGAAGATAGCAGCAATGATGACATTGACAATGAGAAACTGCGTGCATATGAGAAGAGCAGGATGCGGTACTATTTTGCTGTGGTGGAATGTGACTCAAGTGCCACAGCAAATTACATTTACAAAGAATGTGATGGTCTTGAGTTAAAACAGTCATCAAATGCACTTGATTTAAGGTTTATTCCAGACAACATGGAATTCAAACACCCGCCTCGGGATGTTGCTACTGAGGTACCTGCAAATTATGAGTGTAAAGATTTCTATTCTCGAGCACTTCAGCACAGTGAGGTTAATCTTACTTGGGATGATGATGAACCTCTTCGTGCAAAGACATTGAAACAGAAATTCACTGATGATCAGCTAGCTCAGATGGAAGTGAAGGAATTCTTAACATCTGATGAGAGTGAAAGTGATGATAGCAAGGATAATAATGAGACAGATGATCAGCCTGATAAAAGGGCAAAAAAACGAGCTAAGTACCGTGCTTTGCTCCAGGCCGGTGATGATTCAGATGGAGGCAATGAACATGATAATGTCCAGAATATGGAGGTCACCTTCAATACAGGTTTGGAAGATTTAAGCAAACATATTATGGAAAAGAAGGATAAAAAATCAGAAACAGTTTGGGATGCACATTTGAGGAAAAAATGTGAGAAAAAGAAAACCAGGAAAAACAAAAGAAAGTATTCATCAGATGATGATGATAGCGATGATACTGATCAAGAGGCAACTGAAGAAGCAGATGACTTCTTCATTGAGGAGCCTGCTGTTAAGAAGAGGAAGAAGCTTGAAAATAAAGACGAAGAACCTAAAGAGATGAATGGGCTAGACGAAGCAAGCAAAGAGGAGCTTGAACTGCTGCTTGCTGATGATAAGGGGACAGATACTGGTCTCAAGGGATATAATCTAAAATTTAAAAAAGGCAAGGGCAAAAGGACGGAGAATAGTATTGATGAGGAGAAGATACCAAGTAATGCATACGATGATCCACGTTTTTCAGCGCTTTTCTCACCTGACTATGCAATTGACCCTACCAATCCACAATTTAAAAGGAGTGCAACATATGCCAGGCAGCTAGCACAGAAGCAACAGAAGGATAATGCAGATCCACCAGCGGAAAGGGAGCCTACAAAAGTAAAAGGAATGCAATTGTCTTTTGATGATTCTGGCATGATGAAGAAGGGTGAGGAAGAAAGATTAGATGCTTTGAAGTCAACGAAAGATAAATATGAATTATCATCATTGGTTAAATCAATTAAGATGAAATCAAAGCAAGTTCAGTTACCCTCTGATGATAAGACAATGAAAGATGGAAAATCTCACATTAAAGGTATGAAGAAAAAGAGGCACTAGTTCTGAACCTTGTGGTTCAATTAACACACTTGAATGGAGGGGAATTGGCCTCTTTTATGTGTTGTAGAAACCCAGCAGGGGAAAAAGGATCTTAGCAGAATTATGAAAGAAGTGTAGACAGAAGATTAGCAATGGATGTTCAGGTAGTTTAATCTTCTGCCAAGACGTTGAATGTCTCGTTCCTGTTCAAATCATCCATTTTTGTTTTGTTGCAACTAATTGTAGTACGGCATAAATTAATGAGTTTGATATAGTCTTGAAGCTTGCATCCGTTTTGTGGTTGTGCCATGATCACCATCATTTTATTTGCAGTTATAGCTTTATGTCAACCTAGATTTGAAAATATTCCTTTACAATTGACTGCTGTGTTTTCTCTTCTGGGTTGTATAATAAAATTATTTTTCTTGTTAAGTTTGCACATATCAAAGATTAAGTTGTATTTTGGTGATTTTACTAGATCAAGTGTATGTAGGATGCCAGCTAACTGCTATTAACGTACTCCTTCCGGCCCTTAATATAAGACACCTTTTAGAAGGAATTGATGGTAATTTTT
>Glyma16g23150.2 sequence type=CDS gene model=Glyma16g23150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGATCCAAAAATGCAAACGGGAAGAACCACAAGGACAAAAGGAAGAAGTTTAAGGATAATTTGAATTCAAATCATTCATCCACTGGTGATGCCAAGGTTATCATTATCAGTGATCCTCGATATTCAAAGGCTCACACGGATCCTCGGTTTCGTGAGGCTCCAAAGCGTGAAACGAAGGTGGCCATTGACTCTCGCTTCAACCGCATGTTCACTCACAAGAGTTTTTTGCCCTCTTCTGCTCTTATTGACAAGAGAGGCAAGCCCAAGAACAACCCAACCTCTCAGCTTGGTTCTCTGCGCCATTACTACAAAGTTGATGAAAAGGAAGTTGAGCAGAGTAGTGATGAGGAAGAAGATAATGAAGAGGAATTGGTGAAAGCCAATCGAATGAAACCGGAGAGTGACAAAGGAACTGAATTAGAAGAGACCAGTGAATCTGAGTCAGAAGAAACCAGTGAATCAGAGTCTGATGTGGACACAGATACAGATGAAGGTGCAGATGAGGAAGTTTACGAGGAAGAAGCCTCTGATGTCCATGAAGACATAGCAACGATTGACAAAGAAACTCATAGGGTTGCGGTTGTTAACATGGACTGGAGATATGTTAAGGCTGTTGATTTGTATGTATTGTTAAGCTCATTTGTCCCACCTAATGGACTGATCAAATCGGTAACGGTCTATCCATCTGAGTTTGGTCTTCAACGTATGAAAGAGGAGGAAGTTCATGGACCTATTGGTCTATTTGATGATGAAGATGAAAAAAATGATGAAGATAGCAGCAATGATGACATTGACAATGAGAAACTGCGTGCATATGAGAAGAGCAGGATGCGGTACTATTTTGCTGTGGTGGAATGTGACTCAAGTGCCACAGCAAATTACATTTACAAAGAATGTGATGGTCTTGAGTTAAAACAGTCATCAAATGCACTTGATTTAAGGTTTATTCCAGACAACATGGAATTCAAACACCCGCCTCGGGATGTTGCTACTGAGGTACCTGCAAATTATGAGTGTAAAGATTTCTATTCTCGAGCACTTCAGCACAGTGAGGTTAATCTTACTTGGGATGATGATGAACCTCTTCGTGCAAAGACATTGAAACAGAAATTCACTGATGATCAGCTAGCTCAGATGGAAGTGAAGGAATTCTTAACATCTGATGAGAGTGAAAGTGATGATAGCAAGGATAATAATGAGACAGATGATCAGCCTGATAAAAGGGCAAAAAAACGAGCTAAGTACCGTGCTTTGCTCCAGGCCGGTGATGATTCAGATGGAGGCAATGAACATGATAATGTCCAGAATATGGAGGTCACCTTCAATACAGGTTTGGAAGATTTAAGCAAACATATTATGGAAAAGAAGGATAAAAAATCAGAAACAGTTTGGGATGCACATTTGAGGAAAAAATGTGAGAAAAAGAAAACCAGGAAAAACAAAAGAAAGTATTCATCAGATGATGATGATAGCGATGATACTGATCAAGAGGCAACTGAAGAAGCAGATGACTTCTTCATTGAGGAGCCTGCTGTTAAGAAGAGGAAGAAGCTTGAAAATAAAGACGAAGAACCTAAAGAGATGAATGGGCTAGACGAAGCAAGCAAAGAGGAGCTTGAACTGCTGCTTGCTGATGATAAGGGGACAGATACTGGTCTCAAGGGATATAATCTAAAATTTAAAAAAGGCAAGGGCAAAAGGACGGAGAATAGTATTGATGAGGAGAAGATACCAAGTAATGCATACGATGATCCACGTTTTTCAGCGCTTTTCTCACCTGACTATGCAATTGACCCTACCAATCCACAATTTAAAAGGAGTGCAACATATGCCAGGCAGCTAGCACAGAAGCAACAGAAGGATAATGCAGATCCACCAGCGGAAAGGGAGCCTACAAAAGTAAAAGGAATGCAATTGTCTTTTGATGATTCTGGCATGATGAAGAAGGGTGAGGAAGAAAGATTAGATGCTTTGAAGTCAACGAAAGATAAATATGAATTATCATCATTGGTTAAATCAATTAAGATGAAATCAAAGCAAGTTCAGTTACCCTCTGATGATAAGACAATGAAAGATGGAAAATCTCACATTAAAGGTATGAAGAAAAAGAGGCACTAG >Glyma16g23150.3 sequence type=CDS gene model=Glyma16g23150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGATCCAAAAATGCAAACGGGAAGAACCACAAGGACAAAAGGAAGAAGTTTAAGGATAATTTGAATTCAAATCATTCATCCACTGGTGATGCCAAGGTTATCATTATCAGTGATCCTCGATATTCAAAGGCTCACACGGATCCTCGGTTTCGTGAGGCTCCAAAGCGTGAAACGAAGGTGGCCATTGACTCTCGCTTCAACCGCATGTTCACTCACAAGAGTTTTTTGCCCTCTTCTGCTCTTATTGACAAGAGAGGCAAGCCCAAGAACAACCCAACCTCTCAGCTTGGTTCTCTGCGCCATTACTACAAAGTTGATGAAAAGGAAGTTGAGCAGAGTAGTGATGAGGAAGAAGATAATGAAGAGGAATTGGTGAAAGCCAATCGAATGAAACCGGAGAGTGACAAAGGAACTGAATTAGAAGAGACCAGTGAATCTGAGTCAGAAGAAACCAGTGAATCAGAGTCTGATGTGGACACAGATACAGATGAAGGTGCAGATGAGGAAGTTTACGAGGAAGAAGCCTCTGATGTCCATGAAGACATAGCAACGATTGACAAAGAAACTCATAGGGTTGCGGTTGTTAACATGGACTGGAGATATGTTAAGGCTGTTGATTTGTATGTATTGTTAAGCTCATTTGTCCCACCTAATGGACTGATCAAATCGGTAACGGTCTATCCATCTGAGTTTGGTCTTCAACGTATGAAAGAGGAGGAAGTTCATGGACCTATTGGTCTATTTGATGATGAAGATGAAAAAAATGATGAAGATAGCAGCAATGATGACATTGACAATGAGAAACTGCGTGCATATGAGAAGAGCAGGATGCGGTACTATTTTGCTGTGGTGGAATGTGACTCAAGTGCCACAGCAAATTACATTTACAAAGAATGTGATGGTCTTGAGTTAAAACAGTCATCAAATGCACTTGATTTAAGGTTTATTCCAGACAACATGGAATTCAAACACCCGCCTCGGGATGTTGCTACTGAGGTACCTGCAAATTATGAGTGTAAAGATTTCTATTCTCGAGCACTTCAGCACAGTGAGGTTAATCTTACTTGGGATGATGATGAACCTCTTCGTGCAAAGACATTGAAACAGAAATTCACTGATGATCAGCTAGCTCAGATGGAAGTGAAGGAATTCTTAACATCTGATGAGAGTGAAAGTGATGATAGCAAGGATAATAATGAGACAGATGATCAGCCTGATAAAAGGGCAAAAAAACGAGCTAAGTACCGTGCTTTGCTCCAGGCCGGTGATGATTCAGATGGAGGCAATGAACATGATAATGTCCAGAATATGGAGGTCACCTTCAATACAGGTTTGGAAGATTTAAGCAAACATATTATGGAAAAGAAGGATAAAAAATCAGAAACAGTTTGGGATGCACATTTGAGGAAAAAATGTGAGAAAAAGAAAACCAGGAAAAACAAAAGAAAGTATTCATCAGATGATGATGATAGCGATGATACTGATCAAGAGGCAACTGAAGAAGCAGATGACTTCTTCATTGAGGAGCCTGCTGTTAAGAAGAGGAAGAAGCTTGAAAATAAAGACGAAGAACCTAAAGAGATGAATGGGCTAGACGAAGCAAGCAAAGAGGAGCTTGAACTGCTGCTTGCTGATGATAAGGGGACAGATACTGGTCTCAAGGGATATAATCTAAAATTTAAAAAAGGCAAGGGCAAAAGGACGGAGAATAGTATTGATGAGGAGAAGATACCAAGTAATGCATACGATGATCCACGTTTTTCAGCGCTTTTCTCACCTGACTATGCAATTGACCCTACCAATCCACAATTTAAAAGGAGTGCAACATATGCCAGGCAGCTAGCACAGAAGCAACAGAAGGATAATGCAGATCCACCAGCGGAAAGGGAGCCTACAAAAGTAAAAGGAATGCAATTGTCTTTTGATGATTCTGGCATGATGAAGAAGGGTGAGGAAGAAAGATTAGATGCTTTGAAGTCAACGAAAGATAAATATGAATTATCATCATTGGTTAAATCAATTAAGATGAAATCAAAGCAAGTTCAGTTACCCTCTGATGATAAGACAATGAAAGATGGAAAATCTCACATTAAAGGTATGAAGAAAAAGAGGCACTAG
>Glyma16g23150.2 sequence type=predicted peptide gene model=Glyma16g23150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGSKNANGKNHKDKRKKFKDNLNSNHSSTGDAKVIIISDPRYSKAHTDPRFREAPKRETKVAIDSRFNRMFTHKSFLPSSALIDKRGKPKNNPTSQLGSLRHYYKVDEKEVEQSSDEEEDNEEELVKANRMKPESDKGTELEETSESESEETSESESDVDTDTDEGADEEVYEEEASDVHEDIATIDKETHRVAVVNMDWRYVKAVDLYVLLSSFVPPNGLIKSVTVYPSEFGLQRMKEEEVHGPIGLFDDEDEKNDEDSSNDDIDNEKLRAYEKSRMRYYFAVVECDSSATANYIYKECDGLELKQSSNALDLRFIPDNMEFKHPPRDVATEVPANYECKDFYSRALQHSEVNLTWDDDEPLRAKTLKQKFTDDQLAQMEVKEFLTSDESESDDSKDNNETDDQPDKRAKKRAKYRALLQAGDDSDGGNEHDNVQNMEVTFNTGLEDLSKHIMEKKDKKSETVWDAHLRKKCEKKKTRKNKRKYSSDDDDSDDTDQEATEEADDFFIEEPAVKKRKKLENKDEEPKEMNGLDEASKEELELLLADDKGTDTGLKGYNLKFKKGKGKRTENSIDEEKIPSNAYDDPRFSALFSPDYAIDPTNPQFKRSATYARQLAQKQQKDNADPPAEREPTKVKGMQLSFDDSGMMKKGEEERLDALKSTKDKYELSSLVKSIKMKSKQVQLPSDDKTMKDGKSHIKGMKKKRH* >Glyma16g23150.3 sequence type=predicted peptide gene model=Glyma16g23150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGSKNANGKNHKDKRKKFKDNLNSNHSSTGDAKVIIISDPRYSKAHTDPRFREAPKRETKVAIDSRFNRMFTHKSFLPSSALIDKRGKPKNNPTSQLGSLRHYYKVDEKEVEQSSDEEEDNEEELVKANRMKPESDKGTELEETSESESEETSESESDVDTDTDEGADEEVYEEEASDVHEDIATIDKETHRVAVVNMDWRYVKAVDLYVLLSSFVPPNGLIKSVTVYPSEFGLQRMKEEEVHGPIGLFDDEDEKNDEDSSNDDIDNEKLRAYEKSRMRYYFAVVECDSSATANYIYKECDGLELKQSSNALDLRFIPDNMEFKHPPRDVATEVPANYECKDFYSRALQHSEVNLTWDDDEPLRAKTLKQKFTDDQLAQMEVKEFLTSDESESDDSKDNNETDDQPDKRAKKRAKYRALLQAGDDSDGGNEHDNVQNMEVTFNTGLEDLSKHIMEKKDKKSETVWDAHLRKKCEKKKTRKNKRKYSSDDDDSDDTDQEATEEADDFFIEEPAVKKRKKLENKDEEPKEMNGLDEASKEELELLLADDKGTDTGLKGYNLKFKKGKGKRTENSIDEEKIPSNAYDDPRFSALFSPDYAIDPTNPQFKRSATYARQLAQKQQKDNADPPAEREPTKVKGMQLSFDDSGMMKKGEEERLDALKSTKDKYELSSLVKSIKMKSKQVQLPSDDKTMKDGKSHIKGMKKKRH*
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