Glyma16g22630 - SoyBase

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Report for Sequence Feature Glyma16g22630

Feature Type:	gene_model
Chromosome:	Gm16
Start:	26123352
stop:	26127806
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g22630

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G35640	AT	Annotation by Michelle Graham. TAIR10: serine acetyltransferase 3;2 \| chr4:16905755-16907977 REVERSE LENGTH=355	SoyBase	E_val: 2.00E-142	ISS
GO:0000103	GO-bp	Annotation by Michelle Graham. GO Biological Process: sulfate assimilation	SoyBase	N/A	ISS
GO:0006535	GO-bp	Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process from serine	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0009001	GO-mf	Annotation by Michelle Graham. GO Molecular Function: serine O-acetyltransferase activity	SoyBase	N/A	ISS
GO:0016407	GO-mf	Annotation by Michelle Graham. GO Molecular Function: acetyltransferase activity	SoyBase	N/A	ISS
GO:0016740	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity	SoyBase	N/A	ISS
KOG4750	KOG	Serine O-acetyltransferase	JGI		ISS
PTHR23416	Panther	SIALIC ACID SYNTHASE-RELATED	JGI		ISS
PTHR23416:SF11	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF06426	PFAM	Serine acetyltransferase, N-terminal	JGI		ISS
UniRef100_G7K010	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Serine acetyltransferase n=1 Tax=Medicago truncatula RepID=G7K010_MEDTR	SoyBase	E_val: 3.00E-155	ISS
UniRef100_UPI000233EEEA	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233EEEA related cluster n=1 Tax=unknown RepID=UPI000233EEEA	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma16g22630

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma16g22630 not represented in the dataset	Glyma16g22630 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma16g22630

Paralog	Evidence	Comments
Glyma02g04770	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma16g22630 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g118800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g22630

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma16g22630

Limit To All Plant Sequences

>Glyma16g22630.3   sequence type=transcript   gene model=Glyma16g22630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATGACCCTTTTGGTTGCATGTACCTTCCTTCATTCCCACCCTTTTCCATTGTTCATTATAAATAATTGTTGCACTTTGTTTCTGGCAGCAAACACAACTCCACCACTATTATACAACTATAATAATAACGGCTGCATAGATAGCACACTTAGCCATTAGTATCCAACTAAAACCGCAACACTTTGATTTTTCTCTTATCTCCTTTTCTCTTCTATAAATATGGCTCATCTGAGCCACAAGACCTTGGTTTATCTTCCAGAAATGAGGCCTGAACATGAAGCTGAGGAAGGCCAACCCAGAAAAAGTCTTGGTTCTTTTTCTTCTTGGCCTCATCGTTTGGAGAATGTTTTCCCCGTTTATGCCATGGGAACTTCCAACCCTGCAGTCTTGGATTCTTCACTTCACACTTCTGATTGTCTTGATCCTATTTGGGATGCTGTCAGAGAAGAAGCCAAGTTAGAGGCAGAAAAGGAGCCAATTTTGAGTAGCTTCTTCTATGCCACTATTCTGTCTCATGATTGCTTGGAGCAAGCATTGGCTTTTGCTCTTGCCAACCGACTCCAAAACCCTACTCTTTTGGCAACTCAGCTGATGGATATATTTTCTAATGTGATGAAGCATGATAAAGGTATCCAGCAATCCATTCGCTTGGATATTCAGGCATTTAAAGATCGGGATCCTGCTTGTTTGTCATATTGCTCAGCACTTTTATATATGAAGGGCTACCAGTCTTTGCAAGTATATCGAGTAGCTCATGCTTTGTGGGGCCAGGGACGCAAAGTTTTGGCCTCAGCTTTGCAAAGTCGAGTTAGTGAGGTTTTTGGAGTTGATATACATCCAGCTGCAAAAATTGGGGATGGAATTTTAGTAGATCATGGGACAGGTGTTGTTATTGGTGAAACAGTTGTTGTTGGAAACAGAGTTTCATTGATGCAAGGTGTAACTTTTGGCGGCACGGGTAAGGAAACAGGTGATCGGCATCCCAAAATTTCTGAAGGTGTTCTAATTGGAGCACATGCAACTATACTTGGGAATATAACAATTGGTGAATGTGTGATGATAGCTGCTGGCTCCCTTGTGTTACAAGAGGTTCCTCCTCACAGCATTGTGGCTGGTGTACCAGCAAAGGTTATTGGAAGAGTACATGAGCATTATCCATCCTTAACCATGCAGCAAGATGAAAATAAGCATCTATCGGAGGAGTTTTTCTATAGCAAAGATGAAACCACAGAAAATTACTACATAAATTGAGGTGCTGAAAAAAAATAGAGGCAAGTGAAGAGAATTGCAAATAGAAATCCCGGGTTGAAGTACCTTAGATTTTTCACTGAAAATTTCAAGCTTCAACAAGAGCTTGGTACATTGAGAATTTTGGAGCACAATCTCAGTCATGGAAAGTATTATTCTTAGCATTGGAGTCTCTCAACAGGGGATTTCTCAGCCTTTGCATTCTAAAAGGATACATAACCCTATAAATAAAATTTCAGCAAAGAAAAGGTGTTTGAAGTTTGAACTCTCAAACTCAAATAGTAGGAGTTGAGTACAATAAGTAGAAATAAGTAGGCCCACTTAAGCCCAAAACCAGAGAACAATTGATAGATAAAATGATCGAATGATGAAGCTCAAAAGATGTCATGTAGATGTTTCATCAGTTGTAAATTTGTAATATACCTCCCAAGTATTTGTATCAAATGCAAAAACAAGAATAATTGATAAAATGATTGAGACGCATTGAAATACAGTGGAAGTGCAGAGAAGGGATGAAGTGTATGGAAAAAAAATCATTTCCCTTCGTTTGGTAGCAGTGAATTAGTTAAGAAACATTCAAATTTGCGGTGGAGTGTACACAAAAATATTTCTTCACAAATATGCCAAGAAGTACACTTTCAAACTCAGATTATTCGTACCTACATAATCGATTAACTGATTATGATGATGATCTTTCTCTTTATTTAATTTTTATTTTTCTTAAAACAAA

>Glyma16g22630.4   sequence type=transcript   gene model=Glyma16g22630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATGACCCTTTTGGTTGCATGTACCTTCCTTCATTCCCACCCTTTTCCATTGTTCATTATAAATAATTGTTGCACTTTGTTTCTGGCAGCAAACACAACTCCACCACTATTATACAACTATAATAATAACGGCTGCATAGATAGCACACTTAGCCATTAGTATCCAACTAAAACCGCAACACTTTGATTTTTCTCTTATCTCCTTTTCTCTTCTATAAATATGGCTCATCTGAGCCACAAGACCTTGGTTTATCTTCCAGAAATGAGGCCTGAACATGAAGCTGAGGAAGGCCAACCCAGAAAAAGTCTTGGTTCTTTTTCTTCTTGGCCTCATCGTTTGGAGAATGTTTTCCCCGTTTATGCCATGGGAACTTCCAACCCTGCAGTCTTGGATTCTTCACTTCACACTTCTGATTGTCTTGATCCTATTTGGGATGCTGTCAGAGAAGAAGCCAAGTTAGAGGCAGAAAAGGAGCCAATTTTGAGTAGCTTCTTCTATGCCACTATTCTGTCTCATGATTGCTTGGAGCAAGCATTGGCTTTTGCTCTTGCCAACCGACTCCAAAACCCTACTCTTTTGGCAACTCAGCTGATGGATATATTTTCTAATGTGATGAAGCATGATAAAGGTATCCAGCAATCCATTCGCTTGGATATTCAGGCATTTAAAGATCGGGATCCTGCTTGTTTGTCATATTGCTCAGCACTTTTATATATGAAGGGCTACCAGTCTTTGCAAGTATATCGAGTAGCTCATGCTTTGTGGGGCCAGGGACGCAAAGTTTTGGCCTCAGCTTTGCAAAGTCGAGTTAGTGAGGTTTTTGGAGTTGATATACATCCAGCTGCAAAAATTGGGGATGGAATTTTAGTAGATCATGGGACAGGTGTTGTTATTGGTGAAACAGTTGTTGTTGGAAACAGAGTTTCATTGATGCAAGGTGTAACTTTTGGCGGCACGGGTAAGGAAACAGGTGATCGGCATCCCAAAATTTCTGAAGGTGTTCTAATTGGAGCACATGCAACTATACTTGGGAATATAACAATTGGTGAATGTGTGATGATAGCTGCTGGCTCCCTTGTGTTACAAGAGGTTCCTCCTCACAGCATTGTGGCTGGTGTACCAGCAAAGGTTATTGGAAGAGTACATGAGCATTATCCATCCTTAACCATGCAGCAAGGTAAGCAATAAGAGCATGCCTTGCCATTGATATTGATAATTCCTTTCTTGTATTGTTATTAAGTGGGTTAAAATTTAGATTTTTGACGAACTTCTCCAAAGATACTATTTGATATTGAATTTGAATGTATATAACACTTTGAAATGAATGGACAGATGAAAATAAGCATCTATCGGAGGAGTTTTTCTATAGCAAAGATGAAACCACAGAAAATTACTACATAAATTGAGGTGCTGAAAAAAAATAGAGGCAAGTGAAGAGAATTGCAAATAGAAATCCCGGGTTGAAGTACCTTAGATTTTTCACTGAAAATTTCAAGCTTCAACAAGAGCTTGGTACATTGAGAATTTTGGAGCACAATCTCAGTCATGGAAAGTATTATTCTTAGCATTGGAGTCTCTCAACAGGGGATTTCTCAGCCTTTGCATTCTAAAAGGATACATAACCCTATAAATAAAATTTCAGCAAAGAAAAGGTGTTTGAAGTTTGAACTCTCAAACTCAAATAGTAGGAGTTGAGTACAATAAGTAGAAATAAGTAGGCCCACTTAAGCCCAAAACCAGAGAACAATTGATAGATAAAATGATCGAATGATGAAGCTCAAAAGATGTCATGTAGATGTTTCATCAGTTGTAAATTTGTAATATACCTCCCAAGTATTTGTATCAAATGCAAAAACAAGAATAATTGATAAAATGATTGAGACGCATTGAAATACAGTGGAAGTGCAGAGAAGGGATGAAGTGTATGGAAAAAAAATCATTTCCCTTCGTTTGGTAGCAGTGAATTAGTTAAGAAACATTCAAATTTGCGGTGGAGTGTACACAAAAATATTTCTTCACAAATATGCCAAGAAGTACACTTTCAAACTCAGATTATTCGTACCTACATAATCGATTAACTGATTATGATGATGATCTTTCTCTTTATTTAATTTTTATTTTTCTTAAAACAAA

Coding sequences of Glyma16g22630

Limit To All Plant Sequences

>Glyma16g22630.2   sequence type=CDS   gene model=Glyma16g22630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCATCTGAGCCACAAGACCTTGGTTTATCTTCCAGAAATGAGGCCTGAACATGAAGCTGAGGAAGGCCAACCCAGAAAAAGTCTTGGTTCTTTTTCTTCTTGGCCTCATCGTTTGGAGAATGTTTTCCCCGTTTATGCCATGGGAACTTCCAACCCTGCAGTCTTGGATTCTTCACTTCACACTTCTGATTGTCTTGATCCTATTTGGGATGCTGTCAGAGAAGAAGCCAAGTTAGAGGCAGAAAAGGAGCCAATTTTGAGTAGCTTCTTCTATGCCACTATTCTGTCTCATGATTGCTTGGAGCAAGCATTGGCTTTTGCTCTTGCCAACCGACTCCAAAACCCTACTCTTTTGGCAACTCAGCTGATGGATATATTTTCTAATGTGATGAAGCATGATAAAGGTATCCAGCAATCCATTCGCTTGGATATTCAGGCATTTAAAGATCGGGATCCTGCTTGTTTGTCATATTGCTCAGCACTTTTATATATGAAGGGCTACCAGTCTTTGCAAGTATATCGAGTAGCTCATGCTTTGTGGGGCCAGGGACGCAAAGTTTTGGCCTCAGCTTTGCAAAGTCGAGTTAGTGAGGTAGTGTTTGCACTTGGTAAAAAAAATGGAGAAATATTTCGTAAGGGTATTATTTTTGTTGCTGATGATCCAACCCTTTATTTTCTCTACTGCAGGTTTTTGGAGTTGATATACATCCAGGGTGTAACTTTTGGCGGCACGGGTAAGGAAACAGGTGATCGGCATCCCAAAATTTCTGAAGGTGTTCTAATTGGAGCACATGCAACTATACTTGGGAATATAACAATTGGTGAATGTGTGATGATAGCTGCTGGCTCCCTTGTGTTACAAGAGGTTCCTCCTCACAGCATTGTGGCTGGTGTACCAGCAAAGGTTATTGGAAGAGTACATGAGCATTATCCATCCTTAACCATGCAGCAAGATGAAAATAAGCATCTATCGGAGGAGTTTTTCTATAGCAAAGATGAAACCACAGAAAATTACTACATAAATTGA

>Glyma16g22630.3   sequence type=CDS   gene model=Glyma16g22630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCATCTGAGCCACAAGACCTTGGTTTATCTTCCAGAAATGAGGCCTGAACATGAAGCTGAGGAAGGCCAACCCAGAAAAAGTCTTGGTTCTTTTTCTTCTTGGCCTCATCGTTTGGAGAATGTTTTCCCCGTTTATGCCATGGGAACTTCCAACCCTGCAGTCTTGGATTCTTCACTTCACACTTCTGATTGTCTTGATCCTATTTGGGATGCTGTCAGAGAAGAAGCCAAGTTAGAGGCAGAAAAGGAGCCAATTTTGAGTAGCTTCTTCTATGCCACTATTCTGTCTCATGATTGCTTGGAGCAAGCATTGGCTTTTGCTCTTGCCAACCGACTCCAAAACCCTACTCTTTTGGCAACTCAGCTGATGGATATATTTTCTAATGTGATGAAGCATGATAAAGGTATCCAGCAATCCATTCGCTTGGATATTCAGGCATTTAAAGATCGGGATCCTGCTTGTTTGTCATATTGCTCAGCACTTTTATATATGAAGGGCTACCAGTCTTTGCAAGTATATCGAGTAGCTCATGCTTTGTGGGGCCAGGGACGCAAAGTTTTGGCCTCAGCTTTGCAAAGTCGAGTTAGTGAGGTTTTTGGAGTTGATATACATCCAGCTGCAAAAATTGGGGATGGAATTTTAGTAGATCATGGGACAGGTGTTGTTATTGGTGAAACAGTTGTTGTTGGAAACAGAGTTTCATTGATGCAAGGTGTAACTTTTGGCGGCACGGGTAAGGAAACAGGTGATCGGCATCCCAAAATTTCTGAAGGTGTTCTAATTGGAGCACATGCAACTATACTTGGGAATATAACAATTGGTGAATGTGTGATGATAGCTGCTGGCTCCCTTGTGTTACAAGAGGTTCCTCCTCACAGCATTGTGGCTGGTGTACCAGCAAAGGTTATTGGAAGAGTACATGAGCATTATCCATCCTTAACCATGCAGCAAGATGAAAATAAGCATCTATCGGAGGAGTTTTTCTATAGCAAAGATGAAACCACAGAAAATTACTACATAAATTGA

>Glyma16g22630.4   sequence type=CDS   gene model=Glyma16g22630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCATCTGAGCCACAAGACCTTGGTTTATCTTCCAGAAATGAGGCCTGAACATGAAGCTGAGGAAGGCCAACCCAGAAAAAGTCTTGGTTCTTTTTCTTCTTGGCCTCATCGTTTGGAGAATGTTTTCCCCGTTTATGCCATGGGAACTTCCAACCCTGCAGTCTTGGATTCTTCACTTCACACTTCTGATTGTCTTGATCCTATTTGGGATGCTGTCAGAGAAGAAGCCAAGTTAGAGGCAGAAAAGGAGCCAATTTTGAGTAGCTTCTTCTATGCCACTATTCTGTCTCATGATTGCTTGGAGCAAGCATTGGCTTTTGCTCTTGCCAACCGACTCCAAAACCCTACTCTTTTGGCAACTCAGCTGATGGATATATTTTCTAATGTGATGAAGCATGATAAAGGTATCCAGCAATCCATTCGCTTGGATATTCAGGCATTTAAAGATCGGGATCCTGCTTGTTTGTCATATTGCTCAGCACTTTTATATATGAAGGGCTACCAGTCTTTGCAAGTATATCGAGTAGCTCATGCTTTGTGGGGCCAGGGACGCAAAGTTTTGGCCTCAGCTTTGCAAAGTCGAGTTAGTGAGGTTTTTGGAGTTGATATACATCCAGCTGCAAAAATTGGGGATGGAATTTTAGTAGATCATGGGACAGGTGTTGTTATTGGTGAAACAGTTGTTGTTGGAAACAGAGTTTCATTGATGCAAGGTGTAACTTTTGGCGGCACGGGTAAGGAAACAGGTGATCGGCATCCCAAAATTTCTGAAGGTGTTCTAATTGGAGCACATGCAACTATACTTGGGAATATAACAATTGGTGAATGTGTGATGATAGCTGCTGGCTCCCTTGTGTTACAAGAGGTTCCTCCTCACAGCATTGTGGCTGGTGTACCAGCAAAGGTTATTGGAAGAGTACATGAGCATTATCCATCCTTAACCATGCAGCAAGGTAAGCAATAA

Predicted protein sequences of Glyma16g22630

Limit To All Plant Sequences

>Glyma16g22630.2   sequence type=predicted peptide   gene model=Glyma16g22630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAHLSHKTLVYLPEMRPEHEAEEGQPRKSLGSFSSWPHRLENVFPVYAMGTSNPAVLDSSLHTSDCLDPIWDAVREEAKLEAEKEPILSSFFYATILSHDCLEQALAFALANRLQNPTLLATQLMDIFSNVMKHDKGIQQSIRLDIQAFKDRDPACLSYCSALLYMKGYQSLQVYRVAHALWGQGRKVLASALQSRVSEVVFALGKKNGEIFRKGIIFVADDPTLYFLYCRFLELIYIQGVTFGGTGKETGDRHPKISEGVLIGAHATILGNITIGECVMIAAGSLVLQEVPPHSIVAGVPAKVIGRVHEHYPSLTMQQDENKHLSEEFFYSKDETTENYYIN*

>Glyma16g22630.3   sequence type=predicted peptide   gene model=Glyma16g22630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAHLSHKTLVYLPEMRPEHEAEEGQPRKSLGSFSSWPHRLENVFPVYAMGTSNPAVLDSSLHTSDCLDPIWDAVREEAKLEAEKEPILSSFFYATILSHDCLEQALAFALANRLQNPTLLATQLMDIFSNVMKHDKGIQQSIRLDIQAFKDRDPACLSYCSALLYMKGYQSLQVYRVAHALWGQGRKVLASALQSRVSEVFGVDIHPAAKIGDGILVDHGTGVVIGETVVVGNRVSLMQGVTFGGTGKETGDRHPKISEGVLIGAHATILGNITIGECVMIAAGSLVLQEVPPHSIVAGVPAKVIGRVHEHYPSLTMQQDENKHLSEEFFYSKDETTENYYIN*

>Glyma16g22630.4   sequence type=predicted peptide   gene model=Glyma16g22630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAHLSHKTLVYLPEMRPEHEAEEGQPRKSLGSFSSWPHRLENVFPVYAMGTSNPAVLDSSLHTSDCLDPIWDAVREEAKLEAEKEPILSSFFYATILSHDCLEQALAFALANRLQNPTLLATQLMDIFSNVMKHDKGIQQSIRLDIQAFKDRDPACLSYCSALLYMKGYQSLQVYRVAHALWGQGRKVLASALQSRVSEVFGVDIHPAAKIGDGILVDHGTGVVIGETVVVGNRVSLMQGVTFGGTGKETGDRHPKISEGVLIGAHATILGNITIGECVMIAAGSLVLQEVPPHSIVAGVPAKVIGRVHEHYPSLTMQQGKQ*

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