Glyma16g22502 - SoyBase

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Report for Sequence Feature Glyma16g22502

Feature Type:	gene_model
Chromosome:	Gm16
Start:	25978682
stop:	25990897
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma16g22502

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G17570	AT	Annotation by Michelle Graham. TAIR10: Undecaprenyl pyrophosphate synthetase family protein \| chr2:7645086-7645973 FORWARD LENGTH=295	SoyBase	E_val: 3.00E-76	ISS
GO:0016765	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring alkyl or aryl (other than methyl) groups	SoyBase	N/A	ISS
PTHR10291	Panther	UNDECAPRENYL PYROPHOSPHATE SYNTHETASE	JGI		ISS
PF01255	PFAM	Putative undecaprenyl diphosphate synthase	JGI		ISS
UniRef100_G7L9D4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Undecaprenyl pyrophosphate synthetase n=1 Tax=Medicago truncatula RepID=G7L9D4_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233EEE8	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233EEE8 related cluster n=1 Tax=unknown RepID=UPI000233EEE8	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma16g22502

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma16g22502 not represented in the dataset	Glyma16g22502 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma16g22502 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.16g118100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma16g22502

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma16g22502

Limit To All Plant Sequences

>Glyma16g22502.2   sequence type=transcript   gene model=Glyma16g22502   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAAAACCTCTTGAGCCCTAGCCTCTCATTGCCACTTGTCATCAATTTCGTCGCCTCTCATCGCCACTGCTATCATCGTTGCTATTGTTGCTGCTGTACAGAGGCCCCTGTCCTCCTTAGCCTCATTTTTCGTCATTCTCCTAAGCTGCGCCCTCTCTGACATCGCCTTCATTGTCGACGTCGCAGCTTCTCGATCTTGACATATTCTGGAAACCTCCGAACGCAGAGGAGAAGTTTGGTGGTACCTCCTTCAGTCCGCCGTGAGCTTGGAATTGTGCCAGCCGCAAGCTTGTTATTGTGTGTCTAAGTGTTAACAGCCAGCCGCAATCTTGGCCGTACCTCCTTCACTCCGACCGTTGTGCGGAGTGAGGACAGCAACCAAATACGTTGAAATCTGTTGCAGCTGGGCAGGAAAGGTTCAGGACTCTACACAGTTCTTACTATAGAAAAGCACAAGGAATCATTCTCAGACAATCGTAGGGCTGTGAGCAGGGAAGAGGGTTTAGCACTTGGTAAAGAATTGGGGTGTTTGCCTCTTCAATGTATGGTAAAACAAGGGAAAATATGGAGCAGTGCTTTGAGGAACTTGCTCTAAAGGTTTAACTTAGACTCTTAAAGTCTCATAACCGAACAGTTCAATGCAGAAAAGTTCTGGAAATATTATAGGCCATTTCCTTGGAGGTTTATATTGTTATCTAAGAAGATGCATGTTTGCCATTTTATCCGTGGGTCCTGTGCCAAGTCATATTGCTTTCATCATGGATGGGAATCGAAGGTATGCAAAGAAGAGAAACATGGAAGAAGGTGATGGCCATAAGGCTGGATTTACTGCTCTCATGTCCATCCTTAGATACTGTTATGAATTGGGAGTGAAGTATGTCACTGTCTATGCATTCAGCATTGATAACTTCAAAAGGAAGCCTAATGAGGTTCAGTCCTTGATGGAATTGATGCGGGAAAAGATTGAAGAGTTGCTTCAACAAGAAAGTCTTATCAATGAATATGGTGTTAGATTACATTTCATTGGAGACTTGCAACTATTGACTGAGCCTGTCATAGCTTCTGTGGAAAAGGCAATGAGAGTTACTGCTCACAACAACCAGAGAGTTCTTTTGGTTTGCATAGCCTATACTTCTCGTCACGAGATGGTGCATGCTGTTCAAGAATGCTGCAAGGAAAAATGGAATGAAGTTCAAGCATCAAAAGAAGCAAAACTTACAAATGGTGCATTTGCAAGAATTGATCAGGGCCTGAAAGGAAATGGTTTTGATTTGCTTTTTCAAGATTTATGTAAAGACTATCAAAATGCAACCAAAGCTTGTAATAGTGTACCTAAACGAGTGGAACCTGCTGGAGAGAAAGATGGCATGTTGGAGCATACTGTTGAAAAAGGTAACGATAGTGAAGCTGAAATCACATCATGCAATGAGCTGGTTGAAATGACTGAAGAGAGAAAGTATAACCAGGGTGATGTTCCTTTAATAAAACTGGTGGATATTGAGAAGCACATGTACATGGCAGTGGCACCTGATCCAGACATCTTGATCCGAACTTCTGGAGAGGCTCGACTCAGCAATTTTCTTCTTTGGCAGACTAGTACCTGCCCTTTGTATGCACCAACTGCACTTTGGCCTGAAATAGGCCTAAGACACTTGGTCTGGGCAGTATTGAACTTTCAGAGACACCATTTTTATTTGGAAAAGAAAAGGAAGCAGTTTTAACTGTATCCTTATTGTCAAAAATTCATAGTGTAGTTCATGTGATGGCAGTTTCCTTTTTATAAAGACTAGTTTTTGTTTTTTTTATTTTATTTTATTTATAAGAATTGTTGAAATTATAAGAGTTTAAGTAGCCCAAGGGGATAAGAAAGAGAAAAAACTTTGGATAGTAGAATGTAATATTGATATGTGCTGTGCAATGATGTCTTATCAAATACAATGAACAAGAACTTATTTATTTCAAGAATTACTATAAATATGAAAATTA

>Glyma16g22502.3   sequence type=transcript   gene model=Glyma16g22502   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGATTTAATGTGAAAAAGACTTTTAATAGAGTTGTGATAATAACTTTGGTTAAAATTTAAAACCCTGTGACCCAGCACCTTCGTTGAAATTATCATATTTTAATTCATGATTTTTCACATTCGTTGCTACTGCAACGTTCAATCAGCTTCTCGATCTTGACATATTCTGGAAACCTCCGAACGCAGAGGAGAAGTTTGGTGGTACCTCCTTCAGTCCGCCGTGAGCTTGGAATTGTGCCAGCCGCAAGCTTGTTATTGTGTGTCTAAGTGTTAACAGCCAGCCGCAATCTTGGCCGTACCTCCTTCACTCCGACCGTTGTGCGGTTTAACTTAGACTCTTAAAGTCTCATAACCGAACAGTTCAATGCAGAAAAGTTCTGGAAATATTATAGGCCATTTCCTTGGAGGTTTATATTGTTATCTAAGAAGATGCATGTTTGCCATTTTATCCGTGGGTCCTGTGCCAAGTCATATTGCTTTCATCATGGATGGGAATCGAAGGTATGCAAAGAAGAGAAACATGGAAGAAGGTGATGGCCATAAGGCTGGATTTACTGCTCTCATGTCCATCCTTAGATACTGTTATGAATTGGGAGTGAAGTATGTCACTGTCTATGCATTCAGCATTGATAACTTCAAAAGGAAGCCTAATGAGGTTCAGTCCTTGATGGAATTGATGCGGGAAAAGATTGAAGAGTTGCTTCAACAAGAAAGTCTTATCAATGAATATGGTGTTAGATTACATTTCATTGGAGACTTGCAACTATTGACTGAGCCTGTCATAGCTTCTGTGGAAAAGGCAATGAGAGTTACTGCTCACAACAACCAGAGAGTTCTTTTGGTTTGCATAGCCTATACTTCTCGTCACGAGATGGTGCATGCTGTTCAAGAATGCTGCAAGGAAAAATGGAATGAAGTTCAAGCATCAAAAGAAGCAAAACTTACAAATGGTGCATTTGCAAGAATTGATCAGGGCCTGAAAGGAAATGGTTTTGATTTGCTTTTTCAAGATTTATGTAAAGACTATCAAAATGCAACCAAAGCTTGTAATAGTGTACCTAAACGAGTGGAACCTGCTGGAGAGAAAGATGGCATGTTGGAGCATACTGTTGAAAAAGGTAACGATAGTGAAGCTGAAATCACATCATGCAATGAGCTGGTTGAAATGACTGAAGAGAGAAAGTATAACCAGGGTGATGTTCCTTTAATAAAACTGGTGGATATTGAGAAGCACATGTACATGGCAGTGGCACCTGATCCAGACATCTTGATCCGAACTTCTGGAGAGGCTCGACTCAGCAATTTTCTTCTTTGGCAGACTAGTACCTGCCCTTTGTATGCACCAACTGCACTTTGGCCTGAAATAGGCCTAAGACACTTGGTCTGGGCAGTATTGAACTTTCAGAGACACCATTTTTATTTGGAAAAGAAAAGGAAGCAGTTTTAACTGTATCCTTATTGTCAAAAATTCATAGTGTAGTTCATGTGATGGCAGTTTCCTTTTTATAAAGACTAGTTTTTGTTTTTTTTATTTTATTTTATTTATAAGAATTGTTGAAATTATAAGAGTTTAAGTAGCCCAAGGGGATAAGAAAGAGAAAAAACTTTGGATAGTAGAATGTAATATTGATATGTGCTGTGCAATGATGTCTTATCAAATACAATGAACAAGAACTTATTTATTTCAAGAATTACTATAAATATGAAAATTAT

Coding sequences of Glyma16g22502

Limit To All Plant Sequences

>Glyma16g22502.1   sequence type=CDS   gene model=Glyma16g22502   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGAAAAGTTCTGGAAATATTATAGGCCATTTCCTTGGAGGTTTATATTGTTATCTAAGAAGATGCATGTTTGCCATTTTATCCGTGGGTCCTGTGCCAAGTCATATTGCTTTCATCATGGATGGGAATCGAAGGTATGCAAAGAAGAGAAACATGGAAGAAGGTGATGGCCATAAGGCTGGATTTACTGCTCTCATGTCCATCCTTAGATACTGTTATGAATTGGGAGTGAAGTATGTCACTGTCTATGCATTCAGCATTGATAACTTCAAAAGGAAGCCTAATGAGGTTCAGTCCTTGATGGAATTGATGCGGGAAAAGATTGAAGAGTTGCTTCAACAAGAAAGTCTTATCAATGAATATGGTGTTAGATTACATTTCATTGGAGACTTGCAACTATTGACTGAGCCTGTCATAGCTTCTGTGGAAAAGGCAATGAGAGTTACTGCTCACAACAACCAGAGAGTTCTTTTGGTTTGCATAGCCTATACTTCTCGTCACGAGATGGTGCATGCTGTTCAAGAATGCTGCAAGGAAAAATGGAATGAAGTTCAAGCATCAAAAGAAGCAAAACTTACAAATGGTGCATTTGCAAGAATTGATCAGGGCCTGAAAGGAAATGGTTTTGATTTGCTTTTTCAAGATTTATGTAAAGACTATCAAAATGCAACCAAAGCTTGTAATAGTGTACCTAAACGAGTGGAACCTGCTGGAGAGAAAGATGGCATGTTGGAGCATACTGTTGAAAAAGGTAACGATAGTGAAGCTGAAATCACATCATGCAATGAGCTGGTTGAAATGACTGAAGAGAGAAAGTATAACCAGGGTGATGTTCCTTTAATAAAACTGGTGGATATTGAGAAGCACATGTACATGGCAGTGGCACCTGATCCAGACATCTTGATCCGAACTTCTGGAGAGGCTCGACTCAGCAATTTTCTTCTTTGGCAGACTAGTACCTGCCCTTTGTATGCACCAACTGCACTTTGGCCTGAAATAGGCCTAAGACACTTGGTCTGGGCAGTATTGAACTTTCAGAGACACCATTTTTATTTGGAAAAGAAAAGGAAGCAGTTTTAA

>Glyma16g22502.2   sequence type=CDS   gene model=Glyma16g22502   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGAAAAGTTCTGGAAATATTATAGGCCATTTCCTTGGAGGTTTATATTGTTATCTAAGAAGATGCATGTTTGCCATTTTATCCGTGGGTCCTGTGCCAAGTCATATTGCTTTCATCATGGATGGGAATCGAAGGTATGCAAAGAAGAGAAACATGGAAGAAGGTGATGGCCATAAGGCTGGATTTACTGCTCTCATGTCCATCCTTAGATACTGTTATGAATTGGGAGTGAAGTATGTCACTGTCTATGCATTCAGCATTGATAACTTCAAAAGGAAGCCTAATGAGGTTCAGTCCTTGATGGAATTGATGCGGGAAAAGATTGAAGAGTTGCTTCAACAAGAAAGTCTTATCAATGAATATGGTGTTAGATTACATTTCATTGGAGACTTGCAACTATTGACTGAGCCTGTCATAGCTTCTGTGGAAAAGGCAATGAGAGTTACTGCTCACAACAACCAGAGAGTTCTTTTGGTTTGCATAGCCTATACTTCTCGTCACGAGATGGTGCATGCTGTTCAAGAATGCTGCAAGGAAAAATGGAATGAAGTTCAAGCATCAAAAGAAGCAAAACTTACAAATGGTGCATTTGCAAGAATTGATCAGGGCCTGAAAGGAAATGGTTTTGATTTGCTTTTTCAAGATTTATGTAAAGACTATCAAAATGCAACCAAAGCTTGTAATAGTGTACCTAAACGAGTGGAACCTGCTGGAGAGAAAGATGGCATGTTGGAGCATACTGTTGAAAAAGGTAACGATAGTGAAGCTGAAATCACATCATGCAATGAGCTGGTTGAAATGACTGAAGAGAGAAAGTATAACCAGGGTGATGTTCCTTTAATAAAACTGGTGGATATTGAGAAGCACATGTACATGGCAGTGGCACCTGATCCAGACATCTTGATCCGAACTTCTGGAGAGGCTCGACTCAGCAATTTTCTTCTTTGGCAGACTAGTACCTGCCCTTTGTATGCACCAACTGCACTTTGGCCTGAAATAGGCCTAAGACACTTGGTCTGGGCAGTATTGAACTTTCAGAGACACCATTTTTATTTGGAAAAGAAAAGGAAGCAGTTTTAA

>Glyma16g22502.3   sequence type=CDS   gene model=Glyma16g22502   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGAAAAGTTCTGGAAATATTATAGGCCATTTCCTTGGAGGTTTATATTGTTATCTAAGAAGATGCATGTTTGCCATTTTATCCGTGGGTCCTGTGCCAAGTCATATTGCTTTCATCATGGATGGGAATCGAAGGTATGCAAAGAAGAGAAACATGGAAGAAGGTGATGGCCATAAGGCTGGATTTACTGCTCTCATGTCCATCCTTAGATACTGTTATGAATTGGGAGTGAAGTATGTCACTGTCTATGCATTCAGCATTGATAACTTCAAAAGGAAGCCTAATGAGGTTCAGTCCTTGATGGAATTGATGCGGGAAAAGATTGAAGAGTTGCTTCAACAAGAAAGTCTTATCAATGAATATGGTGTTAGATTACATTTCATTGGAGACTTGCAACTATTGACTGAGCCTGTCATAGCTTCTGTGGAAAAGGCAATGAGAGTTACTGCTCACAACAACCAGAGAGTTCTTTTGGTTTGCATAGCCTATACTTCTCGTCACGAGATGGTGCATGCTGTTCAAGAATGCTGCAAGGAAAAATGGAATGAAGTTCAAGCATCAAAAGAAGCAAAACTTACAAATGGTGCATTTGCAAGAATTGATCAGGGCCTGAAAGGAAATGGTTTTGATTTGCTTTTTCAAGATTTATGTAAAGACTATCAAAATGCAACCAAAGCTTGTAATAGTGTACCTAAACGAGTGGAACCTGCTGGAGAGAAAGATGGCATGTTGGAGCATACTGTTGAAAAAGGTAACGATAGTGAAGCTGAAATCACATCATGCAATGAGCTGGTTGAAATGACTGAAGAGAGAAAGTATAACCAGGGTGATGTTCCTTTAATAAAACTGGTGGATATTGAGAAGCACATGTACATGGCAGTGGCACCTGATCCAGACATCTTGATCCGAACTTCTGGAGAGGCTCGACTCAGCAATTTTCTTCTTTGGCAGACTAGTACCTGCCCTTTGTATGCACCAACTGCACTTTGGCCTGAAATAGGCCTAAGACACTTGGTCTGGGCAGTATTGAACTTTCAGAGACACCATTTTTATTTGGAAAAGAAAAGGAAGCAGTTTTAA

Predicted protein sequences of Glyma16g22502

Limit To All Plant Sequences

>Glyma16g22502.1   sequence type=predicted peptide   gene model=Glyma16g22502   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQKSSGNIIGHFLGGLYCYLRRCMFAILSVGPVPSHIAFIMDGNRRYAKKRNMEEGDGHKAGFTALMSILRYCYELGVKYVTVYAFSIDNFKRKPNEVQSLMELMREKIEELLQQESLINEYGVRLHFIGDLQLLTEPVIASVEKAMRVTAHNNQRVLLVCIAYTSRHEMVHAVQECCKEKWNEVQASKEAKLTNGAFARIDQGLKGNGFDLLFQDLCKDYQNATKACNSVPKRVEPAGEKDGMLEHTVEKGNDSEAEITSCNELVEMTEERKYNQGDVPLIKLVDIEKHMYMAVAPDPDILIRTSGEARLSNFLLWQTSTCPLYAPTALWPEIGLRHLVWAVLNFQRHHFYLEKKRKQF*

>Glyma16g22502.2   sequence type=predicted peptide   gene model=Glyma16g22502   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQKSSGNIIGHFLGGLYCYLRRCMFAILSVGPVPSHIAFIMDGNRRYAKKRNMEEGDGHKAGFTALMSILRYCYELGVKYVTVYAFSIDNFKRKPNEVQSLMELMREKIEELLQQESLINEYGVRLHFIGDLQLLTEPVIASVEKAMRVTAHNNQRVLLVCIAYTSRHEMVHAVQECCKEKWNEVQASKEAKLTNGAFARIDQGLKGNGFDLLFQDLCKDYQNATKACNSVPKRVEPAGEKDGMLEHTVEKGNDSEAEITSCNELVEMTEERKYNQGDVPLIKLVDIEKHMYMAVAPDPDILIRTSGEARLSNFLLWQTSTCPLYAPTALWPEIGLRHLVWAVLNFQRHHFYLEKKRKQF*

>Glyma16g22502.3   sequence type=predicted peptide   gene model=Glyma16g22502   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQKSSGNIIGHFLGGLYCYLRRCMFAILSVGPVPSHIAFIMDGNRRYAKKRNMEEGDGHKAGFTALMSILRYCYELGVKYVTVYAFSIDNFKRKPNEVQSLMELMREKIEELLQQESLINEYGVRLHFIGDLQLLTEPVIASVEKAMRVTAHNNQRVLLVCIAYTSRHEMVHAVQECCKEKWNEVQASKEAKLTNGAFARIDQGLKGNGFDLLFQDLCKDYQNATKACNSVPKRVEPAGEKDGMLEHTVEKGNDSEAEITSCNELVEMTEERKYNQGDVPLIKLVDIEKHMYMAVAPDPDILIRTSGEARLSNFLLWQTSTCPLYAPTALWPEIGLRHLVWAVLNFQRHHFYLEKKRKQF*

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